Wall clock time and date at job start Tue Mar 31 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47040 * 2 1 4 4 C 1.50694 * 109.47272 * 119.99870 * 2 1 3 5 5 N 1.30130 * 121.06459 * 300.02996 * 4 2 1 6 6 S 1.69947 * 105.76371 * 179.71146 * 5 4 2 7 7 C 1.72303 * 94.57581 * 0.34094 * 6 5 4 8 8 N 1.38320 * 127.50255 * 179.97438 * 7 6 5 9 9 C 1.46848 * 111.00081 * 123.63576 * 8 7 6 10 10 C 1.53035 * 109.52142 * 185.83415 * 9 8 7 11 11 C 1.53114 * 109.28189 * 300.82150 * 10 9 8 12 12 C 1.53126 * 109.16071 * 57.65474 * 11 10 9 13 13 H 1.08997 * 109.50129 * 62.28942 * 12 11 10 14 14 C 1.50704 * 109.50215 * 182.40633 * 12 11 10 15 15 H 1.07996 * 119.99800 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99793 * 179.97438 * 14 12 11 17 17 N 1.31512 * 120.00082 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99809 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47131 * 60.00257 * 18 16 14 20 20 H 1.48495 * 109.47020 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47090 * 300.00054 * 18 16 14 22 22 C 1.46847 * 110.99691 * 247.84375 * 8 7 6 23 23 N 1.31292 * 121.06026 * 119.99752 * 4 2 1 24 24 H 1.09004 * 109.47500 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47503 * 299.99714 * 1 2 3 26 26 H 1.09002 * 109.47605 * 59.99987 * 1 2 3 27 27 H 1.08997 * 109.46942 * 240.00343 * 2 1 3 28 28 H 1.08997 * 109.47179 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.46936 * 300.00112 * 3 2 1 30 30 H 1.09007 * 109.46739 * 59.99818 * 3 2 1 31 31 H 1.09000 * 109.46321 * 65.82319 * 9 8 7 32 32 H 1.09002 * 109.46191 * 305.84908 * 9 8 7 33 33 H 1.08994 * 109.50219 * 180.87675 * 10 9 8 34 34 H 1.09009 * 109.50165 * 60.76002 * 10 9 8 35 35 H 1.09001 * 109.52084 * 297.74913 * 11 10 9 36 36 H 1.09004 * 109.52756 * 177.55614 * 11 10 9 37 37 H 0.96995 * 120.00108 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.46634 * 54.14337 * 22 8 7 39 39 H 1.09006 * 109.46422 * 294.18233 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 7 1.7302 -0.2841 2.4222 6 16 2.4815 -1.3604 3.5017 7 6 3.1793 -2.3332 2.2626 8 7 3.9718 -3.4559 2.4194 9 6 3.3951 -4.6095 1.7170 10 6 4.2163 -5.8621 2.0309 11 6 5.6647 -5.6418 1.5858 12 6 6.2261 -4.4064 2.2952 13 1 6.2319 -4.5763 3.3719 14 6 7.6321 -4.1478 1.8182 15 1 8.0812 -4.7991 1.0831 16 6 8.3449 -3.0797 2.3204 17 7 7.7981 -2.2870 3.2160 18 14 10.0874 -2.7588 1.7286 19 1 10.0770 -2.5254 0.2621 20 1 10.6311 -1.5607 2.4170 21 1 10.9394 -3.9354 2.0366 22 6 5.3466 -3.1960 1.9737 23 7 2.7882 -1.7795 1.1342 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6765 1.9563 0.8900 31 1 3.4100 -4.4252 0.6428 32 1 2.3665 -4.7577 2.0458 33 1 3.7973 -6.7151 1.4971 34 1 4.1905 -6.0548 3.1035 35 1 5.6948 -5.4876 0.5072 36 1 6.2628 -6.5149 1.8468 37 1 8.2994 -1.5354 3.5689 38 1 5.7355 -2.3175 2.4887 39 1 5.3524 -3.0182 0.8982 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596332194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:27 Heat of formation + Delta-G solvation = 23.027438 kcal Electronic energy + Delta-G solvation = -20238.516157 eV Core-core repulsion = 17306.485931 eV Total energy + Delta-G solvation = -2932.030226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 5.29 seconds Orbital eigenvalues (eV) -41.73450 -39.90640 -36.41360 -35.25379 -34.04750 -32.02581 -31.48169 -28.11840 -27.23566 -26.98233 -24.98299 -23.47862 -22.29061 -20.81706 -20.18229 -19.87029 -18.61036 -17.58203 -16.68029 -16.47376 -16.24567 -15.58985 -15.43358 -15.13911 -14.70593 -14.53005 -14.32792 -13.85638 -13.63481 -13.42385 -13.06020 -12.98273 -12.86681 -12.68984 -12.39154 -12.30665 -12.26368 -12.18639 -11.89180 -11.83256 -11.46673 -11.35655 -11.04549 -10.89738 -10.85675 -10.49488 -10.16331 -9.78947 -8.13686 -6.27599 -0.75108 -0.00164 0.65820 1.41608 1.42398 1.43882 1.50248 2.40452 2.52165 3.02101 3.21280 3.85739 3.96325 4.07339 4.10028 4.13283 4.28291 4.41587 4.52136 4.61551 4.73420 4.74884 4.79102 4.82794 4.86558 4.87987 4.98409 5.05972 5.18803 5.19913 5.25973 5.28246 5.30066 5.57295 5.66024 5.87684 5.98034 6.00679 6.34672 6.46327 6.84035 7.41568 8.90681 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.005389 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.252724 B = 5194.162803 C = 5894.009701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.010 4.010 3 C -0.137 4.137 4 C 0.269 3.731 5 N -0.491 5.491 6 S 0.258 5.742 7 C 0.265 3.735 8 N -0.464 5.464 9 C 0.066 3.934 10 C -0.105 4.105 11 C -0.109 4.109 12 C 0.052 3.948 13 H 0.010 0.990 14 C -0.534 4.534 15 H 0.059 0.941 16 C 0.016 3.984 17 N -0.915 5.915 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.094 3.906 23 N -0.559 5.559 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.039 0.961 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.262 0.738 38 H 0.073 0.927 39 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.582 1.372 -4.812 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.034 4.034 3 C -0.195 4.195 4 C -0.022 4.022 5 N -0.322 5.322 6 S 0.400 5.600 7 C -0.112 4.112 8 N -0.189 5.189 9 C -0.062 4.062 10 C -0.143 4.143 11 C -0.147 4.147 12 C 0.033 3.967 13 H 0.028 0.972 14 C -0.572 4.572 15 H 0.078 0.922 16 C -0.184 4.184 17 N -0.554 5.554 18 Si 0.778 3.222 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.034 4.034 23 N -0.285 5.285 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -14.033 2.113 -3.256 14.560 hybrid contribution 1.591 0.206 -1.532 2.218 sum -12.442 2.319 -4.788 13.532 Atomic orbital electron populations 1.21773 0.91174 1.02284 1.03771 1.20038 0.97760 0.95700 0.89919 1.21802 1.00317 0.93516 1.03857 1.23843 0.92641 0.90208 0.95498 1.77438 1.27070 1.24120 1.03590 1.84715 1.39915 1.17755 1.17650 1.26890 0.95616 0.96925 0.91764 1.60129 1.02557 0.99848 1.56326 1.22251 0.98700 0.89036 0.96181 1.21606 0.94580 0.95761 1.02369 1.21616 0.95583 0.98287 0.99167 1.18672 0.92201 0.90367 0.95472 0.97168 1.21505 0.99176 1.12197 1.24342 0.92246 1.25759 1.01839 0.95913 0.94839 1.69975 1.38499 1.16992 1.29929 0.85696 0.80403 0.77681 0.78451 1.19837 1.21208 1.19232 1.22260 0.82080 1.03373 0.95666 1.68138 1.17601 1.12656 1.30150 0.93055 0.92314 0.88641 0.88251 0.94209 0.88416 0.92267 0.94038 0.89537 0.88380 0.91210 0.93493 0.92035 0.92935 0.90910 0.97241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.11 71.98 0.66 -1.86 16 2 C -0.01 -0.26 3.31 -11.54 -0.04 -0.29 16 3 C -0.14 -2.99 9.11 71.98 0.66 -2.33 16 4 C 0.27 8.89 6.21 139.39 0.87 9.75 16 5 N -0.49 -16.54 11.84 -60.46 -0.72 -17.25 16 6 S 0.26 8.97 23.81 -56.49 -1.34 7.63 16 7 C 0.26 10.28 6.28 178.86 1.12 11.41 16 8 N -0.46 -18.77 4.71 -706.20 -3.33 -22.10 16 9 C 0.07 2.22 5.34 86.32 0.46 2.68 16 10 C -0.11 -3.27 6.09 30.64 0.19 -3.08 16 11 C -0.11 -4.21 5.23 30.67 0.16 -4.05 16 12 C 0.05 2.54 2.26 -11.48 -0.03 2.52 16 13 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 14 C -0.53 -28.61 8.56 25.60 0.22 -28.39 16 15 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 16 C 0.02 0.86 5.30 84.66 0.45 1.31 16 17 N -0.91 -52.27 11.34 21.45 0.24 -52.03 16 18 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 C 0.09 4.52 4.44 86.32 0.38 4.90 16 23 N -0.56 -21.07 10.53 -200.03 -2.11 -23.18 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 1.20 8.09 -2.38 -0.02 1.18 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.10 2.38 8.13 -2.39 -0.02 2.36 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.35 8.09 -2.38 -0.02 1.34 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 2.49 8.10 -2.39 -0.02 2.47 16 33 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.07 4.04 6.07 -2.39 -0.01 4.02 16 39 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 Total: -1.00 -60.99 328.42 0.89 -60.10 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.02 Total: 9.26 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 5.09 Total: -7.43 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -5.91 Total: -114.56 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 8.97 SS G_CDS: -1.34 Total: 7.63 kcal Total: -60.99 0.89 -60.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596332194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.125 kcal (2) G-P(sol) polarization free energy of solvation -60.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.29 seconds