Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47299 * 2 1 4 4 C 1.50698 * 109.47237 * 120.00675 * 2 1 3 5 5 N 1.30124 * 121.05898 * 300.01557 * 4 2 1 6 6 S 1.69954 * 105.75997 * 179.71728 * 5 4 2 7 7 C 1.72301 * 94.57651 * 0.34492 * 6 5 4 8 8 N 1.38313 * 127.50337 * 179.91543 * 7 6 5 9 9 C 1.46847 * 111.00069 * 235.73314 * 8 7 6 10 10 C 1.53044 * 109.51335 * 174.15660 * 9 8 7 11 11 C 1.53119 * 109.27589 * 59.18419 * 10 9 8 12 12 C 1.53120 * 109.16202 * 302.34077 * 11 10 9 13 13 H 1.08996 * 109.50004 * 297.72216 * 12 11 10 14 14 C 1.50699 * 109.50194 * 177.59981 * 12 11 10 15 15 H 1.07995 * 119.99855 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99833 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99790 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99941 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47134 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47106 * 120.00153 * 18 16 14 21 21 H 1.48506 * 109.47005 * 240.00195 * 18 16 14 22 22 C 1.46847 * 110.99009 * 111.52532 * 8 7 6 23 23 N 1.31286 * 121.06187 * 120.00144 * 4 2 1 24 24 H 1.09006 * 109.46878 * 299.99482 * 1 2 3 25 25 H 1.08995 * 109.47438 * 59.99626 * 1 2 3 26 26 H 1.09000 * 109.47570 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46878 * 240.00518 * 2 1 3 28 28 H 1.08995 * 109.47181 * 300.00531 * 3 2 1 29 29 H 1.09000 * 109.46805 * 60.00854 * 3 2 1 30 30 H 1.09001 * 109.47080 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46448 * 54.14382 * 9 8 7 32 32 H 1.08994 * 109.45958 * 294.16747 * 9 8 7 33 33 H 1.09000 * 109.49745 * 179.12223 * 10 9 8 34 34 H 1.08996 * 109.50070 * 299.23917 * 10 9 8 35 35 H 1.08993 * 109.52284 * 62.25342 * 11 10 9 36 36 H 1.09003 * 109.51690 * 182.37761 * 11 10 9 37 37 H 0.97003 * 119.99685 * 180.02562 * 17 16 14 38 38 H 1.09005 * 109.46836 * 65.84003 * 22 8 7 39 39 H 1.08994 * 109.46332 * 305.86019 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7304 -0.2842 2.4221 6 16 2.4817 -1.3606 3.5016 7 6 3.1793 -2.3335 2.2623 8 7 3.9727 -3.4556 2.4190 9 6 5.2534 -3.2966 1.7183 10 6 6.1594 -4.4894 2.0324 11 6 5.4684 -5.7806 1.5854 12 6 4.1156 -5.8976 2.2930 13 1 4.2725 -5.9606 3.3698 14 6 3.4028 -7.1361 1.8142 15 1 3.8672 -7.7759 1.0785 16 6 2.1574 -7.4516 2.3145 17 7 1.5913 -6.6715 3.2093 18 14 1.2736 -8.9863 1.7205 19 1 2.1169 -9.6868 0.7189 20 1 1.0197 -9.8885 2.8724 21 1 -0.0189 -8.6033 1.0974 22 6 3.2688 -4.6641 1.9714 23 7 2.7883 -1.7796 1.1340 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6766 1.9564 -0.8899 29 1 1.6768 1.9563 0.8901 30 1 3.1300 1.4425 -0.0005 31 1 5.7363 -2.3769 2.0483 32 1 5.0759 -3.2483 0.6440 33 1 7.1040 -4.3789 1.4998 34 1 6.3483 -4.5302 3.1051 35 1 5.3145 -5.7567 0.5067 36 1 6.0918 -6.6361 1.8455 37 1 0.7152 -6.8937 3.5616 38 1 3.1009 -4.6093 0.8957 39 1 2.3104 -4.7375 2.4852 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596332195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = 38.269713 kcal Electronic energy + Delta-G solvation = -20238.941049 eV Core-core repulsion = 17307.571777 eV Total energy + Delta-G solvation = -2931.369272 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.32442 -38.36110 -35.13130 -33.60963 -32.43197 -30.57632 -29.72101 -27.22845 -25.75518 -25.11509 -23.56482 -21.86391 -20.84675 -19.42476 -18.78397 -18.35649 -16.79763 -15.83199 -15.21063 -15.12466 -14.55221 -14.24652 -14.12399 -13.73212 -13.16171 -12.94939 -12.79440 -12.49507 -12.22311 -12.21438 -12.01692 -11.59677 -11.25379 -11.18562 -11.05598 -10.89841 -10.87531 -10.54762 -10.37615 -10.29158 -9.87696 -9.77610 -9.50294 -9.16135 -9.06819 -8.76856 -8.48220 -8.15754 -6.10721 -4.17304 0.70822 1.43949 2.03812 2.81117 3.24746 3.33534 3.36841 3.88015 4.34674 4.50021 4.86119 5.06056 5.15240 5.23143 5.41677 5.49927 5.56042 5.64093 5.70469 5.75830 5.77580 5.90926 5.95078 6.05449 6.16304 6.25085 6.27854 6.32877 6.50477 6.57711 6.77733 6.85447 6.93910 7.28345 7.50665 7.61463 7.80769 7.86656 7.96548 8.32113 8.87553 9.48566 10.95402 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.005393 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.920508 B = 5190.587417 C = 5890.789244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.007 4.007 3 C -0.140 4.140 4 C 0.274 3.726 5 N -0.489 5.489 6 S 0.240 5.760 7 C 0.287 3.713 8 N -0.459 5.459 9 C 0.068 3.932 10 C -0.115 4.115 11 C -0.114 4.114 12 C 0.055 3.945 13 H 0.039 0.961 14 C -0.514 4.514 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.070 3.930 23 N -0.546 5.546 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.262 0.738 38 H 0.029 0.971 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.639 12.202 -3.683 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 C -0.198 4.198 4 C -0.017 4.017 5 N -0.321 5.321 6 S 0.382 5.618 7 C -0.089 4.089 8 N -0.184 5.184 9 C -0.061 4.061 10 C -0.153 4.153 11 C -0.152 4.152 12 C 0.036 3.964 13 H 0.058 0.942 14 C -0.553 4.553 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.526 5.526 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.056 4.056 23 N -0.272 5.272 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.069 12.854 -2.131 13.193 hybrid contribution -0.515 -1.157 -1.868 2.257 sum 1.554 11.697 -3.999 12.459 Atomic orbital electron populations 1.21815 0.93163 1.02508 1.02523 1.19769 0.96340 0.95256 0.91699 1.21806 1.01105 0.94319 1.02577 1.23151 0.93400 0.90789 0.94372 1.77411 1.26825 1.24363 1.03455 1.84843 1.41748 1.17093 1.18121 1.26793 0.94694 0.96645 0.90808 1.60223 1.03115 0.99223 1.55814 1.22117 0.88405 0.98892 0.96717 1.21635 0.96818 0.95007 1.01800 1.21718 0.98619 0.94996 0.99861 1.18732 0.89414 0.91326 0.96944 0.94246 1.21191 1.02355 1.07386 1.24334 0.92137 1.25026 0.97466 0.96805 0.94682 1.69851 1.16337 1.37404 1.29019 0.86519 0.79594 0.83113 0.78730 1.19675 1.20867 1.21038 1.22834 1.00576 0.84494 0.97695 1.68114 1.17283 1.11910 1.29903 0.91719 0.91631 0.92392 0.88578 0.91642 0.91727 0.92674 0.91919 0.93446 0.92221 0.91381 0.93307 0.92674 0.92777 0.95254 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.11 37.15 0.34 -1.33 16 2 C -0.01 -0.09 3.31 -91.77 -0.30 -0.39 16 3 C -0.14 -1.51 9.11 37.16 0.34 -1.17 16 4 C 0.27 4.63 6.21 -159.04 -0.99 3.64 16 5 N -0.49 -8.41 11.84 29.53 0.35 -8.06 16 6 S 0.24 4.20 23.81 -107.50 -2.56 1.64 16 7 C 0.29 5.56 6.27 -86.36 -0.54 5.02 16 8 N -0.46 -9.21 4.71 -174.56 -0.82 -10.04 16 9 C 0.07 1.17 5.34 -3.83 -0.02 1.15 16 10 C -0.11 -1.89 6.09 -26.65 -0.16 -2.05 16 11 C -0.11 -2.25 5.22 -26.61 -0.14 -2.38 16 12 C 0.06 1.31 2.26 -91.69 -0.21 1.10 16 13 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 14 C -0.51 -13.52 8.56 -34.44 -0.29 -13.81 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -24.60 11.34 55.43 0.63 -23.97 16 18 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.07 1.63 4.44 -3.83 -0.02 1.62 16 23 N -0.55 -10.33 10.53 -14.59 -0.15 -10.49 16 24 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 2.89 6.07 -51.93 -0.32 2.57 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -27.76 328.41 -10.91 -38.67 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.19 Total: -1.39 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.09 Total: -7.04 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.00 Total: -52.56 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -2.56 Total: 1.64 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.76 -10.91 -38.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596332195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.944 kcal (2) G-P(sol) polarization free energy of solvation -27.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds