Wall clock time and date at job start Tue Mar 31 2020 07:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47063 * 2 1 4 4 C 1.52999 * 109.46968 * 240.00202 * 2 1 3 5 5 C 1.53005 * 109.46770 * 180.02562 * 4 2 1 6 6 C 1.52991 * 109.47256 * 59.99633 * 5 4 2 7 7 C 1.52999 * 109.47530 * 299.99901 * 6 5 4 8 8 C 1.53001 * 109.46844 * 119.99919 * 2 1 3 9 9 H 1.09000 * 109.46737 * 60.00253 * 8 2 1 10 10 S 1.80995 * 109.47074 * 299.99934 * 8 2 1 11 11 C 1.76205 * 99.99991 * 175.00247 * 10 8 2 12 12 N 1.32393 * 126.25643 * 0.02562 * 11 10 8 13 13 N 1.28514 * 110.20061 * 179.97438 * 12 11 10 14 14 C 1.33092 * 109.74691 * 0.02562 * 13 12 11 15 15 C 1.39783 * 126.56054 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99560 * 180.02562 * 15 14 13 17 17 C 1.40081 * 120.00220 * 0.02562 * 15 14 13 18 18 N 1.30811 * 119.99623 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99903 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47160 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46958 * 119.99913 * 19 17 15 22 22 H 1.48503 * 109.46851 * 239.99801 * 19 17 15 23 23 N 1.36674 * 126.26068 * 179.97438 * 11 10 8 24 24 C 1.46496 * 127.14869 * 0.02562 * 23 11 10 25 25 H 1.08998 * 109.47514 * 300.00318 * 1 2 3 26 26 H 1.09006 * 109.46940 * 59.99707 * 1 2 3 27 27 H 1.08995 * 109.47612 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47064 * 299.99797 * 4 2 1 29 29 H 1.08996 * 109.47162 * 60.00213 * 4 2 1 30 30 H 1.09002 * 109.46641 * 179.97438 * 5 4 2 31 31 H 1.08996 * 109.46565 * 299.99541 * 5 4 2 32 32 H 1.09004 * 109.47217 * 60.00138 * 6 5 4 33 33 H 1.09003 * 109.47014 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47064 * 300.00331 * 7 6 5 35 35 H 1.08995 * 109.47685 * 179.97438 * 7 6 5 36 36 H 0.97002 * 119.99556 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.47390 * 270.01779 * 24 23 11 38 38 H 1.09000 * 109.47226 * 30.03051 * 24 23 11 39 39 H 1.09009 * 109.46773 * 150.02429 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2489 6 6 4.0795 -1.4433 0.0003 7 6 3.5695 -0.7221 1.2496 8 6 2.0400 -0.7212 1.2493 9 1 1.6766 -1.7489 1.2492 10 16 1.4366 0.1320 2.7270 11 6 2.0260 -0.9635 3.9750 12 7 2.7127 -2.0781 3.7777 13 7 2.9848 -2.6366 4.9027 14 6 2.4849 -1.9089 5.8986 15 6 2.5758 -2.1927 7.2643 16 1 2.1280 -1.5249 7.9855 17 6 3.2475 -3.3430 7.6975 18 7 3.7893 -4.1520 6.8239 19 14 3.3682 -3.7226 9.5226 20 1 2.6778 -2.6594 10.2960 21 1 2.7263 -5.0328 9.7991 22 1 4.7971 -3.7769 9.9233 23 7 1.8588 -0.8174 5.3236 24 6 1.1609 0.2687 6.0160 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6766 -1.7489 -1.2493 29 1 1.6767 -0.2073 -2.1392 30 1 3.9333 -1.2360 -2.1387 31 1 3.9336 0.3058 -1.2487 32 1 3.7158 -2.4709 0.0001 33 1 5.1695 -1.4440 0.0003 34 1 3.9332 0.3055 1.2498 35 1 3.9321 -1.2363 2.1395 36 1 4.2548 -4.9484 7.1239 37 1 1.8658 1.0697 6.2388 38 1 0.3639 0.6526 5.3793 39 1 0.7338 -0.1082 6.9454 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600525907.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:10 Heat of formation + Delta-G solvation = 38.685520 kcal Electronic energy + Delta-G solvation = -20127.073613 eV Core-core repulsion = 17195.722372 eV Total energy + Delta-G solvation = -2931.351241 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47355 -38.49591 -33.68066 -33.28995 -32.51074 -30.71315 -29.20037 -26.53866 -26.21603 -25.44093 -22.55133 -21.30816 -20.77815 -20.36674 -19.55674 -17.32930 -16.37958 -15.48282 -14.95528 -14.68910 -14.52868 -14.38636 -14.19270 -13.82744 -13.36941 -13.21889 -12.41554 -12.33233 -12.23417 -12.06822 -11.76965 -11.46758 -11.36604 -11.32750 -11.19250 -10.91721 -10.77737 -10.70426 -10.35591 -10.31797 -9.97955 -9.64915 -9.53884 -9.49577 -8.64919 -8.37092 -8.32505 -6.76924 -6.63363 -4.54585 2.16015 2.90741 2.91957 3.07126 3.11598 3.39168 3.88576 4.26873 4.44541 4.75144 4.79500 4.98611 5.23207 5.34381 5.35831 5.51485 5.56476 5.57231 5.64310 5.71159 5.81969 5.86346 5.90488 5.98127 6.05746 6.14232 6.17282 6.27757 6.31042 6.36747 6.42535 6.67346 6.74742 6.84972 6.96620 7.27283 7.52081 7.93589 8.20347 8.72443 8.88781 10.29368 10.67913 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.004573 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.832958 B = 6121.305999 C = 6787.534640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.073 4.073 3 H 0.074 0.926 4 C -0.107 4.107 5 C -0.120 4.120 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.045 4.045 9 H 0.094 0.906 10 S -0.067 6.067 11 C 0.051 3.949 12 N -0.283 5.283 13 N -0.334 5.334 14 C 0.345 3.655 15 C -0.448 4.448 16 H 0.083 0.917 17 C 0.079 3.921 18 N -0.737 5.737 19 Si 0.920 3.080 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.272 1.272 23 N -0.516 5.516 24 C 0.102 3.898 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.278 0.722 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.662 7.815 -9.589 12.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 H 0.093 0.907 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.175 4.175 9 H 0.112 0.888 10 S 0.164 5.836 11 C -0.321 4.321 12 N -0.129 5.129 13 N -0.182 5.182 14 C 0.100 3.900 15 C -0.488 4.488 16 H 0.102 0.898 17 C -0.146 4.146 18 N -0.362 5.362 19 Si 0.743 3.257 20 H -0.186 1.186 21 H -0.198 1.198 22 H -0.198 1.198 23 N -0.218 5.218 24 C -0.043 4.043 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.468 7.519 -10.252 13.178 hybrid contribution 0.058 -0.288 1.664 1.689 sum -3.410 7.231 -8.588 11.733 Atomic orbital electron populations 1.21921 0.94804 1.02334 1.01783 1.21004 0.95803 0.99486 0.93021 0.90731 1.21573 0.95770 1.00768 0.96530 1.21571 0.95473 1.00668 0.98032 1.21515 1.00062 0.99698 0.94023 1.21873 0.92747 1.01004 0.99832 1.23131 0.99219 1.02339 0.92789 0.88768 1.84300 1.71643 1.31658 0.96023 1.25386 1.15740 1.04492 0.86470 1.74472 1.12178 1.03473 1.22790 1.75460 1.27195 1.23334 0.92165 1.21621 0.90558 0.81944 0.95858 1.18131 1.34445 1.08328 0.87945 0.89849 1.25781 0.93825 0.95056 0.99987 1.70022 1.22111 1.08883 1.35141 0.86086 0.78829 0.79164 0.81573 1.18566 1.19760 1.19756 1.46053 1.48847 1.22449 1.04440 1.21476 0.96167 0.89048 0.97596 0.91638 0.92817 0.92413 0.91748 0.91903 0.92311 0.92185 0.91782 0.92104 0.92192 0.88801 0.91097 0.92632 0.91589 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.95 37.16 0.33 -1.43 16 2 C -0.07 -0.92 2.25 -90.62 -0.20 -1.12 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.18 5.20 -26.73 -0.14 -1.32 16 5 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 6 C -0.11 -1.58 5.92 -26.74 -0.16 -1.74 16 7 C -0.12 -1.93 5.02 -26.75 -0.13 -2.06 16 8 C -0.05 -0.74 1.66 -26.75 -0.04 -0.78 16 9 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 10 S -0.07 -1.22 19.76 -107.50 -2.12 -3.35 16 11 C 0.05 1.23 7.77 -87.27 -0.68 0.55 16 12 N -0.28 -7.71 9.74 30.90 0.30 -7.41 16 13 N -0.33 -10.07 10.48 31.26 0.33 -9.74 16 14 C 0.35 9.72 7.53 -154.82 -1.17 8.55 16 15 C -0.45 -11.98 9.05 -38.31 -0.35 -12.33 16 16 H 0.08 2.03 7.30 -52.48 -0.38 1.65 16 17 C 0.08 2.03 5.50 -17.30 -0.10 1.93 16 18 N -0.74 -20.39 11.94 55.56 0.66 -19.73 16 19 Si 0.92 18.65 29.56 -169.99 -5.03 13.63 16 20 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 N -0.52 -12.61 3.26 -123.17 -0.40 -13.01 16 24 C 0.10 1.91 10.88 59.84 0.65 2.56 16 25 H 0.06 0.82 6.91 -51.93 -0.36 0.46 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.98 5.88 -51.93 -0.31 1.67 16 36 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 39 H 0.08 1.36 7.52 -51.92 -0.39 0.97 16 LS Contribution 323.17 15.07 4.87 4.87 Total: -1.00 -31.68 323.17 -9.58 -41.26 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.05 Total: 2.16 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.14 Total: -8.68 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.89 Total: -49.89 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -2.12 Total: -3.35 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.68 -9.58 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600525907.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.944 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds