Wall clock time and date at job start Tue Mar 31 2020 07:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47063 * 2 1 4 4 C 1.52999 * 109.46968 * 240.00202 * 2 1 3 5 5 C 1.53005 * 109.46770 * 180.02562 * 4 2 1 6 6 C 1.52991 * 109.47256 * 59.99633 * 5 4 2 7 7 C 1.52999 * 109.47530 * 299.99901 * 6 5 4 8 8 C 1.53001 * 109.46844 * 119.99919 * 2 1 3 9 9 H 1.09000 * 109.46737 * 60.00253 * 8 2 1 10 10 S 1.80995 * 109.47074 * 299.99934 * 8 2 1 11 11 C 1.76205 * 99.99991 * 175.00247 * 10 8 2 12 12 N 1.32393 * 126.25643 * 0.02562 * 11 10 8 13 13 N 1.28514 * 110.20061 * 179.97438 * 12 11 10 14 14 C 1.33092 * 109.74691 * 0.02562 * 13 12 11 15 15 C 1.39783 * 126.56054 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99560 * 180.02562 * 15 14 13 17 17 C 1.40081 * 120.00220 * 0.02562 * 15 14 13 18 18 N 1.30811 * 119.99623 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99903 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47160 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46958 * 119.99913 * 19 17 15 22 22 H 1.48503 * 109.46851 * 239.99801 * 19 17 15 23 23 N 1.36674 * 126.26068 * 179.97438 * 11 10 8 24 24 C 1.46496 * 127.14869 * 0.02562 * 23 11 10 25 25 H 1.08998 * 109.47514 * 300.00318 * 1 2 3 26 26 H 1.09006 * 109.46940 * 59.99707 * 1 2 3 27 27 H 1.08995 * 109.47612 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47064 * 299.99797 * 4 2 1 29 29 H 1.08996 * 109.47162 * 60.00213 * 4 2 1 30 30 H 1.09002 * 109.46641 * 179.97438 * 5 4 2 31 31 H 1.08996 * 109.46565 * 299.99541 * 5 4 2 32 32 H 1.09004 * 109.47217 * 60.00138 * 6 5 4 33 33 H 1.09003 * 109.47014 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47064 * 300.00331 * 7 6 5 35 35 H 1.08995 * 109.47685 * 179.97438 * 7 6 5 36 36 H 0.97002 * 119.99556 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.47390 * 270.01779 * 24 23 11 38 38 H 1.09000 * 109.47226 * 30.03051 * 24 23 11 39 39 H 1.09009 * 109.46773 * 150.02429 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2489 6 6 4.0795 -1.4433 0.0003 7 6 3.5695 -0.7221 1.2496 8 6 2.0400 -0.7212 1.2493 9 1 1.6766 -1.7489 1.2492 10 16 1.4366 0.1320 2.7270 11 6 2.0260 -0.9635 3.9750 12 7 2.7127 -2.0781 3.7777 13 7 2.9848 -2.6366 4.9027 14 6 2.4849 -1.9089 5.8986 15 6 2.5758 -2.1927 7.2643 16 1 2.1280 -1.5249 7.9855 17 6 3.2475 -3.3430 7.6975 18 7 3.7893 -4.1520 6.8239 19 14 3.3682 -3.7226 9.5226 20 1 2.6778 -2.6594 10.2960 21 1 2.7263 -5.0328 9.7991 22 1 4.7971 -3.7769 9.9233 23 7 1.8588 -0.8174 5.3236 24 6 1.1609 0.2687 6.0160 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6766 -1.7489 -1.2493 29 1 1.6767 -0.2073 -2.1392 30 1 3.9333 -1.2360 -2.1387 31 1 3.9336 0.3058 -1.2487 32 1 3.7158 -2.4709 0.0001 33 1 5.1695 -1.4440 0.0003 34 1 3.9332 0.3055 1.2498 35 1 3.9321 -1.2363 2.1395 36 1 4.2548 -4.9484 7.1239 37 1 1.8658 1.0697 6.2388 38 1 0.3639 0.6526 5.3793 39 1 0.7338 -0.1082 6.9454 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600525907.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:10 Heat of formation + Delta-G solvation = 21.466073 kcal Electronic energy + Delta-G solvation = -20127.820304 eV Core-core repulsion = 17195.722372 eV Total energy + Delta-G solvation = -2932.097932 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.43482 -39.59885 -35.62472 -35.14062 -33.57670 -31.94094 -31.11337 -28.24837 -27.49105 -27.15462 -23.69204 -22.78493 -22.64473 -21.93127 -20.71251 -19.24577 -17.96950 -17.28101 -16.55299 -16.38525 -15.93039 -15.61664 -15.47822 -15.11846 -14.89457 -14.39851 -13.97217 -13.85136 -13.55402 -13.37595 -13.00290 -12.97024 -12.90810 -12.77922 -12.48324 -12.37867 -12.00653 -11.90926 -11.81573 -11.63439 -11.49074 -11.36586 -10.97690 -10.89305 -10.52996 -10.29592 -10.20920 -8.54633 -8.48587 -6.57497 0.54650 1.19879 1.33929 1.40607 1.58638 1.61558 2.18123 2.46368 2.52274 3.34286 3.63292 3.70167 3.98657 4.06977 4.19914 4.23202 4.41671 4.43221 4.49380 4.53667 4.59460 4.60333 4.83187 4.88735 4.90694 4.94460 5.03037 5.14633 5.15546 5.20267 5.29575 5.31844 5.32162 5.42807 5.50097 5.57641 5.58199 6.07104 6.22335 6.76091 6.93466 8.41527 8.67426 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.004573 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.832958 B = 6121.305999 C = 6787.534640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.067 4.067 3 H 0.087 0.913 4 C -0.104 4.104 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.044 4.044 9 H 0.067 0.933 10 S -0.023 6.023 11 C 0.057 3.943 12 N -0.322 5.322 13 N -0.390 5.390 14 C 0.315 3.685 15 C -0.473 4.473 16 H 0.102 0.898 17 C 0.029 3.971 18 N -0.790 5.790 19 Si 1.007 2.993 20 H -0.246 1.246 21 H -0.267 1.267 22 H -0.267 1.267 23 N -0.523 5.523 24 C 0.094 3.906 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.284 0.716 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 9.908 -10.313 15.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 H 0.105 0.895 4 C -0.143 4.143 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.152 4.152 8 C -0.173 4.173 9 H 0.086 0.914 10 S 0.208 5.792 11 C -0.317 4.317 12 N -0.166 5.166 13 N -0.236 5.236 14 C 0.068 3.932 15 C -0.513 4.513 16 H 0.120 0.880 17 C -0.191 4.191 18 N -0.415 5.415 19 Si 0.826 3.174 20 H -0.168 1.168 21 H -0.192 1.192 22 H -0.192 1.192 23 N -0.225 5.225 24 C -0.048 4.048 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.557 9.632 -10.983 15.303 hybrid contribution 0.347 -0.826 1.732 1.950 sum -4.210 8.806 -9.252 13.448 Atomic orbital electron populations 1.21921 0.93849 1.02232 1.02717 1.21065 0.96556 0.99654 0.91434 0.89509 1.21598 0.95497 1.00630 0.96595 1.21547 0.95637 1.01095 0.96789 1.21497 1.00302 0.98928 0.94361 1.21762 0.93130 1.01110 0.99191 1.23304 0.98971 1.01413 0.93645 0.91418 1.84063 1.70712 1.29823 0.94649 1.26501 1.12951 1.04154 0.88072 1.74387 1.14440 1.05379 1.22381 1.75319 1.29345 1.25530 0.93428 1.22052 0.91501 0.83182 0.96451 1.18642 1.35320 1.09479 0.87887 0.88044 1.26979 0.92472 0.94147 1.05532 1.70171 1.23373 1.09776 1.38177 0.84806 0.79027 0.79271 0.74339 1.16836 1.19198 1.19211 1.46401 1.48584 1.22841 1.04658 1.21822 0.96885 0.87953 0.98178 0.92629 0.89896 0.93089 0.92382 0.88769 0.90309 0.90925 0.93369 0.91774 0.91261 0.93772 0.90620 0.90918 0.89203 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.95 71.98 0.64 -2.43 16 2 C -0.07 -1.51 2.25 -10.79 -0.02 -1.53 16 3 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 4 C -0.10 -1.96 5.20 30.60 0.16 -1.80 16 5 C -0.11 -2.22 5.92 30.59 0.18 -2.04 16 6 C -0.11 -3.08 5.92 30.59 0.18 -2.90 16 7 C -0.11 -3.83 5.02 30.58 0.15 -3.68 16 8 C -0.04 -1.41 1.66 30.58 0.05 -1.36 16 9 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 10 S -0.02 -0.81 19.76 -56.49 -1.12 -1.93 16 11 C 0.06 2.81 7.77 179.18 1.39 4.20 16 12 N -0.32 -18.53 9.74 -56.17 -0.55 -19.08 16 13 N -0.39 -24.88 10.48 -55.02 -0.58 -25.46 16 14 C 0.32 18.45 7.53 133.24 1.00 19.45 16 15 C -0.47 -25.88 9.05 23.09 0.21 -25.67 16 16 H 0.10 4.93 7.30 -2.91 -0.02 4.91 16 17 C 0.03 1.53 5.50 85.29 0.47 2.00 16 18 N -0.79 -45.68 11.94 21.85 0.26 -45.42 16 19 Si 1.01 38.47 29.56 68.60 2.03 40.50 16 20 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 21 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 23 N -0.52 -26.03 3.26 -543.61 -1.77 -27.80 16 24 C 0.09 3.42 10.88 127.77 1.39 4.81 16 25 H 0.05 1.25 6.91 -2.39 -0.02 1.23 16 26 H 0.08 1.25 8.14 -2.38 -0.02 1.24 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.04 1.96 5.88 -2.39 -0.01 1.95 16 36 H 0.28 14.77 8.30 -92.71 -0.77 14.00 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 2.78 7.85 -2.39 -0.02 2.77 16 39 H 0.09 2.98 7.52 -2.38 -0.02 2.96 16 Total: -1.00 -74.44 323.17 5.12 -69.32 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 1.03 Total: 20.80 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 5.81 Total: -10.94 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -2.63 Total: -117.75 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -1.12 Total: -1.93 kcal Total: -74.44 5.12 -69.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600525907.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.788 kcal (2) G-P(sol) polarization free energy of solvation -74.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds