Wall clock time and date at job start Tue Mar 31 2020 07:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46716 * 2 1 4 4 C 1.52995 * 109.47168 * 120.00097 * 2 1 3 5 5 C 1.53005 * 109.47052 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47146 * 299.99972 * 5 4 2 7 7 C 1.53005 * 109.47236 * 60.00057 * 6 5 4 8 8 C 1.53003 * 109.47062 * 240.00453 * 2 1 3 9 9 H 1.08993 * 109.46660 * 299.99650 * 8 2 1 10 10 S 1.80993 * 109.47357 * 59.99789 * 8 2 1 11 11 C 1.76195 * 100.00196 * 185.00022 * 10 8 2 12 12 N 1.32395 * 126.25540 * 359.97438 * 11 10 8 13 13 N 1.28516 * 110.19934 * 179.97438 * 12 11 10 14 14 C 1.33093 * 109.74953 * 359.97438 * 13 12 11 15 15 C 1.39774 * 126.56524 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00542 * 180.02562 * 15 14 13 17 17 C 1.40085 * 119.99929 * 0.02562 * 15 14 13 18 18 N 1.30808 * 120.00035 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99860 * 179.72558 * 17 15 14 20 20 H 1.48497 * 109.47322 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46816 * 120.00223 * 19 17 15 22 22 H 1.48500 * 109.46751 * 239.99702 * 19 17 15 23 23 N 1.36672 * 126.26109 * 180.26079 * 11 10 8 24 24 C 1.46495 * 127.15399 * 0.04137 * 23 11 10 25 25 H 1.08999 * 109.47571 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47272 * 299.99741 * 1 2 3 27 27 H 1.09005 * 109.47737 * 59.99837 * 1 2 3 28 28 H 1.09004 * 109.47156 * 300.00233 * 4 2 1 29 29 H 1.08999 * 109.47381 * 60.00310 * 4 2 1 30 30 H 1.08999 * 109.46909 * 59.99856 * 5 4 2 31 31 H 1.09002 * 109.46933 * 179.97438 * 5 4 2 32 32 H 1.08996 * 109.47208 * 179.97438 * 6 5 4 33 33 H 1.09006 * 109.47292 * 300.00437 * 6 5 4 34 34 H 1.08990 * 109.47184 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.46808 * 59.99676 * 7 6 5 36 36 H 0.97000 * 120.00370 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.46706 * 270.14277 * 24 23 11 38 38 H 1.08997 * 109.47188 * 30.13617 * 24 23 11 39 39 H 1.08993 * 109.47632 * 150.14436 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0805 -1.4415 0.0002 7 6 3.5705 -0.7202 -1.2490 8 6 2.0400 -0.7212 -1.2493 9 1 1.6767 -1.7488 -1.2493 10 16 1.4366 0.1321 -2.7271 11 6 2.0260 -0.9633 -3.9750 12 7 2.7127 -2.0779 -3.7778 13 7 2.9839 -2.6370 -4.9027 14 6 2.4834 -1.9097 -5.8986 15 6 2.5740 -2.1935 -7.2642 16 1 2.1264 -1.5257 -7.9855 17 6 3.2453 -3.3441 -7.6975 18 7 3.7878 -4.1527 -6.8240 19 14 3.3598 -3.7274 -9.5222 20 1 2.6654 -2.6667 -10.2953 21 1 4.7872 -3.7812 -9.9280 22 1 2.7183 -5.0390 -9.7936 23 7 1.8627 -0.8149 -5.3238 24 6 1.1709 0.2748 -6.0166 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8900 28 1 1.6766 -0.2074 2.1392 29 1 1.6767 -1.7489 1.2492 30 1 3.9329 0.3071 1.2497 31 1 3.9333 -1.2341 2.1397 32 1 5.1705 -1.4407 0.0002 33 1 3.7175 -2.4693 -0.0001 34 1 3.9338 -1.2340 -2.1389 35 1 3.9334 0.3075 -1.2487 36 1 4.2524 -4.9497 -7.1239 37 1 0.1185 0.0181 -6.1377 38 1 1.2566 1.1900 -5.4309 39 1 1.6228 0.4270 -6.9968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600525908.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:13 Heat of formation + Delta-G solvation = 21.454467 kcal Electronic energy + Delta-G solvation = -20127.201700 eV Core-core repulsion = 17195.103265 eV Total energy + Delta-G solvation = -2932.098436 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.43364 -39.59481 -35.62486 -35.14015 -33.57618 -31.93665 -31.11285 -28.24866 -27.49150 -27.15361 -23.69320 -22.78466 -22.64370 -21.92963 -20.71410 -19.24591 -17.96695 -17.28171 -16.54387 -16.39060 -15.93637 -15.61684 -15.47711 -15.11693 -14.88674 -14.39969 -13.98605 -13.84965 -13.54400 -13.37618 -12.99954 -12.97420 -12.90332 -12.77919 -12.48335 -12.38125 -12.00548 -11.91176 -11.81580 -11.63378 -11.48974 -11.36550 -10.97241 -10.89546 -10.53497 -10.30250 -10.20062 -8.54611 -8.48520 -6.57483 0.54706 1.19881 1.33992 1.40603 1.58640 1.61559 2.18104 2.46382 2.52302 3.34290 3.63401 3.70091 3.98568 4.07004 4.19957 4.23322 4.41739 4.43182 4.49299 4.53602 4.59512 4.60396 4.83147 4.88764 4.90728 4.94481 5.03027 5.14669 5.15527 5.20308 5.29569 5.31852 5.32133 5.42832 5.50079 5.57655 5.58249 6.07148 6.22349 6.76080 6.93506 8.41537 8.67446 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.029786 B = 0.004572 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.801768 B = 6122.675711 C = 6787.385800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.067 4.067 3 H 0.087 0.913 4 C -0.104 4.104 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.112 4.112 8 C -0.044 4.044 9 H 0.067 0.933 10 S -0.022 6.022 11 C 0.057 3.943 12 N -0.322 5.322 13 N -0.390 5.390 14 C 0.315 3.685 15 C -0.473 4.473 16 H 0.102 0.898 17 C 0.029 3.971 18 N -0.790 5.790 19 Si 1.007 2.993 20 H -0.246 1.246 21 H -0.267 1.267 22 H -0.267 1.267 23 N -0.523 5.523 24 C 0.094 3.906 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.284 0.716 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 10.001 10.304 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 H 0.105 0.895 4 C -0.143 4.143 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.152 4.152 8 C -0.173 4.173 9 H 0.086 0.914 10 S 0.208 5.792 11 C -0.317 4.317 12 N -0.166 5.166 13 N -0.236 5.236 14 C 0.068 3.932 15 C -0.513 4.513 16 H 0.120 0.880 17 C -0.191 4.191 18 N -0.415 5.415 19 Si 0.825 3.175 20 H -0.168 1.168 21 H -0.192 1.192 22 H -0.192 1.192 23 N -0.225 5.225 24 C -0.048 4.048 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.401 9.727 10.974 15.310 hybrid contribution 0.319 -0.843 -1.730 1.951 sum -4.082 8.883 9.244 13.455 Atomic orbital electron populations 1.21922 0.93864 1.02224 1.02713 1.21063 0.96545 0.99659 0.91437 0.89497 1.21597 0.95504 1.00627 0.96595 1.21548 0.95623 1.01106 0.96789 1.21499 1.00299 0.98929 0.94366 1.21780 0.93101 1.01117 0.99182 1.23324 0.98975 1.01405 0.93642 0.91421 1.84062 1.70697 1.29824 0.94658 1.26499 1.12911 1.04209 0.88059 1.74389 1.14372 1.05445 1.22382 1.75319 1.29323 1.25548 0.93438 1.22051 0.91530 0.83150 0.96452 1.18640 1.35367 1.09439 0.87881 0.88043 1.26979 0.92438 0.94181 1.05524 1.70167 1.23368 1.09780 1.38183 0.84808 0.79038 0.79259 0.74345 1.16834 1.19180 1.19231 1.46402 1.48885 1.22562 1.04639 1.21819 0.96996 0.87796 0.98228 0.93106 0.89889 0.92640 0.88777 0.92386 0.90920 0.90313 0.91766 0.93374 0.93780 0.91230 0.90616 0.90928 0.89203 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.95 71.98 0.64 -2.44 16 2 C -0.07 -1.51 2.25 -10.80 -0.02 -1.53 16 3 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 4 C -0.10 -1.96 5.20 30.59 0.16 -1.80 16 5 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 6 C -0.11 -3.08 5.92 30.60 0.18 -2.89 16 7 C -0.11 -3.82 5.02 30.61 0.15 -3.66 16 8 C -0.04 -1.42 1.67 30.61 0.05 -1.37 16 9 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 10 S -0.02 -0.81 19.76 -56.49 -1.12 -1.93 16 11 C 0.06 2.81 7.77 179.18 1.39 4.20 16 12 N -0.32 -18.54 9.74 -56.17 -0.55 -19.08 16 13 N -0.39 -24.89 10.48 -55.02 -0.58 -25.46 16 14 C 0.32 18.45 7.53 133.23 1.00 19.45 16 15 C -0.47 -25.88 9.04 23.09 0.21 -25.67 16 16 H 0.10 4.94 7.31 -2.91 -0.02 4.91 16 17 C 0.03 1.53 5.50 85.29 0.47 2.00 16 18 N -0.79 -45.68 11.94 21.85 0.26 -45.42 16 19 Si 1.01 38.47 29.56 68.60 2.03 40.50 16 20 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 21 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 23 N -0.52 -26.03 3.26 -543.64 -1.77 -27.80 16 24 C 0.09 3.42 10.87 127.77 1.39 4.81 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.05 1.25 6.92 -2.38 -0.02 1.23 16 28 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.04 1.96 5.89 -2.39 -0.01 1.94 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 36 H 0.28 14.77 8.30 -92.71 -0.77 14.00 16 37 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.09 2.79 7.85 -2.39 -0.02 2.77 16 39 H 0.09 2.98 7.53 -2.39 -0.02 2.96 16 Total: -1.00 -74.44 323.21 5.12 -69.32 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 1.03 Total: 20.80 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 5.81 Total: -10.93 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -2.63 Total: -117.76 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -1.12 Total: -1.93 kcal Total: -74.44 5.12 -69.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600525908.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.774 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds