Wall clock time and date at job start Tue Mar 31 2020 07:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47301 * 2 1 4 4 C 1.52999 * 109.47363 * 120.00663 * 2 1 3 5 5 C 1.52998 * 109.47264 * 59.99378 * 4 2 1 6 6 C 1.52997 * 109.46801 * 60.00460 * 5 4 2 7 7 C 1.53002 * 109.47354 * 299.99809 * 6 5 4 8 8 C 1.52997 * 109.47030 * 240.00403 * 2 1 3 9 9 H 1.09003 * 109.47614 * 179.97438 * 8 2 1 10 10 S 1.81003 * 109.47412 * 59.99795 * 8 2 1 11 11 C 1.76195 * 100.00238 * 175.00244 * 10 8 2 12 12 N 1.32385 * 126.25910 * 0.16184 * 11 10 8 13 13 N 1.28517 * 110.20398 * 180.30531 * 12 11 10 14 14 C 1.33105 * 109.74561 * 359.72231 * 13 12 11 15 15 C 1.39775 * 126.56481 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99893 * 174.19256 * 15 14 13 17 17 C 1.40076 * 120.00209 * 354.18328 * 15 14 13 18 18 N 1.30822 * 119.99711 * 6.01630 * 17 15 14 19 19 Si 1.86796 * 120.00161 * 186.01212 * 17 15 14 20 20 H 1.48506 * 109.46819 * 94.98577 * 19 17 15 21 21 H 1.48504 * 109.47236 * 214.98371 * 19 17 15 22 22 H 1.48499 * 109.47291 * 334.98767 * 19 17 15 23 23 N 1.36675 * 126.25892 * 180.02562 * 11 10 8 24 24 C 1.46500 * 127.15023 * 359.97438 * 23 11 10 25 25 H 1.09000 * 109.47301 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46776 * 299.99442 * 1 2 3 27 27 H 1.08997 * 109.47274 * 59.99857 * 1 2 3 28 28 H 1.09005 * 109.46689 * 299.99592 * 4 2 1 29 29 H 1.08997 * 109.47195 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.47698 * 300.00530 * 5 4 2 31 31 H 1.09002 * 109.47195 * 179.97438 * 5 4 2 32 32 H 1.09005 * 109.47431 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.47614 * 59.99687 * 6 5 4 34 34 H 1.09001 * 109.47142 * 300.00258 * 7 6 5 35 35 H 1.08999 * 109.47607 * 180.02562 * 7 6 5 36 36 H 0.97005 * 119.99554 * 179.97438 * 18 17 15 37 37 H 1.09001 * 109.46750 * 269.70642 * 24 23 11 38 38 H 1.08993 * 109.47412 * 149.70883 * 24 23 11 39 39 H 1.09007 * 109.47329 * 29.70364 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.5300 -2.1638 1.2491 6 6 2.0400 -2.8850 -0.0002 7 6 1.5300 -2.1637 -1.2494 8 6 2.0400 -0.7212 -1.2493 9 1 3.1300 -0.7208 -1.2496 10 16 1.4366 0.1321 -2.7271 11 6 2.2729 -0.7887 -3.9750 12 7 3.0929 -1.8092 -3.7780 13 7 3.5348 -2.2470 -4.9026 14 6 3.0164 -1.5321 -5.8985 15 6 3.2595 -1.7074 -7.2638 16 1 2.7093 -1.1265 -7.9892 17 6 4.2169 -2.6363 -7.6911 18 7 4.7987 -3.4226 -6.8224 19 14 4.6628 -2.7524 -9.5014 20 1 5.8648 -1.9224 -9.7692 21 1 4.9501 -4.1669 -9.8507 22 1 3.5282 -2.2601 -10.3232 23 7 2.1917 -0.5817 -5.3236 24 6 1.4004 0.4385 -6.0160 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6768 -0.2075 2.1392 29 1 3.1301 -0.7210 1.2493 30 1 0.4401 -2.1639 1.2491 31 1 1.8938 -2.6779 2.1388 32 1 1.6770 -3.9128 -0.0001 33 1 3.1300 -2.8850 -0.0003 34 1 0.4400 -2.1636 -1.2494 35 1 1.8929 -2.6777 -2.1395 36 1 5.4615 -4.0661 -7.1184 37 1 0.4124 0.0388 -6.2444 38 1 1.9013 0.7202 -6.9421 39 1 1.2987 1.3154 -5.3765 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600525909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:17 Heat of formation + Delta-G solvation = 42.872451 kcal Electronic energy + Delta-G solvation = -20203.277491 eV Core-core repulsion = 17272.107809 eV Total energy + Delta-G solvation = -2931.169682 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47094 -38.81946 -33.67762 -33.28720 -31.85831 -30.72548 -29.20386 -26.80805 -26.38395 -25.44516 -22.48684 -22.01200 -20.78228 -20.41413 -18.44256 -17.32236 -16.40654 -15.52717 -15.28611 -14.92383 -14.68617 -14.39023 -14.05336 -13.73639 -13.30036 -12.89222 -12.65329 -12.34620 -12.27446 -12.09552 -11.64089 -11.54298 -11.37451 -11.33299 -11.23033 -10.92584 -10.89623 -10.67502 -10.36535 -10.01883 -9.93412 -9.61972 -9.55658 -9.47877 -8.64970 -8.37215 -8.32531 -6.77285 -6.63649 -4.54480 2.16256 2.91083 2.92802 3.07072 3.10775 3.39436 3.88748 4.26875 4.44651 4.76382 4.79115 5.00708 5.27032 5.33642 5.39415 5.42225 5.50873 5.57619 5.67705 5.72304 5.83136 5.87936 5.90500 6.04380 6.06093 6.08211 6.15392 6.27692 6.28595 6.36447 6.46880 6.69368 6.76342 6.86164 6.97715 7.27421 7.52266 7.93817 8.20352 8.72518 8.88988 10.29231 10.67934 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.032102 B = 0.004541 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.998495 B = 6164.256251 C = 6834.257894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.073 4.073 3 H 0.074 0.926 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.116 4.116 8 C -0.046 4.046 9 H 0.093 0.907 10 S -0.066 6.066 11 C 0.050 3.950 12 N -0.283 5.283 13 N -0.335 5.335 14 C 0.345 3.655 15 C -0.449 4.449 16 H 0.083 0.917 17 C 0.079 3.921 18 N -0.737 5.737 19 Si 0.919 3.081 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.262 1.262 23 N -0.516 5.516 24 C 0.102 3.898 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.278 0.722 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.835 5.593 9.636 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.094 4.094 3 H 0.092 0.908 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.175 4.175 9 H 0.112 0.888 10 S 0.164 5.836 11 C -0.321 4.321 12 N -0.129 5.129 13 N -0.182 5.182 14 C 0.100 3.900 15 C -0.489 4.489 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.361 5.361 19 Si 0.743 3.257 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.186 1.186 23 N -0.218 5.218 24 C -0.043 4.043 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.619 5.308 10.299 13.344 hybrid contribution 0.362 -0.049 -1.661 1.701 sum -6.257 5.259 8.637 11.892 Atomic orbital electron populations 1.21989 0.94887 1.02592 1.01486 1.20969 0.96365 0.98984 0.93033 0.90791 1.21537 1.00780 0.95810 0.96547 1.21602 1.00837 0.95462 0.97961 1.21513 1.01111 0.98590 0.94068 1.21901 1.00309 0.93543 0.99739 1.23104 1.03642 0.97965 0.92805 0.88834 1.84314 1.59957 1.43255 0.96072 1.25411 1.12565 1.07656 0.86495 1.74468 1.08739 1.06929 1.22786 1.75462 1.26059 1.24445 0.92234 1.21614 0.87521 0.84961 0.95868 1.18092 1.21234 1.21735 0.87885 0.89864 1.25780 0.94885 0.94037 0.99900 1.70025 1.17797 1.13077 1.35235 0.86128 0.79589 0.78392 0.81553 1.19468 1.19994 1.18645 1.46064 1.41353 1.29923 1.04434 1.21476 0.95013 0.90185 0.97628 0.91634 0.92914 0.92012 0.91919 0.91820 0.91824 0.92437 0.92147 0.91835 0.91861 0.88918 0.91059 0.92672 0.90421 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.26 37.16 0.31 -1.44 16 2 C -0.07 -0.92 2.72 -90.62 -0.25 -1.17 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.11 -1.18 5.45 -26.73 -0.15 -1.32 16 5 C -0.12 -1.34 5.65 -26.73 -0.15 -1.50 16 6 C -0.11 -1.57 5.92 -26.73 -0.16 -1.72 16 7 C -0.12 -1.92 4.75 -26.73 -0.13 -2.04 16 8 C -0.05 -0.74 1.91 -26.73 -0.05 -0.79 16 9 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 10 S -0.07 -1.22 19.75 -107.50 -2.12 -3.34 16 11 C 0.05 1.22 7.77 -87.28 -0.68 0.54 16 12 N -0.28 -7.72 9.73 30.89 0.30 -7.42 16 13 N -0.33 -10.09 10.50 31.26 0.33 -9.76 16 14 C 0.35 9.73 7.53 -154.81 -1.17 8.56 16 15 C -0.45 -12.02 9.01 -38.32 -0.35 -12.36 16 16 H 0.08 2.03 7.39 -52.48 -0.39 1.64 16 17 C 0.08 2.04 5.49 -17.29 -0.09 1.95 16 18 N -0.74 -20.40 11.96 55.56 0.66 -19.73 16 19 Si 0.92 18.67 29.57 -169.99 -5.03 13.64 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 N -0.52 -12.61 3.26 -123.18 -0.40 -13.01 16 24 C 0.10 1.90 10.87 59.85 0.65 2.55 16 25 H 0.06 0.76 4.81 -51.93 -0.25 0.51 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.76 6.91 -51.93 -0.36 0.40 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.99 6.43 -51.93 -0.33 0.66 16 35 H 0.09 1.94 5.89 -51.93 -0.31 1.64 16 36 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.36 7.59 -51.93 -0.39 0.97 16 39 H 0.07 1.09 7.84 -51.92 -0.41 0.69 16 LS Contribution 316.30 15.07 4.77 4.77 Total: -1.00 -31.71 316.30 -9.41 -41.12 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.71 Total: 2.47 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.21 Total: -8.73 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.89 Total: -49.92 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -2.12 Total: -3.34 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.71 -9.41 -41.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600525909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.990 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds