Wall clock time and date at job start Tue Mar 31 2020 07:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47301 * 2 1 4 4 C 1.52999 * 109.47363 * 120.00663 * 2 1 3 5 5 C 1.52998 * 109.47264 * 59.99378 * 4 2 1 6 6 C 1.52997 * 109.46801 * 60.00460 * 5 4 2 7 7 C 1.53002 * 109.47354 * 299.99809 * 6 5 4 8 8 C 1.52997 * 109.47030 * 240.00403 * 2 1 3 9 9 H 1.09003 * 109.47614 * 179.97438 * 8 2 1 10 10 S 1.81003 * 109.47412 * 59.99795 * 8 2 1 11 11 C 1.76195 * 100.00238 * 175.00244 * 10 8 2 12 12 N 1.32385 * 126.25910 * 0.16184 * 11 10 8 13 13 N 1.28517 * 110.20398 * 180.30531 * 12 11 10 14 14 C 1.33105 * 109.74561 * 359.72231 * 13 12 11 15 15 C 1.39775 * 126.56481 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99893 * 174.19256 * 15 14 13 17 17 C 1.40076 * 120.00209 * 354.18328 * 15 14 13 18 18 N 1.30822 * 119.99711 * 6.01630 * 17 15 14 19 19 Si 1.86796 * 120.00161 * 186.01212 * 17 15 14 20 20 H 1.48506 * 109.46819 * 94.98577 * 19 17 15 21 21 H 1.48504 * 109.47236 * 214.98371 * 19 17 15 22 22 H 1.48499 * 109.47291 * 334.98767 * 19 17 15 23 23 N 1.36675 * 126.25892 * 180.02562 * 11 10 8 24 24 C 1.46500 * 127.15023 * 359.97438 * 23 11 10 25 25 H 1.09000 * 109.47301 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46776 * 299.99442 * 1 2 3 27 27 H 1.08997 * 109.47274 * 59.99857 * 1 2 3 28 28 H 1.09005 * 109.46689 * 299.99592 * 4 2 1 29 29 H 1.08997 * 109.47195 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.47698 * 300.00530 * 5 4 2 31 31 H 1.09002 * 109.47195 * 179.97438 * 5 4 2 32 32 H 1.09005 * 109.47431 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.47614 * 59.99687 * 6 5 4 34 34 H 1.09001 * 109.47142 * 300.00258 * 7 6 5 35 35 H 1.08999 * 109.47607 * 180.02562 * 7 6 5 36 36 H 0.97005 * 119.99554 * 179.97438 * 18 17 15 37 37 H 1.09001 * 109.46750 * 269.70642 * 24 23 11 38 38 H 1.08993 * 109.47412 * 149.70883 * 24 23 11 39 39 H 1.09007 * 109.47329 * 29.70364 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.5300 -2.1638 1.2491 6 6 2.0400 -2.8850 -0.0002 7 6 1.5300 -2.1637 -1.2494 8 6 2.0400 -0.7212 -1.2493 9 1 3.1300 -0.7208 -1.2496 10 16 1.4366 0.1321 -2.7271 11 6 2.2729 -0.7887 -3.9750 12 7 3.0929 -1.8092 -3.7780 13 7 3.5348 -2.2470 -4.9026 14 6 3.0164 -1.5321 -5.8985 15 6 3.2595 -1.7074 -7.2638 16 1 2.7093 -1.1265 -7.9892 17 6 4.2169 -2.6363 -7.6911 18 7 4.7987 -3.4226 -6.8224 19 14 4.6628 -2.7524 -9.5014 20 1 5.8648 -1.9224 -9.7692 21 1 4.9501 -4.1669 -9.8507 22 1 3.5282 -2.2601 -10.3232 23 7 2.1917 -0.5817 -5.3236 24 6 1.4004 0.4385 -6.0160 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6768 -0.2075 2.1392 29 1 3.1301 -0.7210 1.2493 30 1 0.4401 -2.1639 1.2491 31 1 1.8938 -2.6779 2.1388 32 1 1.6770 -3.9128 -0.0001 33 1 3.1300 -2.8850 -0.0003 34 1 0.4400 -2.1636 -1.2494 35 1 1.8929 -2.6777 -2.1395 36 1 5.4615 -4.0661 -7.1184 37 1 0.4124 0.0388 -6.2444 38 1 1.9013 0.7202 -6.9421 39 1 1.2987 1.3154 -5.3765 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600525909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:16 Heat of formation + Delta-G solvation = 25.388767 kcal Electronic energy + Delta-G solvation = -20204.035640 eV Core-core repulsion = 17272.107809 eV Total energy + Delta-G solvation = -2931.927832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43286 -39.91093 -35.62323 -35.13907 -32.93166 -31.94607 -31.11450 -28.28397 -27.72472 -27.29596 -23.61669 -23.18695 -22.74549 -22.23832 -19.57130 -19.22695 -17.93374 -17.27245 -16.66074 -16.49707 -16.27771 -15.85883 -15.35444 -15.08631 -14.78975 -14.08327 -13.95613 -13.80504 -13.77464 -13.44898 -13.05533 -13.00229 -12.75137 -12.66043 -12.63944 -12.40700 -12.00431 -11.95542 -11.85206 -11.64635 -11.42733 -11.06303 -10.95286 -10.86737 -10.53414 -10.27884 -10.22941 -8.55338 -8.48979 -6.57494 0.55090 1.20513 1.34389 1.40456 1.57648 1.61994 2.18139 2.46107 2.52541 3.33278 3.66018 3.69646 4.01877 4.07460 4.19921 4.28970 4.38241 4.43295 4.45177 4.53490 4.59743 4.65574 4.83958 4.91141 4.93419 4.97874 5.01570 5.08471 5.16277 5.23074 5.27507 5.32053 5.35738 5.43027 5.53143 5.58236 5.65001 6.07377 6.22181 6.76006 6.93610 8.41167 8.67358 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.032102 B = 0.004541 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.998495 B = 6164.256251 C = 6834.257894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.068 4.068 3 H 0.082 0.918 4 C -0.105 4.105 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.045 4.045 9 H 0.066 0.934 10 S -0.022 6.022 11 C 0.056 3.944 12 N -0.322 5.322 13 N -0.391 5.391 14 C 0.315 3.685 15 C -0.474 4.474 16 H 0.101 0.899 17 C 0.030 3.970 18 N -0.789 5.789 19 Si 1.007 2.993 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.247 1.247 23 N -0.523 5.523 24 C 0.094 3.906 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.284 0.716 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 7.301 10.362 15.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 H 0.100 0.900 4 C -0.144 4.144 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.175 4.175 9 H 0.085 0.915 10 S 0.208 5.792 11 C -0.317 4.317 12 N -0.166 5.166 13 N -0.237 5.237 14 C 0.068 3.932 15 C -0.514 4.514 16 H 0.119 0.881 17 C -0.191 4.191 18 N -0.415 5.415 19 Si 0.825 3.175 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.170 1.170 23 N -0.225 5.225 24 C -0.049 4.049 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.277 7.032 11.032 15.481 hybrid contribution 0.778 -0.500 -1.728 1.960 sum -7.499 6.531 9.304 13.618 Atomic orbital electron populations 1.21987 0.93525 1.02838 1.02383 1.21036 0.97393 0.99000 0.91424 0.89979 1.21565 1.00526 0.95683 0.96616 1.21578 1.01563 0.95326 0.96694 1.21498 1.00108 0.99043 0.94454 1.21771 1.00691 0.93562 0.99003 1.23281 1.02133 0.98391 0.93668 0.91539 1.84081 1.58420 1.42004 0.94711 1.26536 1.10669 1.06430 0.88105 1.74383 1.10900 1.08931 1.22377 1.75321 1.28254 1.26610 0.93506 1.22044 0.88629 0.86034 0.96463 1.18605 1.22270 1.22732 0.87836 0.88056 1.26980 0.93964 0.92783 1.05352 1.70175 1.18822 1.14216 1.38246 0.84844 0.79623 0.78552 0.74444 1.18802 1.19465 1.16966 1.46410 1.41164 1.30244 1.04656 1.21822 0.95121 0.89703 0.98207 0.91715 0.90064 0.93023 0.88808 0.92454 0.90503 0.90490 0.91808 0.93492 0.90838 0.93963 0.90612 0.90936 0.89367 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.26 71.98 0.59 -2.32 16 2 C -0.07 -1.54 2.72 -10.79 -0.03 -1.57 16 3 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.10 -1.96 5.45 30.59 0.17 -1.80 16 5 C -0.11 -2.22 5.65 30.59 0.17 -2.05 16 6 C -0.11 -3.07 5.92 30.59 0.18 -2.89 16 7 C -0.11 -3.74 4.75 30.60 0.15 -3.60 16 8 C -0.05 -1.46 1.91 30.59 0.06 -1.40 16 9 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 10 S -0.02 -0.80 19.75 -56.49 -1.12 -1.92 16 11 C 0.06 2.78 7.77 179.18 1.39 4.17 16 12 N -0.32 -18.55 9.73 -56.18 -0.55 -19.10 16 13 N -0.39 -24.95 10.50 -55.02 -0.58 -25.53 16 14 C 0.32 18.48 7.53 133.23 1.00 19.48 16 15 C -0.47 -25.96 9.01 23.09 0.21 -25.76 16 16 H 0.10 4.93 7.39 -2.91 -0.02 4.91 16 17 C 0.03 1.56 5.49 85.29 0.47 2.03 16 18 N -0.79 -45.68 11.96 21.85 0.26 -45.42 16 19 Si 1.01 38.49 29.57 68.60 2.03 40.52 16 20 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 21 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 22 H -0.25 -8.69 7.11 99.48 0.71 -7.99 16 23 N -0.52 -26.05 3.26 -543.62 -1.77 -27.82 16 24 C 0.09 3.41 10.87 127.77 1.39 4.80 16 25 H 0.06 1.28 4.81 -2.39 -0.01 1.27 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.11 6.91 -2.39 -0.02 1.09 16 28 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.33 6.43 -2.39 -0.02 1.32 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 2.28 6.43 -2.39 -0.02 2.26 16 35 H 0.04 1.87 5.89 -2.39 -0.01 1.86 16 36 H 0.28 14.80 8.30 -92.70 -0.77 14.03 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.09 2.99 7.59 -2.39 -0.02 2.97 16 39 H 0.09 2.79 7.84 -2.38 -0.02 2.77 16 Total: -1.00 -74.56 316.30 5.07 -69.49 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 1.05 Total: 20.66 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.75 Total: -10.89 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -2.63 Total: -117.86 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -1.12 Total: -1.92 kcal Total: -74.56 5.07 -69.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600525909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.878 kcal (2) G-P(sol) polarization free energy of solvation -74.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds