Wall clock time and date at job start Tue Mar 31 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47045 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99942 * 2 1 3 5 5 C 1.53006 * 109.47127 * 300.00122 * 4 2 1 6 6 C 1.52999 * 109.46626 * 299.99539 * 5 4 2 7 7 C 1.52997 * 109.46991 * 60.00378 * 6 5 4 8 8 C 1.52996 * 109.47131 * 299.99311 * 7 6 5 9 9 H 1.08996 * 109.47452 * 300.00000 * 8 7 6 10 10 S 1.81002 * 109.47093 * 180.02562 * 8 7 6 11 11 C 1.76198 * 100.00098 * 65.00429 * 10 8 7 12 12 N 1.32383 * 126.25894 * 0.02562 * 11 10 8 13 13 N 1.28510 * 110.20647 * 180.02562 * 12 11 10 14 14 C 1.33093 * 109.74900 * 0.02562 * 13 12 11 15 15 C 1.39778 * 126.57145 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00067 * 179.97438 * 15 14 13 17 17 C 1.40081 * 119.99607 * 359.97389 * 15 14 13 18 18 N 1.30816 * 120.00008 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99776 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47204 * 90.00143 * 19 17 15 21 21 H 1.48504 * 109.46873 * 210.00413 * 19 17 15 22 22 H 1.48504 * 109.46998 * 330.00013 * 19 17 15 23 23 N 1.36669 * 126.26111 * 179.71903 * 11 10 8 24 24 C 1.46502 * 127.14810 * 359.95730 * 23 11 10 25 25 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47140 * 299.99907 * 1 2 3 27 27 H 1.08998 * 109.47624 * 60.00376 * 1 2 3 28 28 H 1.09001 * 109.47502 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47289 * 60.00075 * 4 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 5 4 2 31 31 H 1.09000 * 109.47050 * 179.97438 * 5 4 2 32 32 H 1.09002 * 109.46719 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.47839 * 299.99931 * 6 5 4 34 34 H 1.09001 * 109.47289 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.47611 * 59.99933 * 7 6 5 36 36 H 0.96998 * 120.00021 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.46656 * 90.00934 * 24 23 11 38 38 H 1.09002 * 109.47246 * 210.00197 * 24 23 11 39 39 H 1.08990 * 109.47800 * 330.00966 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0401 -2.8850 0.0000 7 6 1.5301 -2.1637 1.2492 8 6 2.0400 -0.7213 1.2492 9 1 3.1300 -0.7212 1.2493 10 16 1.4373 0.1318 2.7275 11 6 2.2742 -0.7892 3.9748 12 7 3.0969 -1.8073 3.7771 13 7 3.5330 -2.2505 4.9018 14 6 3.0122 -1.5383 5.8982 15 6 3.2493 -1.7193 7.2638 16 1 2.7678 -1.0759 7.9854 17 6 4.1113 -2.7352 7.6964 18 7 4.6948 -3.5141 6.8223 19 14 4.4286 -2.9766 9.5214 20 1 3.4319 -3.9277 10.0755 21 1 5.7959 -3.5218 9.7181 22 1 4.3105 -1.6721 10.2212 23 7 2.1974 -0.5793 5.3231 24 6 1.4124 0.4455 6.0157 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 3.1300 -0.7217 -1.2490 29 1 1.6767 -0.2074 -2.1392 30 1 0.4400 -2.1638 -1.2492 31 1 1.8929 -2.6775 -2.1394 32 1 1.6771 -3.9128 -0.0002 33 1 3.1300 -2.8850 0.0000 34 1 1.8931 -2.6777 2.1392 35 1 0.4401 -2.1638 1.2493 36 1 5.2920 -4.2173 7.1219 37 1 0.4215 0.0522 6.2429 38 1 1.9143 0.7232 6.9425 39 1 1.3170 1.3235 5.3770 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600525910.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:20 Heat of formation + Delta-G solvation = 42.977354 kcal Electronic energy + Delta-G solvation = -20205.379622 eV Core-core repulsion = 17274.214489 eV Total energy + Delta-G solvation = -2931.165133 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47005 -38.81914 -33.67743 -33.28666 -31.85756 -30.72436 -29.20085 -26.80705 -26.38295 -25.44525 -22.48542 -22.01153 -20.78136 -20.41338 -18.44196 -17.31978 -16.40563 -15.52661 -15.28643 -14.92455 -14.68064 -14.39166 -14.05084 -13.73645 -13.30048 -12.89132 -12.65247 -12.34988 -12.26746 -12.09489 -11.63633 -11.54249 -11.37530 -11.31959 -11.22348 -10.92556 -10.89782 -10.67475 -10.37178 -10.02163 -9.93109 -9.62152 -9.54427 -9.49521 -8.64787 -8.37169 -8.32306 -6.77268 -6.62949 -4.54366 2.16418 2.91280 2.93173 3.07095 3.10494 3.39583 3.88748 4.27202 4.44932 4.76438 4.79207 5.00788 5.27163 5.34828 5.39494 5.42306 5.50976 5.57442 5.67786 5.72473 5.83228 5.88022 5.90595 6.04471 6.05938 6.08263 6.15482 6.27807 6.28690 6.36565 6.46987 6.69510 6.76604 6.85597 6.97462 7.27616 7.52415 7.94066 8.20193 8.72630 8.89066 10.29721 10.68335 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.031867 B = 0.004551 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.447533 B = 6150.439218 C = 6826.290983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.073 4.073 3 H 0.074 0.926 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.116 4.116 8 C -0.046 4.046 9 H 0.093 0.907 10 S -0.066 6.066 11 C 0.050 3.950 12 N -0.283 5.283 13 N -0.335 5.335 14 C 0.345 3.655 15 C -0.448 4.448 16 H 0.083 0.917 17 C 0.079 3.921 18 N -0.738 5.738 19 Si 0.920 3.080 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.263 1.263 23 N -0.516 5.516 24 C 0.102 3.898 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.279 0.721 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.856 5.557 -9.615 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.093 4.093 3 H 0.092 0.908 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.175 4.175 9 H 0.112 0.888 10 S 0.164 5.836 11 C -0.321 4.321 12 N -0.129 5.129 13 N -0.182 5.182 14 C 0.100 3.900 15 C -0.489 4.489 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.362 5.362 19 Si 0.744 3.256 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.187 1.187 23 N -0.218 5.218 24 C -0.043 4.043 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.628 5.279 -10.279 13.322 hybrid contribution 0.291 -0.113 1.672 1.701 sum -6.337 5.167 -8.607 11.872 Atomic orbital electron populations 1.21988 0.94888 1.02593 1.01485 1.20968 0.96365 0.98982 0.93032 0.90793 1.21540 1.00780 0.95809 0.96548 1.21603 1.00840 0.95467 0.97958 1.21509 1.01110 0.98590 0.94065 1.21896 1.00312 0.93544 0.99731 1.23101 1.03643 0.97967 0.92805 0.88835 1.84313 1.59864 1.43336 0.96086 1.25406 1.12689 1.07543 0.86508 1.74467 1.08680 1.06969 1.22796 1.75457 1.25960 1.24597 0.92159 1.21615 0.87856 0.84646 0.95845 1.18090 1.26764 1.16075 0.87942 0.89899 1.25779 0.94329 0.94555 0.99973 1.70012 1.18883 1.12080 1.35194 0.86138 0.78411 0.79484 0.81607 1.19394 1.20011 1.18686 1.46057 1.41612 1.29668 1.04469 1.21473 0.95150 0.90069 0.97590 0.91634 0.92013 0.92914 0.91819 0.91914 0.91832 0.92439 0.92150 0.91834 0.88931 0.91858 0.91043 0.92647 0.90454 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.26 37.16 0.31 -1.44 16 2 C -0.07 -0.92 2.72 -90.62 -0.25 -1.17 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.11 -1.18 5.45 -26.73 -0.15 -1.32 16 5 C -0.12 -1.35 5.65 -26.73 -0.15 -1.50 16 6 C -0.11 -1.57 5.92 -26.73 -0.16 -1.72 16 7 C -0.12 -1.92 4.75 -26.73 -0.13 -2.04 16 8 C -0.05 -0.74 1.91 -26.73 -0.05 -0.79 16 9 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 10 S -0.07 -1.22 19.76 -107.50 -2.12 -3.34 16 11 C 0.05 1.21 7.77 -87.28 -0.68 0.54 16 12 N -0.28 -7.72 9.74 30.89 0.30 -7.42 16 13 N -0.33 -10.08 10.48 31.26 0.33 -9.75 16 14 C 0.35 9.73 7.53 -154.81 -1.17 8.56 16 15 C -0.45 -11.99 9.04 -38.32 -0.35 -12.34 16 16 H 0.08 2.01 7.31 -52.49 -0.38 1.63 16 17 C 0.08 2.03 5.50 -17.29 -0.10 1.94 16 18 N -0.74 -20.41 11.94 55.56 0.66 -19.75 16 19 Si 0.92 18.66 29.56 -169.99 -5.03 13.64 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 N -0.52 -12.62 3.26 -123.18 -0.40 -13.02 16 24 C 0.10 1.91 10.87 59.85 0.65 2.56 16 25 H 0.06 0.76 4.81 -51.93 -0.25 0.51 16 26 H 0.06 0.76 6.92 -51.93 -0.36 0.40 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.94 5.89 -51.93 -0.31 1.64 16 35 H 0.06 0.99 6.43 -51.93 -0.33 0.66 16 36 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 39 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 LS Contribution 316.18 15.07 4.76 4.76 Total: -1.00 -31.71 316.18 -9.41 -41.11 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.70 Total: 2.49 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.21 Total: -8.73 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.89 Total: -49.94 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -2.12 Total: -3.34 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.71 -9.41 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600525910.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.090 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds