Wall clock time and date at job start Tue Mar 31 2020 05:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33933 * 125.61356 * 2 1 4 4 C 1.34914 * 109.38123 * 180.02562 * 3 2 1 5 5 C 1.46658 * 125.98986 * 179.97438 * 4 3 2 6 6 O 1.21693 * 120.00331 * 173.54878 * 5 4 3 7 7 N 1.34784 * 119.99387 * 353.55957 * 5 4 3 8 8 C 1.46497 * 120.00262 * 3.67470 * 7 5 4 9 9 C 1.50696 * 109.46958 * 83.22140 * 8 7 5 10 10 H 1.08001 * 120.00080 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99843 * 179.97438 * 9 8 7 12 12 N 1.31508 * 119.99790 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99738 * 359.97438 * 11 9 8 14 14 H 1.48511 * 109.47009 * 90.00332 * 13 11 9 15 15 H 1.48503 * 109.46853 * 209.99532 * 13 11 9 16 16 H 1.48497 * 109.47560 * 330.00105 * 13 11 9 17 17 C 1.46501 * 119.99256 * 183.67948 * 7 5 4 18 18 C 1.53004 * 109.47095 * 114.97729 * 17 7 5 19 19 C 1.52997 * 109.46983 * 234.97183 * 17 7 5 20 20 C 1.36551 * 108.02587 * 0.02562 * 4 3 2 21 21 C 1.35124 * 125.61620 * 180.02562 * 2 1 3 22 22 C 1.50700 * 126.44253 * 0.22136 * 21 2 1 23 23 O 1.42897 * 109.47129 * 179.71102 * 22 21 2 24 24 H 1.09004 * 109.46974 * 269.95695 * 1 2 3 25 25 H 1.08998 * 109.46970 * 29.95137 * 1 2 3 26 26 H 1.09002 * 109.47192 * 149.95341 * 1 2 3 27 27 H 1.09001 * 109.46907 * 203.22310 * 8 7 5 28 28 H 1.08994 * 109.47167 * 323.21996 * 8 7 5 29 29 H 0.97003 * 119.99943 * 180.02562 * 12 11 9 30 30 H 1.09000 * 109.47810 * 354.97421 * 17 7 5 31 31 H 1.09000 * 109.47043 * 59.99222 * 18 17 7 32 32 H 1.08998 * 109.47402 * 179.97438 * 18 17 7 33 33 H 1.09008 * 109.46829 * 299.99405 * 18 17 7 34 34 H 1.09002 * 109.47125 * 59.99977 * 19 17 7 35 35 H 1.08998 * 109.47218 * 180.02562 * 19 17 7 36 36 H 1.09005 * 109.47405 * 300.00407 * 19 17 7 37 37 H 1.07994 * 126.64562 * 180.02562 * 20 4 3 38 38 H 1.08996 * 109.47419 * 299.71675 * 22 21 2 39 39 H 1.08998 * 109.47051 * 59.71481 * 22 21 2 40 40 H 0.96708 * 114.00600 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2870 1.0888 0.0000 4 6 3.5823 0.7117 -0.0006 5 6 4.7415 1.6101 -0.0013 6 8 5.8640 1.1552 0.1166 7 7 4.5634 2.9397 -0.1324 8 6 3.2091 3.4949 -0.1932 9 6 2.6741 3.6685 1.2049 10 1 3.2820 3.3924 2.0539 11 6 1.4086 4.1797 1.4003 12 7 0.9416 4.3307 2.6204 13 14 0.3575 4.6579 -0.0680 14 1 -0.4509 3.4892 -0.4996 15 1 -0.5473 5.7721 0.3128 16 1 1.2350 5.0922 -1.1845 17 6 5.7243 3.8295 -0.2141 18 6 5.7630 4.4921 -1.5928 19 6 5.6179 4.9072 0.8667 20 6 3.6251 -0.6531 -0.0015 21 6 2.2939 -1.0985 -0.0005 22 6 1.8297 -2.5322 -0.0058 23 8 2.9647 -3.4003 -0.0114 24 1 -0.3633 -0.0008 1.0277 25 1 -0.3633 0.8904 -0.5131 26 1 -0.3634 -0.8896 -0.5146 27 1 3.2351 4.4622 -0.6950 28 1 2.5623 2.8152 -0.7479 29 1 0.0511 4.6901 2.7579 30 1 6.6363 3.2520 -0.0629 31 1 4.8510 5.0696 -1.7440 32 1 6.6264 5.1545 -1.6535 33 1 5.8388 3.7243 -2.3628 34 1 5.5903 4.4353 1.8488 35 1 6.4814 5.5696 0.8056 36 1 4.7060 5.4848 0.7154 37 1 4.5113 -1.2703 -0.0018 38 1 1.2304 -2.7234 0.8843 39 1 1.2276 -2.7158 -0.8956 40 1 2.7405 -4.3411 -0.0154 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601026663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:19 Heat of formation + Delta-G solvation = -68.728680 kcal Electronic energy + Delta-G solvation = -23278.656767 eV Core-core repulsion = 19867.602074 eV Total energy + Delta-G solvation = -3411.054692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.19048 -39.08030 -36.89927 -35.95672 -33.25878 -32.77138 -31.75012 -31.16752 -27.93668 -27.49021 -26.66560 -25.56661 -22.70291 -22.25599 -20.59382 -19.76568 -18.48377 -17.15244 -17.02701 -16.70824 -15.98962 -15.85790 -14.89531 -14.67344 -14.33487 -13.99322 -13.74634 -13.52736 -13.27767 -12.91008 -12.75897 -12.57242 -12.48329 -12.40403 -11.95934 -11.78976 -11.68615 -11.42307 -11.23077 -10.97418 -10.83517 -10.63460 -10.43458 -10.25914 -10.14047 -9.56276 -9.45622 -9.14203 -8.64755 -8.01586 -7.68124 -6.14306 -4.12446 1.69610 2.69188 3.15810 3.21333 3.26676 3.29427 3.81717 3.87898 4.22925 4.31039 4.98353 5.08918 5.16893 5.27846 5.35476 5.44027 5.49556 5.59693 5.61311 5.70693 5.73764 5.90584 6.02198 6.05245 6.10817 6.28847 6.31732 6.33938 6.40447 6.56063 6.67122 6.85878 6.88400 6.97739 7.30642 7.50477 7.55950 7.64022 8.07950 8.43482 8.77857 8.92265 9.45385 10.98753 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.008124 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.885489 B = 3445.835132 C = 4945.529491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.017 3.983 3 O -0.109 6.109 4 C -0.057 4.057 5 C 0.602 3.398 6 O -0.553 6.553 7 N -0.577 5.577 8 C 0.203 3.797 9 C -0.519 4.519 10 H 0.077 0.923 11 C 0.079 3.921 12 N -0.894 5.894 13 Si 0.865 3.135 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 C 0.135 3.865 18 C -0.159 4.159 19 C -0.151 4.151 20 C -0.112 4.112 21 C -0.211 4.211 22 C 0.157 3.843 23 O -0.566 6.566 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.155 0.845 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -8.031 -7.699 11.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.037 4.037 3 O -0.003 6.003 4 C -0.110 4.110 5 C 0.391 3.609 6 O -0.435 6.435 7 N -0.306 5.306 8 C 0.083 3.917 9 C -0.558 4.558 10 H 0.095 0.905 11 C -0.124 4.124 12 N -0.532 5.532 13 Si 0.692 3.308 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 C 0.032 3.968 18 C -0.218 4.218 19 C -0.209 4.209 20 C -0.133 4.133 21 C -0.213 4.213 22 C 0.079 3.921 23 O -0.370 6.370 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.172 0.828 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.137 -7.239 -7.538 10.452 hybrid contribution -1.152 -0.286 -0.519 1.295 sum -1.015 -7.524 -8.057 11.071 Atomic orbital electron populations 1.20372 0.85463 1.03659 1.03983 1.22421 0.94192 0.84455 1.02651 1.84639 1.15459 1.31760 1.68404 1.21956 0.82639 0.93870 1.12541 1.16614 0.85717 0.81752 0.76834 1.90760 1.22849 1.76471 1.53456 1.47959 1.08794 1.04854 1.68977 1.20005 0.78165 0.94587 0.98985 1.21253 1.00704 1.42722 0.91117 0.90532 1.24768 0.97204 0.95131 0.95272 1.69893 1.17804 1.45454 1.20066 0.87029 0.81190 0.78787 0.83764 1.19856 1.21104 1.19092 1.20978 0.89381 0.91426 0.95060 1.22157 1.02126 1.00624 0.96845 1.22048 1.01926 0.98089 0.98860 1.21477 0.97674 0.92307 1.01860 1.19753 0.93574 0.94499 1.13453 1.20164 0.86951 0.85585 0.99361 1.86523 1.33097 1.19708 1.97719 0.89494 0.90177 0.89901 0.94511 0.94222 0.92615 0.89017 0.92102 0.91847 0.92836 0.92100 0.92934 0.90916 0.82765 0.92783 0.92987 0.77579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.21 36.01 0.37 -0.72 16 2 C 0.02 0.31 7.31 -35.41 -0.26 0.05 16 3 O -0.11 -2.39 6.58 4.99 0.03 -2.36 16 4 C -0.06 -1.27 6.74 -36.79 -0.25 -1.51 16 5 C 0.60 13.81 7.58 -12.86 -0.10 13.71 16 6 O -0.55 -13.27 16.21 5.20 0.08 -13.19 16 7 N -0.58 -12.58 2.37 -169.01 -0.40 -12.98 16 8 C 0.20 4.70 2.98 -5.20 -0.02 4.68 16 9 C -0.52 -13.87 8.04 -34.44 -0.28 -14.15 16 10 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 11 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 12 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 13 Si 0.87 20.01 27.47 -169.99 -4.67 15.34 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 17 C 0.13 2.51 3.23 -67.93 -0.22 2.29 16 18 C -0.16 -2.47 9.26 37.16 0.34 -2.12 16 19 C -0.15 -2.75 8.66 37.16 0.32 -2.42 16 20 C -0.11 -2.24 9.98 -39.39 -0.39 -2.63 16 21 C -0.21 -3.66 6.10 -104.93 -0.64 -4.30 16 22 C 0.16 1.98 7.08 36.01 0.25 2.24 16 23 O -0.57 -7.18 13.08 -35.23 -0.46 -7.64 16 24 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.08 0.84 7.86 -51.93 -0.41 0.43 16 27 H 0.04 0.83 5.54 -51.93 -0.29 0.54 16 28 H 0.04 0.94 4.86 -51.93 -0.25 0.69 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.09 1.73 6.91 -51.93 -0.36 1.37 16 31 H 0.06 0.96 6.91 -51.93 -0.36 0.60 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.43 7.09 -51.93 -0.37 1.06 16 37 H 0.15 3.01 7.97 -52.49 -0.42 2.59 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.38 2.60 9.12 45.56 0.42 3.01 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -32.93 330.81 -5.62 -38.55 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.01 Total: 5.39 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.96 Total: -2.85 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.37 Total: -38.23 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.34 Total: -23.19 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.93 -5.62 -38.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601026663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.180 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds