Wall clock time and date at job start Tue Mar 31 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47016 * 2 1 4 4 S 1.81398 * 109.47117 * 180.02562 * 3 2 1 5 5 C 1.76197 * 102.99805 * 180.02562 * 4 3 2 6 6 C 1.39237 * 120.04812 * 180.02562 * 5 4 3 7 7 N 1.32010 * 120.07397 * 179.97438 * 6 5 4 8 8 C 1.32094 * 120.18058 * 359.97438 * 7 6 5 9 9 C 1.39136 * 120.09376 * 0.02562 * 8 7 6 10 10 N 1.38993 * 120.03477 * 180.02562 * 9 8 7 11 11 C 1.46501 * 120.00069 * 359.97438 * 10 9 8 12 12 C 1.53004 * 109.46739 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.47002 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47016 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99784 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00034 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00138 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47483 * 89.99612 * 18 16 14 20 20 H 1.48499 * 109.47385 * 210.00036 * 18 16 14 21 21 H 1.48506 * 109.46806 * 329.99696 * 18 16 14 22 22 N 1.32751 * 119.92254 * 359.97438 * 9 8 7 23 23 H 1.09000 * 109.46856 * 299.99676 * 1 2 3 24 24 H 1.08988 * 109.47443 * 60.00151 * 1 2 3 25 25 H 1.09000 * 109.46618 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46856 * 240.00324 * 2 1 3 27 27 H 1.09002 * 109.47594 * 119.99905 * 2 1 3 28 28 H 1.09005 * 109.46680 * 59.99803 * 3 2 1 29 29 H 1.09002 * 109.46862 * 300.00353 * 3 2 1 30 30 H 1.07998 * 119.96646 * 359.97184 * 6 5 4 31 31 H 1.07999 * 119.95301 * 179.97438 * 8 7 6 32 32 H 0.96999 * 120.00078 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.46835 * 299.99602 * 11 10 9 34 34 H 1.08997 * 109.47320 * 60.00442 * 11 10 9 35 35 H 1.08998 * 109.46935 * 299.99299 * 12 11 10 36 36 H 1.08992 * 109.47708 * 59.99849 * 12 11 10 37 37 H 1.09006 * 109.46653 * 300.00043 * 13 12 11 38 38 H 1.09000 * 109.46964 * 59.99642 * 13 12 11 39 39 H 0.96997 * 120.00469 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4426 -0.0008 5 6 4.2502 3.1594 0.0001 6 6 5.5814 3.5677 -0.0008 7 7 5.8789 4.8538 -0.0006 8 6 4.9160 5.7581 -0.0002 9 6 3.5834 5.3582 0.0007 10 7 2.5712 6.3108 0.0006 11 6 2.9073 7.7368 0.0001 12 6 1.6201 8.5640 0.0008 13 6 1.9711 10.0533 -0.0003 14 6 0.7033 10.8681 -0.0003 15 1 -0.2566 10.3733 0.0008 16 6 0.7690 12.2453 -0.0007 17 7 1.9380 12.8479 -0.0005 18 14 -0.8023 13.2553 0.0000 19 1 -1.2179 13.5233 1.4003 20 1 -0.5635 14.5428 -0.7004 21 1 -1.8747 12.5028 -0.6993 22 7 3.2798 4.0659 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 6.3715 2.8314 -0.0015 31 1 5.1636 6.8094 0.0003 32 1 1.6423 6.0315 0.0008 33 1 3.4908 7.9727 0.8900 34 1 3.4905 7.9724 -0.8900 35 1 1.0362 8.3281 -0.8889 36 1 1.0371 8.3284 0.8910 37 1 2.5553 10.2895 0.8891 38 1 2.5538 10.2886 -0.8909 39 1 1.9843 13.8167 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601114507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:05 Heat of formation + Delta-G solvation = 18.265513 kcal Electronic energy + Delta-G solvation = -18449.245702 eV Core-core repulsion = 15517.008983 eV Total energy + Delta-G solvation = -2932.236719 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -40.86351 -36.76515 -35.07592 -34.29635 -33.55869 -31.73580 -29.66133 -27.68903 -26.65738 -24.98604 -23.76715 -22.66948 -21.77025 -20.54687 -18.02453 -17.79207 -16.71309 -16.36169 -16.09838 -15.81371 -15.38026 -14.77425 -14.59561 -14.49011 -14.39198 -13.88751 -13.02096 -13.00799 -12.35248 -12.34439 -12.13207 -11.90954 -11.73388 -11.47316 -11.46282 -11.22399 -11.00749 -10.85083 -10.74218 -10.63202 -10.59652 -9.90655 -9.59320 -9.23482 -9.16145 -8.44511 -8.31983 -7.55293 -6.09324 -4.12550 0.80236 1.16959 1.29176 1.94236 3.12327 3.26437 3.33241 3.36063 3.71872 4.38267 4.41930 4.44145 4.50221 4.53296 4.78887 4.88181 5.10719 5.14804 5.26918 5.30007 5.33694 5.38177 5.44604 5.52683 5.64172 5.68269 5.85293 5.90707 6.12216 6.42122 6.44908 6.73259 6.85847 7.37593 7.52698 7.53149 7.64226 7.88292 7.90727 8.29553 8.93692 9.52282 11.01938 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.002789 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.256947 B =10036.867864 C =11283.469384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.096 4.096 4 S -0.070 6.070 5 C 0.123 3.877 6 C -0.008 4.008 7 N -0.386 5.386 8 C -0.020 4.020 9 C 0.379 3.621 10 N -0.705 5.705 11 C 0.118 3.882 12 C -0.120 4.120 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.519 5.519 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.405 0.595 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 -24.070 -0.001 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.245 4.245 4 S 0.170 5.830 5 C -0.129 4.129 6 C -0.175 4.175 7 N -0.099 5.099 8 C -0.191 4.191 9 C 0.135 3.865 10 N -0.335 5.335 11 C -0.005 4.005 12 C -0.158 4.158 13 C -0.013 4.013 14 C -0.563 4.563 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 N -0.247 5.247 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.183 0.817 31 H 0.186 0.814 32 H 0.241 0.759 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.125 -24.667 -0.007 24.864 hybrid contribution -2.057 1.783 0.014 2.722 sum 1.068 -22.884 0.007 22.909 Atomic orbital electron populations 1.21744 0.94300 1.02124 1.02450 1.21322 0.96647 0.93814 1.03193 1.23556 0.92857 1.01153 1.06894 1.85440 1.08084 0.98380 1.91097 1.23798 0.93066 0.98332 0.97754 1.22864 0.94078 0.93460 1.07142 1.68209 1.35210 1.01218 1.05272 1.23103 0.87640 1.00788 1.07571 1.19403 0.89545 0.87525 0.90068 1.44936 1.06724 1.04473 1.77367 1.21870 1.00392 0.76722 1.01552 1.21877 0.94180 0.98455 1.01273 1.19034 0.97301 0.87258 0.97680 1.21179 0.92687 0.91222 1.51164 0.92635 1.25018 0.96147 0.98072 0.95149 1.69951 1.23516 1.09357 1.50425 0.86573 0.83502 0.79659 0.78154 1.20614 1.21142 1.19872 1.68249 1.34584 1.00263 1.21650 0.92313 0.92308 0.92072 0.91006 0.91004 0.88976 0.88982 0.81744 0.81370 0.75905 0.91566 0.91557 0.92495 0.92494 0.96197 0.96184 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.11 -0.75 5.94 -26.73 -0.16 -0.91 16 3 C -0.10 -0.86 5.22 37.16 0.19 -0.66 16 4 S -0.07 -0.71 21.92 -107.50 -2.36 -3.07 16 5 C 0.12 1.61 7.00 -16.76 -0.12 1.49 16 6 C -0.01 -0.10 10.97 -17.10 -0.19 -0.29 16 7 N -0.39 -5.61 10.48 -12.68 -0.13 -5.74 16 8 C -0.02 -0.28 10.48 -17.11 -0.18 -0.46 16 9 C 0.38 5.52 7.66 -154.73 -1.19 4.33 16 10 N -0.70 -9.86 5.73 -60.34 -0.35 -10.21 16 11 C 0.12 1.78 4.90 -4.04 -0.02 1.76 16 12 C -0.12 -2.19 5.27 -26.72 -0.14 -2.34 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 15 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 N -0.52 -7.40 9.63 -11.10 -0.11 -7.51 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.36 8.14 -51.94 -0.42 -0.06 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.17 2.20 6.71 -52.49 -0.35 1.85 16 32 H 0.41 5.36 8.60 -40.82 -0.35 5.01 16 33 H 0.07 0.99 7.94 -51.93 -0.41 0.57 16 34 H 0.07 0.99 7.94 -51.93 -0.41 0.57 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -29.62 343.65 -10.17 -39.79 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.14 Total: 1.00 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.98 Total: -10.17 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.15 Total: -48.82 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -2.36 Total: -3.07 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.62 -10.17 -39.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601114507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.053 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds