Wall clock time and date at job start Tue Mar 31 2020 05:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46986 * 2 1 4 4 C 1.33318 * 122.71033 * 85.02326 * 3 2 1 5 5 S 1.76173 * 108.09646 * 179.97438 * 4 3 2 6 6 C 1.70968 * 90.35295 * 359.97438 * 5 4 3 7 7 N 1.38613 * 124.94694 * 179.97438 * 6 5 4 8 8 C 1.46956 * 110.99910 * 0.03351 * 7 6 5 9 9 C 1.53049 * 109.37889 * 176.82063 * 8 7 6 10 10 N 1.46955 * 109.36962 * 58.38792 * 9 8 7 11 11 C 1.46896 * 111.00233 * 176.80960 * 10 9 8 12 12 C 1.50696 * 109.47204 * 189.99950 * 11 10 9 13 13 H 1.07996 * 119.99849 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99922 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00248 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99959 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47407 * 89.99945 * 16 14 12 18 18 H 1.48495 * 109.47290 * 210.00412 * 16 14 12 19 19 H 1.48501 * 109.47131 * 330.00343 * 16 14 12 20 20 C 1.46955 * 110.87760 * 300.68251 * 10 9 8 21 21 C 1.46957 * 111.01972 * 236.21836 * 7 6 5 22 22 N 1.29690 * 110.10235 * 0.24661 * 6 5 4 23 23 H 1.09000 * 109.47537 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47707 * 300.00340 * 1 2 3 25 25 H 1.09000 * 109.47227 * 60.00534 * 1 2 3 26 26 H 1.08994 * 109.47120 * 239.99913 * 2 1 3 27 27 H 1.09005 * 109.46926 * 119.99827 * 2 1 3 28 28 H 1.08002 * 125.95504 * 359.97438 * 4 3 2 29 29 H 1.09002 * 109.49189 * 56.83906 * 8 7 6 30 30 H 1.09002 * 109.48707 * 296.79664 * 8 7 6 31 31 H 1.09005 * 109.48797 * 178.36083 * 9 8 7 32 32 H 1.09006 * 109.49101 * 298.41852 * 9 8 7 33 33 H 1.08998 * 109.47372 * 310.00100 * 11 10 9 34 34 H 1.09007 * 109.46960 * 70.00186 * 11 10 9 35 35 H 0.97003 * 120.00145 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.48806 * 179.28632 * 20 10 9 37 37 H 1.09003 * 109.48675 * 299.34665 * 20 10 9 38 38 H 1.08997 * 109.47347 * 63.19953 * 21 7 6 39 39 H 1.09002 * 109.50396 * 303.16086 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1806 2.1325 1.1175 5 16 2.7859 3.7267 0.6748 6 6 2.7820 3.2814 -0.9759 7 7 3.1701 4.1047 -2.0213 8 6 3.5905 5.4226 -1.5255 9 6 4.0850 6.2724 -2.6985 10 7 3.0100 6.4049 -3.6917 11 6 3.4212 7.2778 -4.7993 12 6 2.2269 7.5880 -5.6644 13 1 1.2592 7.1780 -5.4160 14 6 2.3696 8.3960 -6.7724 15 7 3.5479 8.8956 -7.0747 16 14 0.8893 8.7799 -7.8452 17 1 0.2200 10.0072 -7.3444 18 1 1.3351 8.9954 -9.2452 19 1 -0.0640 7.6423 -7.7989 20 6 2.5900 5.0869 -4.1877 21 6 2.0954 4.2372 -3.0148 22 7 2.3576 2.0630 -1.1079 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.9670 1.7913 2.1197 29 1 4.3956 5.2989 -0.8012 30 1 2.7451 5.9183 -1.0484 31 1 4.3701 7.2605 -2.3370 32 1 4.9478 5.7904 -3.1585 33 1 3.8302 8.2052 -4.3985 34 1 4.1812 6.7736 -5.3963 35 1 3.6483 9.4638 -7.8544 36 1 1.7849 5.2107 -4.9120 37 1 3.4356 4.5914 -4.6647 38 1 1.2327 4.7191 -2.5548 39 1 1.8101 3.2492 -3.3763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601261008.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:14 Heat of formation + Delta-G solvation = 54.811727 kcal Electronic energy + Delta-G solvation = -19691.942840 eV Core-core repulsion = 16761.290884 eV Total energy + Delta-G solvation = -2930.651956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.22643 -38.74203 -35.48039 -33.33778 -32.41366 -30.77080 -29.30711 -27.90843 -25.63979 -24.60953 -23.58038 -22.37722 -21.51495 -19.64059 -19.26337 -18.10559 -16.50515 -16.37157 -15.39480 -14.95401 -14.69120 -14.57160 -14.41759 -14.11531 -13.94842 -13.81220 -13.38618 -13.01875 -12.45170 -12.27799 -12.06914 -11.94561 -11.42825 -11.31836 -11.12496 -11.00321 -10.89987 -10.80809 -10.56818 -10.49181 -10.05465 -9.85071 -9.50606 -9.24779 -9.12202 -8.47522 -8.02235 -7.37890 -6.06836 -4.08766 0.77628 1.25515 1.73950 2.77252 3.30213 3.34765 3.36442 3.39627 4.38240 4.46471 4.77115 4.87969 4.97730 5.15041 5.17390 5.21560 5.28601 5.33074 5.39476 5.47565 5.51102 5.67242 5.68272 5.84968 5.88358 5.95287 5.99680 6.11503 6.21489 6.43171 6.53606 6.64815 6.84526 7.20081 7.27212 7.72634 7.87063 7.98387 8.09595 8.45462 8.98273 9.55875 11.04000 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.029354 B = 0.003658 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.629230 B = 7652.354388 C = 8284.231487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.098 3.902 4 C -0.290 4.290 5 S 0.079 5.921 6 C 0.253 3.747 7 N -0.441 5.441 8 C 0.049 3.951 9 C 0.059 3.941 10 N -0.539 5.539 11 C 0.194 3.806 12 C -0.510 4.510 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.065 3.935 21 C 0.068 3.932 22 N -0.504 5.504 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.171 0.829 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.032 0.968 34 H -0.006 1.006 35 H 0.262 0.738 36 H 0.097 0.903 37 H 0.035 0.965 38 H 0.054 0.946 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 -13.555 16.314 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.034 4.034 4 C -0.430 4.430 5 S 0.330 5.670 6 C -0.117 4.117 7 N -0.161 5.161 8 C -0.079 4.079 9 C -0.071 4.071 10 N -0.265 5.265 11 C 0.069 3.931 12 C -0.549 4.549 13 H 0.082 0.918 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.064 4.064 21 C -0.059 4.059 22 N -0.225 5.225 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.188 0.812 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.012 0.988 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.054 -12.674 16.118 20.607 hybrid contribution -0.705 -0.578 -0.642 1.115 sum -2.759 -13.252 15.476 20.560 Atomic orbital electron populations 1.21723 0.94322 1.01839 1.02371 1.20122 0.96112 0.89397 1.03285 1.20018 0.99184 0.97937 0.86282 1.26350 1.15414 0.97565 1.03665 1.84133 1.63439 1.14958 1.04462 1.25495 0.98342 0.93854 0.94008 1.58529 1.35732 1.12502 1.09353 1.22556 1.00876 0.85989 0.98445 1.22052 0.93862 0.98540 0.92607 1.62346 1.36056 1.11443 1.16616 1.19720 0.95857 0.91029 0.86467 1.21130 0.95120 1.29886 1.08739 0.91844 1.24983 0.96012 0.95897 0.97630 1.69951 1.22561 1.33706 1.27470 0.86492 0.82618 0.78780 0.79490 1.20623 1.21293 1.19818 1.22086 1.01003 0.88704 0.94621 1.22492 0.90278 1.01272 0.91835 1.66291 1.19504 1.05475 1.31189 0.92081 0.92660 0.92266 0.90080 0.90377 0.81173 0.89859 0.91844 0.89789 0.94457 0.94980 0.98803 0.92851 0.88487 0.94683 0.92789 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.05 -0.46 6.34 -27.88 -0.18 -0.64 16 3 C 0.10 1.24 5.99 -84.18 -0.50 0.73 16 4 C -0.29 -3.25 11.11 29.01 0.32 -2.93 16 5 S 0.08 0.96 21.17 -107.50 -2.28 -1.31 16 6 C 0.25 3.81 6.81 -87.68 -0.60 3.22 16 7 N -0.44 -7.05 4.78 -175.22 -0.84 -7.89 16 8 C 0.05 0.72 4.64 -3.77 -0.02 0.71 16 9 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 10 N -0.54 -11.25 4.70 -235.91 -1.11 -12.36 16 11 C 0.19 4.91 4.72 -4.98 -0.02 4.89 16 12 C -0.51 -13.97 8.47 -34.44 -0.29 -14.26 16 13 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 16 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 C 0.06 1.25 5.43 -3.77 -0.02 1.22 16 21 C 0.07 1.13 5.51 -3.77 -0.02 1.11 16 22 N -0.50 -7.73 10.25 -11.36 -0.12 -7.85 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.08 1.06 7.60 -51.93 -0.39 0.67 16 30 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16 31 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.03 0.86 8.03 -51.93 -0.42 0.45 16 34 H -0.01 -0.16 8.12 -51.92 -0.42 -0.58 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.10 1.97 6.79 -51.93 -0.35 1.62 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.45 7.89 -51.93 -0.41 1.04 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -30.04 328.08 -10.90 -40.94 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -6.14 Total: -2.88 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.08 Total: -4.34 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -1.33 Total: -53.64 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.28 Total: -1.31 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.04 -10.90 -40.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261008.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.750 kcal (2) G-P(sol) polarization free energy of solvation -30.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds