Wall clock time and date at job start Tue Mar 31 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33932 * 125.61733 * 2 1 4 4 C 1.34909 * 109.38584 * 180.02562 * 3 2 1 5 5 C 1.46660 * 125.99123 * 179.97438 * 4 3 2 6 6 O 1.21692 * 120.00370 * 180.02562 * 5 4 3 7 7 N 1.34776 * 119.99785 * 0.02562 * 5 4 3 8 8 C 1.46496 * 120.00269 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47265 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47195 * 299.99934 * 9 8 7 11 11 C 1.52998 * 109.46904 * 60.00148 * 9 8 7 12 12 C 1.50699 * 109.46785 * 179.97438 * 9 8 7 13 13 H 1.07993 * 120.00430 * 1.35090 * 12 9 8 14 14 C 1.37886 * 119.99631 * 181.34972 * 12 9 8 15 15 N 1.31519 * 119.99759 * 193.97665 * 14 12 9 16 16 Si 1.86800 * 119.99890 * 13.97731 * 14 12 9 17 17 H 1.48498 * 109.47262 * 84.55034 * 16 14 12 18 18 H 1.48499 * 109.46607 * 204.54772 * 16 14 12 19 19 H 1.48494 * 109.47099 * 324.54605 * 16 14 12 20 20 C 1.36544 * 108.02297 * 0.02562 * 4 3 2 21 21 C 1.35132 * 125.61869 * 180.02562 * 2 1 3 22 22 C 1.50704 * 126.43783 * 0.22686 * 21 2 1 23 23 O 1.42900 * 109.46840 * 179.71365 * 22 21 2 24 24 H 1.08995 * 109.46928 * 269.95670 * 1 2 3 25 25 H 1.09004 * 109.47357 * 29.95810 * 1 2 3 26 26 H 1.08998 * 109.47069 * 149.95339 * 1 2 3 27 27 H 0.97010 * 119.99783 * 359.97438 * 7 5 4 28 28 H 1.09000 * 109.46867 * 299.99901 * 8 7 5 29 29 H 1.09002 * 109.46848 * 59.99788 * 8 7 5 30 30 H 1.08997 * 109.46866 * 69.36944 * 10 9 8 31 31 H 1.09005 * 109.46999 * 189.36708 * 10 9 8 32 32 H 1.08996 * 109.47211 * 309.36452 * 10 9 8 33 33 H 1.09000 * 109.47277 * 59.99722 * 11 9 8 34 34 H 1.08995 * 109.47235 * 179.97438 * 11 9 8 35 35 H 1.08997 * 109.47371 * 300.00069 * 11 9 8 36 36 H 0.96995 * 119.99868 * 179.97438 * 15 14 12 37 37 H 1.08000 * 126.64301 * 180.02562 * 20 4 3 38 38 H 1.09003 * 109.46894 * 299.71017 * 22 21 2 39 39 H 1.09001 * 109.47177 * 59.70823 * 22 21 2 40 40 H 0.96704 * 113.99947 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2869 1.0888 0.0000 4 6 3.5823 0.7117 -0.0006 5 6 4.7415 1.6101 -0.0013 6 8 5.8680 1.1499 -0.0022 7 7 4.5590 2.9455 -0.0009 8 6 5.7169 3.8430 -0.0022 9 6 5.2362 5.2956 -0.0021 10 6 4.3901 5.5529 -1.2506 11 6 4.3925 5.5534 1.2479 12 6 6.4273 6.2187 -0.0028 13 1 7.4269 5.8106 -0.0253 14 6 6.2409 7.5846 0.0253 15 7 7.2428 8.3909 -0.2499 16 14 4.5651 8.2899 0.4543 17 1 4.4267 8.3742 1.9304 18 1 4.4343 9.6473 -0.1335 19 1 3.5025 7.4089 -0.0931 20 6 3.6249 -0.6531 -0.0015 21 6 2.2940 -1.0985 -0.0005 22 6 1.8297 -2.5322 -0.0059 23 8 2.9647 -3.4004 -0.0114 24 1 -0.3633 -0.0008 1.0276 25 1 -0.3634 0.8904 -0.5132 26 1 -0.3633 -0.8896 -0.5145 27 1 3.6610 3.3123 -0.0005 28 1 6.3199 3.6593 0.8871 29 1 6.3177 3.6595 -0.8929 30 1 3.4488 5.0094 -1.1698 31 1 4.1870 6.6203 -1.3382 32 1 4.9318 5.2125 -2.1330 33 1 4.9952 5.3700 2.1374 34 1 4.0504 6.5883 1.2483 35 1 3.5310 4.8856 1.2489 36 1 7.1116 9.3517 -0.2305 37 1 4.5112 -1.2703 -0.0018 38 1 1.2303 -2.7234 0.8842 39 1 1.2275 -2.7158 -0.8957 40 1 2.7404 -4.3410 -0.0147 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601626308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:16 Heat of formation + Delta-G solvation = -63.265418 kcal Electronic energy + Delta-G solvation = -22082.554074 eV Core-core repulsion = 18671.736287 eV Total energy + Delta-G solvation = -3410.817788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.83417 -39.23884 -37.28759 -36.75162 -33.86422 -33.21436 -32.15669 -31.47350 -28.26958 -26.80408 -26.37980 -25.38623 -24.68681 -22.15203 -21.12759 -19.67890 -19.24062 -17.87148 -17.50827 -16.69103 -16.15027 -15.70002 -15.23408 -15.09428 -15.01807 -14.65928 -14.26456 -13.70723 -13.47107 -13.40221 -13.08582 -12.99358 -12.87952 -12.61339 -12.22662 -12.15498 -12.04369 -11.85602 -11.33893 -10.84709 -10.46467 -10.37842 -10.17784 -10.07313 -9.93192 -9.71699 -9.13731 -8.74085 -8.69512 -8.48076 -8.38435 -6.15131 -4.12562 1.05696 2.14355 2.56213 3.24227 3.31438 3.38555 3.40376 3.53491 3.81297 4.35406 4.43267 4.69372 4.85627 4.88644 5.01532 5.08144 5.14320 5.15555 5.32904 5.53286 5.74911 5.77207 5.87471 6.03491 6.04973 6.28268 6.35699 6.44779 6.51159 6.60584 6.66755 6.69145 6.81069 6.94524 7.19518 7.28714 7.41523 7.70843 7.83040 8.37991 8.46456 8.90166 9.48625 10.97912 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032696 B = 0.003736 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.174995 B = 7492.419135 C = 8130.794877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.017 3.983 3 O -0.158 6.158 4 C -0.073 4.073 5 C 0.594 3.406 6 O -0.525 6.525 7 N -0.709 5.709 8 C 0.140 3.860 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.149 4.149 12 C -0.514 4.514 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.891 5.891 16 Si 0.885 3.115 17 H -0.285 1.285 18 H -0.305 1.305 19 H -0.249 1.249 20 C -0.098 4.098 21 C -0.199 4.199 22 C 0.153 3.847 23 O -0.565 6.565 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.401 0.599 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.022 0.978 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.029 0.971 36 H 0.265 0.735 37 H 0.162 0.838 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.176 -19.392 0.522 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 O -0.054 6.054 4 C -0.124 4.124 5 C 0.378 3.622 6 O -0.404 6.404 7 N -0.359 5.359 8 C 0.018 3.982 9 C 0.027 3.973 10 C -0.200 4.200 11 C -0.206 4.206 12 C -0.552 4.552 13 H 0.096 0.904 14 C -0.127 4.127 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.213 1.213 18 H -0.234 1.234 19 H -0.175 1.175 20 C -0.119 4.119 21 C -0.200 4.200 22 C 0.076 3.924 23 O -0.371 6.371 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.237 0.763 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.180 0.820 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -16.034 -18.596 0.497 24.559 hybrid contribution -1.520 0.103 0.319 1.556 sum -17.553 -18.493 0.817 25.511 Atomic orbital electron populations 1.20407 0.84616 1.04455 1.03927 1.22320 0.93952 0.83585 1.03701 1.84036 1.16203 1.34222 1.70897 1.22345 0.81760 0.94807 1.13533 1.16570 0.85770 0.81952 0.77861 1.90872 1.21885 1.76203 1.51437 1.46264 1.11952 1.05131 1.72533 1.21640 0.85983 0.88635 1.01970 1.18728 0.95461 0.91501 0.91578 1.22305 0.97195 1.01273 0.99276 1.22369 0.98530 0.99349 1.00312 1.20709 0.92245 0.90019 1.52186 0.90430 1.24968 0.96583 0.96953 0.94169 1.69950 1.32072 1.03702 1.46992 0.87297 0.85926 0.76725 0.78302 1.21318 1.23367 1.17501 1.21662 0.98092 0.92397 0.99708 1.19911 0.93535 0.95019 1.11557 1.20197 0.87242 0.85239 0.99758 1.86517 1.32760 1.20067 1.97707 0.89529 0.89881 0.89270 0.76321 0.91485 0.91390 0.95916 0.92425 0.93315 0.92693 0.93957 0.95156 0.92529 0.81999 0.92488 0.92514 0.77045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.21 36.00 0.37 -0.10 16 2 C 0.02 0.19 7.31 -35.41 -0.26 -0.07 16 3 O -0.16 -2.18 10.40 5.01 0.05 -2.13 16 4 C -0.07 -1.15 7.13 -36.80 -0.26 -1.41 16 5 C 0.59 10.89 7.79 -12.86 -0.10 10.79 16 6 O -0.53 -11.20 16.86 5.20 0.09 -11.11 16 7 N -0.71 -12.66 5.00 -61.62 -0.31 -12.97 16 8 C 0.14 2.87 4.49 -4.04 -0.02 2.85 16 9 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 10 C -0.14 -2.97 7.53 37.16 0.28 -2.69 16 11 C -0.15 -3.08 7.52 37.16 0.28 -2.80 16 12 C -0.51 -13.89 8.62 -34.44 -0.30 -14.19 16 13 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 14 C 0.08 2.12 5.32 -17.81 -0.09 2.03 16 15 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 16 Si 0.88 21.20 22.79 -169.99 -3.87 17.33 16 17 H -0.29 -6.82 7.10 56.52 0.40 -6.41 16 18 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.25 -5.44 4.65 56.52 0.26 -5.18 16 20 C -0.10 -1.44 9.97 -39.40 -0.39 -1.84 16 21 C -0.20 -2.33 6.10 -104.93 -0.64 -2.97 16 22 C 0.15 1.22 7.08 36.01 0.25 1.48 16 23 O -0.57 -5.05 13.08 -35.23 -0.46 -5.51 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.35 7.86 -51.93 -0.41 -0.06 16 27 H 0.40 6.50 6.01 -40.82 -0.25 6.25 16 28 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.02 0.40 7.13 -51.93 -0.37 0.03 16 31 H 0.06 1.26 4.30 -51.93 -0.22 1.04 16 32 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.04 0.92 2.25 -51.93 -0.12 0.80 16 35 H 0.03 0.53 6.86 -51.93 -0.36 0.17 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 37 H 0.16 2.46 7.98 -52.49 -0.42 2.04 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.38 1.34 9.12 45.56 0.42 1.76 16 LS Contribution 323.44 15.07 4.87 4.87 Total: -1.00 -33.63 323.44 -4.61 -38.24 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.80 Total: 5.60 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.96 Total: -8.37 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.47 Total: -38.92 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.32 Total: -18.75 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -3.87 Total: 17.33 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.63 -4.61 -38.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601626308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.021 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds