Wall clock time and date at job start Tue Mar 31 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50692 * 109.47264 * 2 1 4 4 O 1.33920 * 125.60810 * 270.25962 * 3 2 1 5 5 C 1.34930 * 109.38262 * 180.15177 * 4 3 2 6 6 C 1.46468 * 126.00063 * 179.89043 * 5 4 3 7 7 O 1.21620 * 120.00478 * 179.97438 * 6 5 4 8 8 O 1.34904 * 119.99467 * 359.68797 * 6 5 4 9 9 C 1.45201 * 116.99709 * 179.97438 * 8 6 5 10 10 C 1.36649 * 108.00870 * 359.62545 * 5 4 3 11 11 C 1.35166 * 125.61660 * 89.99740 * 3 2 1 12 12 C 1.50708 * 126.43170 * 359.97438 * 11 3 2 13 13 N 1.46901 * 109.47289 * 79.99665 * 12 11 3 14 14 C 1.46894 * 110.99872 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47316 * 35.00191 * 14 13 12 16 16 C 1.53004 * 109.47177 * 275.00418 * 14 13 12 17 17 C 1.50702 * 109.47345 * 155.00212 * 14 13 12 18 18 H 1.08001 * 119.99588 * 5.45929 * 17 14 13 19 19 C 1.37870 * 120.00396 * 185.45999 * 17 14 13 20 20 N 1.31515 * 119.99876 * 9.55038 * 19 17 14 21 21 Si 1.86801 * 120.00288 * 189.55204 * 19 17 14 22 22 H 1.48506 * 109.47009 * 84.99176 * 21 19 17 23 23 H 1.48492 * 109.47135 * 204.99577 * 21 19 17 24 24 H 1.48504 * 109.46713 * 324.99368 * 21 19 17 25 25 H 1.09000 * 109.47023 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46857 * 300.00778 * 1 2 3 27 27 H 1.09006 * 109.46622 * 60.00182 * 1 2 3 28 28 H 1.08998 * 109.47335 * 239.99056 * 2 1 3 29 29 H 1.09006 * 109.46622 * 119.99818 * 2 1 3 30 30 H 1.08997 * 109.47224 * 60.00296 * 9 8 6 31 31 H 1.09005 * 109.47110 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.47309 * 300.00259 * 9 8 6 33 33 H 1.07994 * 126.64966 * 180.22779 * 10 5 4 34 34 H 1.09003 * 109.46888 * 199.99943 * 12 11 3 35 35 H 1.08999 * 109.46588 * 319.99628 * 12 11 3 36 36 H 1.00900 * 110.99475 * 56.05136 * 13 12 11 37 37 H 1.08991 * 109.47282 * 63.68858 * 16 14 13 38 38 H 1.09004 * 109.47401 * 183.69296 * 16 14 13 39 39 H 1.09004 * 109.46834 * 303.69017 * 16 14 13 40 40 H 0.97001 * 120.00145 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2877 2.1575 -1.0888 5 6 2.7244 3.3773 -0.7118 6 6 3.1096 4.4690 -1.6090 7 8 3.4892 5.5290 -1.1491 8 8 3.0490 4.2968 -2.9456 9 6 3.4453 5.4216 -3.7738 10 6 2.7384 3.4174 0.6540 11 6 2.2948 2.1629 1.0988 12 6 2.1393 1.7251 2.5325 13 7 3.2982 0.9120 2.9247 14 6 3.1807 0.4660 4.3193 15 1 2.1337 0.2703 4.5512 16 6 3.7139 1.5569 5.2503 17 6 3.9823 -0.7954 4.5127 18 1 4.5950 -1.1744 3.7081 19 6 3.9335 -1.4655 5.7166 20 7 3.0515 -1.1171 6.6278 21 14 5.1202 -2.8682 6.0536 22 1 6.3994 -2.3206 6.5725 23 1 4.5293 -3.7852 7.0611 24 1 5.3752 -3.6139 4.7949 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.4813 5.6837 -3.5590 31 1 3.3501 5.1501 -4.8252 32 1 2.8026 6.2753 -3.5590 33 1 3.0338 4.2528 1.2714 34 1 2.0770 2.6030 3.1757 35 1 1.2293 1.1341 2.6352 36 1 4.1599 1.4159 2.7772 37 1 3.0934 2.4483 5.1583 38 1 3.6876 1.2006 6.2801 39 1 4.7406 1.7990 4.9757 40 1 3.0169 -1.5887 7.4747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:42 Heat of formation + Delta-G solvation = -79.694090 kcal Electronic energy + Delta-G solvation = -21826.752845 eV Core-core repulsion = 18415.222656 eV Total energy + Delta-G solvation = -3411.530188 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.72895 -40.29955 -36.69554 -36.39387 -34.24955 -33.28904 -32.01706 -29.93467 -28.59423 -27.51037 -25.22117 -24.66163 -24.24252 -21.99233 -21.14509 -20.23103 -19.80316 -17.95744 -17.18640 -16.87081 -16.19350 -15.94477 -15.62019 -14.75936 -14.62683 -14.11435 -14.03136 -13.51146 -13.45494 -13.28813 -13.10218 -12.72874 -12.43599 -12.29479 -12.04317 -11.79759 -11.63352 -11.38989 -11.06616 -11.02730 -10.97322 -10.88311 -10.80057 -10.52684 -10.22712 -9.97827 -9.66150 -9.08461 -8.40430 -8.34316 -7.30705 -6.01995 -4.01528 0.82373 2.21346 2.28635 2.85256 2.96279 3.32736 3.39131 3.42516 4.44155 4.53979 4.83562 4.85427 4.86296 4.92627 5.17200 5.21796 5.29464 5.30954 5.35868 5.48300 5.59682 5.73340 5.88424 5.94066 6.01898 6.08672 6.10034 6.23672 6.28777 6.49844 6.61791 6.74933 6.97117 7.01123 7.29827 7.51696 7.58335 7.86940 8.18527 8.49774 8.58076 9.04937 9.62323 11.07219 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023985 B = 0.003585 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.133303 B = 7807.526895 C = 8255.731709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C 0.065 3.935 4 O -0.153 6.153 5 C -0.091 4.091 6 C 0.557 3.443 7 O -0.494 6.494 8 O -0.350 6.350 9 C 0.036 3.964 10 C -0.085 4.085 11 C -0.180 4.180 12 C 0.126 3.874 13 N -0.678 5.678 14 C 0.210 3.790 15 H 0.042 0.958 16 C -0.164 4.164 17 C -0.497 4.497 18 H 0.062 0.938 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.274 1.274 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.160 0.840 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.326 0.674 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.030 0.970 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 8.299 -16.758 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C 0.011 3.989 4 O -0.049 6.049 5 C -0.140 4.140 6 C 0.403 3.597 7 O -0.383 6.383 8 O -0.267 6.267 9 C -0.057 4.057 10 C -0.106 4.106 11 C -0.182 4.182 12 C -0.003 4.003 13 N -0.308 5.308 14 C 0.102 3.898 15 H 0.060 0.940 16 C -0.224 4.224 17 C -0.536 4.536 18 H 0.081 0.919 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.721 3.279 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.199 1.199 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.178 0.822 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.143 0.857 37 H 0.029 0.971 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.923 7.907 -17.037 19.188 hybrid contribution 1.004 0.492 0.863 1.412 sum -2.919 8.399 -16.174 18.457 Atomic orbital electron populations 1.21762 0.93797 1.02650 1.02304 1.20368 0.96268 0.86525 1.05786 1.22902 0.98386 0.94512 0.83102 1.84058 1.64543 1.21503 1.34812 1.20344 1.15519 0.85859 0.92280 1.19203 0.74526 0.84984 0.81021 1.90935 1.44222 1.25953 1.77235 1.86675 1.79152 1.43103 1.17755 1.23326 1.00944 0.87664 0.93787 1.21912 0.97899 0.98742 0.92012 1.20379 1.07185 0.93222 0.97400 1.20281 0.96717 0.95971 0.87352 1.60877 1.02316 1.40998 1.26634 1.19211 0.97704 0.92510 0.80335 0.94028 1.22396 0.97999 0.97461 1.04508 1.21084 1.26621 1.07747 0.98150 0.91949 1.24933 0.95539 0.97304 0.96476 1.69961 1.33820 1.42278 1.07371 0.86601 0.81346 0.81984 0.77998 1.20764 1.21485 1.19908 0.91256 0.91920 0.92750 0.89994 0.86170 0.91608 0.87819 0.91665 0.82221 0.95069 0.90447 0.85703 0.97091 0.90988 0.95131 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.90 37.16 0.37 -1.22 16 2 C -0.05 -0.66 6.25 -27.88 -0.17 -0.83 16 3 C 0.06 0.94 6.57 -35.41 -0.23 0.71 16 4 O -0.15 -2.30 10.67 4.74 0.05 -2.25 16 5 C -0.09 -1.36 7.18 -36.84 -0.26 -1.62 16 6 C 0.56 7.97 7.93 34.04 0.27 8.24 16 7 O -0.49 -7.74 16.66 -19.36 -0.32 -8.06 16 8 O -0.35 -4.34 10.58 -42.50 -0.45 -4.79 16 9 C 0.04 0.30 10.57 101.05 1.07 1.36 16 10 C -0.09 -1.28 10.57 -39.38 -0.42 -1.69 16 11 C -0.18 -2.80 5.65 -104.93 -0.59 -3.39 16 12 C 0.13 2.16 5.48 -4.97 -0.03 2.13 16 13 N -0.68 -13.65 6.22 -109.21 -0.68 -14.33 16 14 C 0.21 5.04 2.44 -68.86 -0.17 4.87 16 15 H 0.04 1.10 7.74 -51.93 -0.40 0.70 16 16 C -0.16 -3.78 9.04 37.16 0.34 -3.45 16 17 C -0.50 -13.34 8.76 -34.44 -0.30 -13.64 16 18 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 19 C 0.06 1.59 5.17 -17.82 -0.09 1.50 16 20 N -0.90 -25.28 12.16 55.43 0.67 -24.61 16 21 Si 0.89 21.12 29.55 -169.99 -5.02 16.10 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.12 1.72 7.86 -51.93 -0.41 1.31 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.03 0.53 7.51 -51.93 -0.39 0.14 16 35 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 36 H 0.33 6.45 8.42 -39.29 -0.33 6.12 16 37 H 0.01 0.21 7.55 -51.93 -0.39 -0.18 16 38 H 0.07 1.84 6.83 -51.93 -0.35 1.48 16 39 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -29.75 345.86 -6.81 -36.56 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.04 Total: 3.20 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -0.23 Total: -7.02 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: -0.01 Total: -38.94 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.72 Total: -15.11 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.75 -6.81 -36.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.133 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds