Wall clock time and date at job start Tue Mar 31 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47289 * 2 1 4 4 O 1.33922 * 125.60744 * 270.31174 * 3 2 1 5 5 C 1.34928 * 109.37892 * 180.17285 * 4 3 2 6 6 C 1.46476 * 125.99572 * 179.82274 * 5 4 3 7 7 O 1.21619 * 120.00037 * 179.41206 * 6 5 4 8 8 O 1.34902 * 119.99655 * 359.69474 * 6 5 4 9 9 C 1.45198 * 116.99577 * 179.97438 * 8 6 5 10 10 C 1.36642 * 108.01152 * 359.56342 * 5 4 3 11 11 C 1.35164 * 125.61477 * 89.99868 * 3 2 1 12 12 C 1.50702 * 126.43401 * 0.02562 * 11 3 2 13 13 N 1.46898 * 109.47281 * 79.99513 * 12 11 3 14 14 C 1.46900 * 110.99853 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.47591 * 325.00288 * 14 13 12 16 16 C 1.53008 * 109.47252 * 85.00179 * 14 13 12 17 17 C 1.50700 * 109.47069 * 205.00082 * 14 13 12 18 18 H 1.07998 * 120.00186 * 0.02562 * 17 14 13 19 19 C 1.37880 * 120.00075 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99797 * 0.02562 * 19 17 14 21 21 Si 1.86796 * 120.00131 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46988 * 90.00386 * 21 19 17 23 23 H 1.48499 * 109.47278 * 209.99875 * 21 19 17 24 24 H 1.48495 * 109.46980 * 330.00005 * 21 19 17 25 25 H 1.08997 * 109.46805 * 300.00259 * 1 2 3 26 26 H 1.08997 * 109.46661 * 60.00121 * 1 2 3 27 27 H 1.09003 * 109.46939 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47246 * 239.99583 * 2 1 3 29 29 H 1.09002 * 109.47101 * 120.00034 * 2 1 3 30 30 H 1.09005 * 109.46867 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47571 * 299.99709 * 9 8 6 32 32 H 1.08998 * 109.47370 * 59.99950 * 9 8 6 33 33 H 1.07995 * 126.64978 * 180.24669 * 10 5 4 34 34 H 1.08998 * 109.47014 * 200.00282 * 12 11 3 35 35 H 1.09003 * 109.46921 * 319.99551 * 12 11 3 36 36 H 1.00898 * 111.00103 * 303.95354 * 13 12 11 37 37 H 1.08999 * 109.47088 * 179.97438 * 16 14 13 38 38 H 1.09000 * 109.46709 * 300.00180 * 16 14 13 39 39 H 1.09001 * 109.46733 * 59.99584 * 16 14 13 40 40 H 0.97001 * 120.00338 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2867 2.1579 -1.0888 5 6 2.7242 3.3773 -0.7117 6 6 3.1102 4.4688 -1.6090 7 8 3.4806 5.5320 -1.1491 8 8 3.0493 4.2967 -2.9456 9 6 3.4463 5.4213 -3.7738 10 6 2.7384 3.4174 0.6540 11 6 2.2948 2.1629 1.0988 12 6 2.1404 1.7248 2.5325 13 7 3.3000 0.9124 2.9239 14 6 3.1835 0.4661 4.3186 15 1 2.6976 1.2427 4.9092 16 6 2.3493 -0.8153 4.3760 17 6 4.5574 0.1965 4.8762 18 1 5.4298 0.3426 4.2566 19 6 4.7005 -0.2365 6.1773 20 7 3.6380 -0.4149 6.9316 21 14 6.4035 -0.5700 6.8688 22 1 6.9390 0.6704 7.4850 23 1 6.3197 -1.6375 7.8976 24 1 7.3054 -1.0079 5.7734 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3509 5.1498 -4.8252 31 1 2.8042 6.2754 -3.5590 32 1 4.4825 5.6827 -3.5591 33 1 3.0340 4.2527 1.2714 34 1 2.0777 2.6024 3.1758 35 1 1.2308 1.1331 2.6356 36 1 3.4177 0.1268 2.3018 37 1 2.2633 -1.1467 5.4109 38 1 1.3557 -0.6203 3.9727 39 1 2.8352 -1.5919 3.7854 40 1 3.7387 -0.7192 7.8472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:46 Heat of formation + Delta-G solvation = -77.594589 kcal Electronic energy + Delta-G solvation = -21854.240422 eV Core-core repulsion = 18442.801275 eV Total energy + Delta-G solvation = -3411.439147 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.75130 -40.28624 -36.67835 -36.47859 -34.31626 -33.34800 -32.03168 -29.95319 -28.53363 -27.50368 -25.24519 -24.81864 -24.19480 -22.07379 -21.19647 -20.22144 -19.78093 -17.93919 -17.17100 -16.87178 -16.19796 -16.00400 -15.64441 -14.80246 -14.77308 -14.26733 -14.01224 -13.57105 -13.43366 -13.31555 -13.06023 -12.73712 -12.47735 -12.39652 -12.09874 -11.75764 -11.68699 -11.41829 -11.10604 -11.04963 -10.98111 -10.91110 -10.75413 -10.55695 -10.16252 -10.00418 -9.64925 -9.04053 -8.46553 -8.36848 -7.26958 -5.99418 -4.02583 0.82193 2.20805 2.25457 2.87626 2.93413 3.33318 3.39476 3.43884 4.44378 4.47129 4.77767 4.84477 4.85587 4.94264 5.01701 5.11189 5.24069 5.31999 5.32839 5.43893 5.48578 5.68329 5.73819 5.83245 5.90261 6.01751 6.06618 6.13268 6.23671 6.49354 6.65164 6.78960 6.92217 7.04752 7.31769 7.52852 7.71010 7.87054 8.24436 8.49270 8.58152 9.04815 9.62966 11.07562 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020639 B = 0.003756 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.321665 B = 7452.279635 C = 8390.787892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C 0.039 3.961 4 O -0.152 6.152 5 C -0.089 4.089 6 C 0.557 3.443 7 O -0.491 6.491 8 O -0.351 6.351 9 C 0.036 3.964 10 C -0.073 4.073 11 C -0.169 4.169 12 C 0.125 3.875 13 N -0.678 5.678 14 C 0.211 3.789 15 H 0.035 0.965 16 C -0.170 4.170 17 C -0.495 4.495 18 H 0.063 0.937 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.164 0.836 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.324 0.676 37 H 0.090 0.910 38 H 0.005 0.995 39 H 0.028 0.972 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.189 4.674 -18.186 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.014 4.014 4 O -0.048 6.048 5 C -0.138 4.138 6 C 0.402 3.598 7 O -0.380 6.380 8 O -0.268 6.268 9 C -0.057 4.057 10 C -0.093 4.093 11 C -0.170 4.170 12 C -0.004 4.004 13 N -0.308 5.308 14 C 0.103 3.897 15 H 0.053 0.947 16 C -0.229 4.229 17 C -0.534 4.534 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.181 0.819 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.024 0.976 39 H 0.047 0.953 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.755 5.429 -18.037 19.696 hybrid contribution 0.349 -0.589 0.428 0.807 sum -5.406 4.840 -17.609 19.045 Atomic orbital electron populations 1.21772 0.93512 1.02677 1.02693 1.20261 0.96696 0.86842 1.04873 1.22784 1.00344 0.94725 0.83571 1.84033 1.64723 1.21584 1.34457 1.20401 1.15281 0.85750 0.92386 1.19187 0.74549 0.85026 0.81001 1.90944 1.44244 1.25653 1.77194 1.86668 1.79137 1.43191 1.17766 1.23325 1.00978 0.87674 0.93745 1.21899 0.96809 0.98808 0.91748 1.20391 1.05968 0.93680 0.96981 1.20299 0.93409 0.98465 0.88275 1.60879 1.38024 1.25860 1.06061 1.19206 0.95837 0.91893 0.82725 0.94715 1.22446 0.95830 1.00494 1.04133 1.21157 0.92381 1.43198 0.96653 0.91919 1.24943 0.96836 0.95747 0.96980 1.69876 1.28213 1.47582 1.08110 0.86504 0.84451 0.77821 0.78652 1.20751 1.21435 1.19930 0.91855 0.92310 0.91276 0.89562 0.88063 0.87848 0.91648 0.91578 0.81861 0.90403 0.94940 0.85945 0.89148 0.97556 0.95321 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.90 37.16 0.37 -1.07 16 2 C -0.05 -0.55 6.25 -27.88 -0.17 -0.73 16 3 C 0.04 0.55 6.57 -35.40 -0.23 0.32 16 4 O -0.15 -2.25 10.67 4.74 0.05 -2.20 16 5 C -0.09 -1.35 7.18 -36.84 -0.26 -1.61 16 6 C 0.56 8.08 7.93 34.05 0.27 8.35 16 7 O -0.49 -7.86 16.66 -19.36 -0.32 -8.18 16 8 O -0.35 -4.37 10.58 -42.49 -0.45 -4.82 16 9 C 0.04 0.30 10.57 101.05 1.07 1.37 16 10 C -0.07 -1.12 10.57 -39.38 -0.42 -1.54 16 11 C -0.17 -2.64 5.65 -104.94 -0.59 -3.23 16 12 C 0.12 2.16 5.48 -4.98 -0.03 2.13 16 13 N -0.68 -13.95 6.22 -109.22 -0.68 -14.63 16 14 C 0.21 5.13 2.57 -68.86 -0.18 4.95 16 15 H 0.03 0.93 7.80 -51.93 -0.41 0.53 16 16 C -0.17 -3.88 8.94 37.16 0.33 -3.55 16 17 C -0.50 -13.55 8.84 -34.44 -0.30 -13.85 16 18 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 19 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 20 N -0.90 -25.35 11.32 55.43 0.63 -24.72 16 21 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.10 1.19 7.01 -51.93 -0.36 0.83 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 34 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 35 H 0.03 0.54 7.42 -51.93 -0.39 0.15 16 36 H 0.32 6.27 7.61 -39.29 -0.30 5.97 16 37 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 38 H 0.01 0.11 7.45 -51.93 -0.39 -0.28 16 39 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -30.48 342.76 -6.80 -37.28 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.92 Total: 2.73 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -0.25 Total: -7.03 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.05 Total: -39.35 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.72 Total: -15.20 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.48 -6.80 -37.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.317 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds