Wall clock time and date at job start Tue Mar 31 2020 05:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34897 * 117.00506 * 2 1 4 4 O 1.21629 * 119.99629 * 0.02562 * 3 2 1 5 5 C 1.46470 * 120.00481 * 180.02562 * 3 2 1 6 6 O 1.34937 * 125.99086 * 0.34263 * 5 3 2 7 7 C 1.33914 * 109.37741 * 180.13906 * 6 5 3 8 8 C 1.50698 * 125.61050 * 179.82764 * 7 6 5 9 9 H 1.09004 * 109.47172 * 159.69226 * 8 7 6 10 10 C 1.52998 * 109.47352 * 279.69542 * 8 7 6 11 11 N 1.46904 * 109.47191 * 39.69445 * 8 7 6 12 12 C 1.46895 * 110.99921 * 154.99610 * 11 8 7 13 13 H 1.09004 * 109.47258 * 35.00406 * 12 11 8 14 14 C 1.53000 * 109.47363 * 275.00164 * 12 11 8 15 15 C 1.50702 * 109.46770 * 155.00082 * 12 11 8 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99942 * 179.72214 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 12 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.35170 * 108.78294 * 359.56630 * 7 6 5 24 24 C 1.36637 * 125.99836 * 180.02562 * 5 3 2 25 25 C 1.50701 * 126.64715 * 0.06486 * 24 5 3 26 26 H 1.08997 * 109.47299 * 59.99951 * 1 2 3 27 27 H 1.08999 * 109.47082 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46553 * 300.00062 * 1 2 3 29 29 H 1.08997 * 109.47387 * 179.97438 * 10 8 7 30 30 H 1.09005 * 109.47024 * 300.00018 * 10 8 7 31 31 H 1.09004 * 109.47239 * 59.99725 * 10 8 7 32 32 H 1.00904 * 110.99514 * 31.04928 * 11 8 7 33 33 H 1.09004 * 109.47084 * 299.99765 * 14 12 11 34 34 H 1.08994 * 109.47175 * 60.00337 * 14 12 11 35 35 H 1.09001 * 109.47192 * 180.02562 * 14 12 11 36 36 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 37 37 H 1.08001 * 126.44261 * 180.28379 * 23 7 6 38 38 H 1.09004 * 109.47501 * 269.98427 * 25 24 5 39 39 H 1.09000 * 109.46955 * 29.98633 * 25 24 5 40 40 H 1.09002 * 109.47314 * 149.98408 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4021 2.2220 0.0005 5 6 3.5272 1.2785 -0.0006 6 8 4.3762 0.2298 -0.0076 7 6 5.6377 0.6792 -0.0027 8 6 6.8755 -0.1803 -0.0042 9 1 7.7244 0.4058 -0.3562 10 6 7.1527 -0.6777 1.4159 11 7 6.6717 -1.3307 -0.8948 12 6 7.9546 -1.8444 -1.3929 13 1 8.7130 -1.7425 -0.6166 14 6 8.3786 -1.0468 -2.6279 15 6 7.8047 -3.2981 -1.7609 16 1 6.8516 -3.7909 -1.6375 17 6 8.8827 -3.9974 -2.2610 18 7 10.0432 -3.3972 -2.4116 19 14 8.6948 -5.7972 -2.7242 20 1 7.2997 -6.2329 -2.4617 21 1 9.0046 -5.9722 -4.1661 22 1 9.6308 -6.6173 -1.9139 23 6 5.6181 2.0308 -0.0020 24 6 4.2713 2.4245 -0.0001 25 6 3.7472 3.8374 0.0024 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 8.0478 -1.2998 1.4147 30 1 7.3039 0.1759 2.0768 31 1 6.3038 -1.2638 1.7678 32 1 6.0567 -1.0922 -1.6584 33 1 7.6203 -1.1489 -3.4042 34 1 8.4870 0.0045 -2.3617 35 1 9.3303 -1.4284 -2.9977 36 1 10.8017 -3.8893 -2.7631 37 1 6.4775 2.6849 -0.0027 38 1 3.6196 4.1795 -1.0247 39 1 2.7870 3.8678 0.5173 40 1 4.4558 4.4869 0.5163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602867064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:25 Heat of formation + Delta-G solvation = -73.909155 kcal Electronic energy + Delta-G solvation = -22117.187133 eV Core-core repulsion = 18705.907798 eV Total energy + Delta-G solvation = -3411.279335 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.74221 -40.24101 -36.82469 -36.64138 -34.10636 -33.38435 -31.18496 -29.53896 -28.51847 -27.16149 -26.98874 -25.19291 -23.84650 -21.77918 -21.18202 -20.16213 -19.22720 -18.24968 -17.08462 -16.83391 -16.62940 -15.78236 -15.40156 -14.95033 -14.39695 -14.14011 -13.57065 -13.48797 -13.16899 -13.16220 -12.99894 -12.78819 -12.60095 -12.35162 -12.17724 -11.98185 -11.65150 -11.43534 -11.22233 -10.97685 -10.94036 -10.77120 -10.69060 -10.49120 -10.16288 -9.90594 -9.66261 -9.05412 -8.51400 -8.39067 -7.40763 -6.01751 -4.04535 0.82567 2.26209 2.29076 2.81110 3.01920 3.31030 3.39004 3.44927 4.39222 4.50971 4.67936 4.76347 4.92901 5.00942 5.09783 5.30072 5.31808 5.33632 5.48160 5.54722 5.56464 5.69811 5.72087 5.89847 5.96083 6.11557 6.18611 6.28551 6.38120 6.61012 6.65282 6.77147 6.93437 7.01288 7.26373 7.57810 7.68273 7.84150 8.19147 8.40227 8.52198 9.02979 9.60900 11.05469 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.004021 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.728220 B = 6962.321625 C = 7803.964948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.345 6.345 3 C 0.557 3.443 4 O -0.496 6.496 5 C -0.093 4.093 6 O -0.130 6.130 7 C 0.068 3.932 8 C 0.154 3.846 9 H 0.073 0.927 10 C -0.137 4.137 11 N -0.674 5.674 12 C 0.210 3.790 13 H 0.039 0.961 14 C -0.172 4.172 15 C -0.493 4.493 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.236 4.236 24 C -0.065 4.065 25 C -0.096 4.096 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.332 0.668 33 H 0.029 0.971 34 H 0.005 0.995 35 H 0.092 0.908 36 H 0.259 0.741 37 H 0.158 0.842 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.301 11.483 5.610 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.261 6.261 3 C 0.403 3.597 4 O -0.386 6.386 5 C -0.143 4.143 6 O -0.024 6.024 7 C 0.013 3.987 8 C 0.044 3.956 9 H 0.091 0.909 10 C -0.194 4.194 11 N -0.306 5.306 12 C 0.102 3.898 13 H 0.057 0.943 14 C -0.231 4.231 15 C -0.532 4.532 16 H 0.083 0.917 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.256 4.256 24 C -0.067 4.067 25 C -0.152 4.152 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.048 0.952 34 H 0.024 0.976 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.176 0.824 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.508 10.940 6.071 17.692 hybrid contribution 0.175 -0.105 -1.039 1.058 sum -12.333 10.835 5.032 17.170 Atomic orbital electron populations 1.23328 0.75686 1.04072 1.02566 1.86720 1.23681 1.31790 1.83942 1.19174 0.85547 0.81982 0.72949 1.90883 1.64541 1.35765 1.47435 1.20360 0.87836 0.86178 1.19969 1.84202 1.15091 1.33641 1.69503 1.23489 0.84229 0.93772 0.97216 1.20376 0.87456 0.90586 0.97208 0.90901 1.21823 1.03404 1.00715 0.93499 1.61010 1.17710 1.28836 1.23020 1.19288 0.84554 0.94038 0.91871 0.94318 1.22469 1.04279 0.95717 1.00631 1.21160 0.96882 0.94208 1.40971 0.91738 1.24939 0.95248 0.98455 0.95850 1.69885 1.01016 1.36174 1.46679 0.86442 0.78196 0.84916 0.77864 1.19689 1.21229 1.21125 1.21480 0.97026 0.94363 1.12708 1.20572 0.92464 0.95536 0.98119 1.20461 1.01991 0.89780 1.03013 0.91678 0.87731 0.91742 0.90731 0.93082 0.91766 0.85098 0.95226 0.97613 0.88986 0.93093 0.82399 0.90561 0.89791 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.41 16 2 O -0.35 -4.79 10.58 -42.48 -0.45 -5.23 16 3 C 0.56 8.25 7.93 34.05 0.27 8.52 16 4 O -0.50 -7.42 14.54 -19.36 -0.28 -7.70 16 5 C -0.09 -1.46 7.18 -36.85 -0.26 -1.72 16 6 O -0.13 -2.24 10.65 4.74 0.05 -2.19 16 7 C 0.07 1.08 5.81 -35.40 -0.21 0.87 16 8 C 0.15 2.64 2.88 -68.86 -0.20 2.44 16 9 H 0.07 1.22 7.10 -51.93 -0.37 0.85 16 10 C -0.14 -2.18 9.38 37.16 0.35 -1.83 16 11 N -0.67 -13.99 6.02 -102.17 -0.62 -14.61 16 12 C 0.21 5.05 2.39 -68.87 -0.16 4.89 16 13 H 0.04 1.00 7.11 -51.93 -0.37 0.63 16 14 C -0.17 -3.99 8.92 37.16 0.33 -3.66 16 15 C -0.49 -13.36 8.84 -34.44 -0.30 -13.67 16 16 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 17 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 18 N -0.90 -25.08 11.31 55.43 0.63 -24.45 16 19 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.24 -3.26 10.72 -39.89 -0.43 -3.69 16 24 C -0.06 -0.90 6.20 -104.42 -0.65 -1.54 16 25 C -0.10 -1.05 9.81 36.01 0.35 -0.70 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.28 7.43 -51.93 -0.39 0.89 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.33 6.83 8.09 -39.29 -0.32 6.52 16 33 H 0.03 0.67 8.13 -51.93 -0.42 0.24 16 34 H 0.00 0.10 7.43 -51.93 -0.39 -0.28 16 35 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.97 6.45 -51.93 -0.33 0.64 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -29.56 338.85 -6.34 -35.91 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.83 Total: 4.18 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 0.06 Total: -7.26 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.01 Total: -39.06 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.68 Total: -15.12 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.56 -6.34 -35.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.004 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds