Wall clock time and date at job start Tue Mar 31 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34898 * 116.99933 * 2 1 4 4 O 1.21620 * 119.99908 * 0.02562 * 3 2 1 5 5 C 1.46470 * 119.99947 * 180.02562 * 3 2 1 6 6 O 1.34930 * 125.99662 * 0.02562 * 5 3 2 7 7 C 1.33908 * 109.38186 * 179.74850 * 6 5 3 8 8 C 1.50705 * 125.60980 * 180.23958 * 7 6 5 9 9 H 1.08999 * 109.46827 * 160.16545 * 8 7 6 10 10 C 1.52993 * 109.47015 * 280.16714 * 8 7 6 11 11 N 1.46899 * 109.47252 * 40.17010 * 8 7 6 12 12 C 1.46891 * 111.00322 * 153.11128 * 11 8 7 13 13 H 1.09004 * 109.47252 * 33.90234 * 12 11 8 14 14 C 1.53000 * 109.47464 * 153.90315 * 12 11 8 15 15 C 1.50707 * 109.47255 * 273.90290 * 12 11 8 16 16 H 1.08000 * 119.99508 * 0.02562 * 15 12 11 17 17 C 1.37872 * 120.00133 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99965 * 179.97438 * 17 15 12 19 19 Si 1.86802 * 120.00041 * 359.97438 * 17 15 12 20 20 H 1.48504 * 109.47154 * 90.00097 * 19 17 15 21 21 H 1.48498 * 109.47241 * 209.99935 * 19 17 15 22 22 H 1.48501 * 109.47187 * 330.00161 * 19 17 15 23 23 C 1.35167 * 108.78238 * 0.38389 * 7 6 5 24 24 C 1.36639 * 125.99579 * 180.02562 * 5 3 2 25 25 C 1.50701 * 126.64758 * 0.03543 * 24 5 3 26 26 H 1.09001 * 109.47039 * 299.99698 * 1 2 3 27 27 H 1.09004 * 109.47494 * 59.99900 * 1 2 3 28 28 H 1.08996 * 109.47247 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47413 * 64.74715 * 10 8 7 30 30 H 1.09008 * 109.47299 * 184.74564 * 10 8 7 31 31 H 1.09002 * 109.47470 * 304.74056 * 10 8 7 32 32 H 1.00900 * 110.99652 * 277.06661 * 11 8 7 33 33 H 1.08996 * 109.47391 * 176.93467 * 14 12 11 34 34 H 1.09000 * 109.47005 * 296.93352 * 14 12 11 35 35 H 1.09000 * 109.47298 * 56.93146 * 14 12 11 36 36 H 0.97003 * 120.00034 * 179.97438 * 18 17 15 37 37 H 1.08001 * 126.43786 * 179.89198 * 23 7 6 38 38 H 1.09000 * 109.47638 * 270.00263 * 25 24 5 39 39 H 1.08998 * 109.46938 * 30.00327 * 25 24 5 40 40 H 1.08997 * 109.47178 * 150.00398 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2219 0.0005 5 6 3.5271 1.2786 -0.0006 6 8 4.3762 0.2300 -0.0016 7 6 5.6376 0.6795 -0.0074 8 6 6.8754 -0.1801 -0.0154 9 1 7.7233 0.4074 -0.3675 10 6 7.1565 -0.6827 1.4020 11 7 6.6693 -1.3270 -0.9099 12 6 7.9474 -1.8109 -1.4485 13 1 8.7293 -1.6819 -0.7001 14 6 7.8221 -3.2935 -1.8049 15 6 8.3011 -1.0252 -2.6850 16 1 7.6425 -0.2442 -3.0353 17 6 9.4659 -1.3027 -3.3684 18 7 9.7743 -0.6174 -4.4476 19 14 10.6062 -2.6521 -2.7613 20 1 10.2237 -3.9427 -3.3885 21 1 12.0062 -2.3193 -3.1278 22 1 10.4950 -2.7671 -1.2849 23 6 5.6179 2.0310 -0.0016 24 6 4.2712 2.4246 -0.0001 25 6 3.7470 3.8375 0.0017 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 6.3471 -1.3389 1.7220 30 1 8.0968 -1.2340 1.4123 31 1 7.2260 0.1667 2.0816 32 1 6.1717 -2.0678 -0.4390 33 1 8.7528 -3.6390 -2.2549 34 1 7.6201 -3.8686 -0.9013 35 1 7.0041 -3.4293 -2.5124 36 1 10.5941 -0.8124 -4.9282 37 1 6.4774 2.6850 -0.0024 38 1 3.6195 4.1792 -1.0254 39 1 2.7867 3.8680 0.5166 40 1 4.4555 4.4872 0.5155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602867069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:32 Heat of formation + Delta-G solvation = -65.434060 kcal Electronic energy + Delta-G solvation = -22242.831035 eV Core-core repulsion = 18831.919208 eV Total energy + Delta-G solvation = -3410.911827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.56410 -40.15835 -37.02344 -36.60147 -33.95284 -33.40088 -31.52201 -29.79116 -28.46428 -27.51962 -26.96720 -25.14082 -23.93496 -21.68665 -21.09095 -20.28640 -19.24882 -18.13627 -16.98218 -16.73745 -16.66962 -15.82118 -15.41369 -15.07782 -14.46000 -14.20921 -13.60968 -13.51677 -13.32592 -13.05623 -13.01519 -12.77860 -12.68562 -12.53435 -12.34758 -12.27124 -12.15522 -11.76213 -11.26480 -11.04949 -10.92636 -10.72159 -10.61477 -10.50321 -10.36763 -9.61275 -9.48636 -9.31465 -8.59131 -8.34541 -7.58495 -6.07933 -4.06199 0.96940 2.38156 2.46112 2.94579 3.15941 3.22530 3.30697 3.35037 4.36087 4.52083 4.82814 4.85730 4.95858 5.03993 5.05510 5.20995 5.32264 5.35197 5.41598 5.54202 5.68874 5.70483 5.72321 5.92826 6.01771 6.03922 6.13367 6.19546 6.23481 6.31015 6.35387 6.45296 6.52394 6.69962 7.04576 7.12941 7.63010 7.67109 7.78626 8.09798 8.66898 9.04461 9.53947 11.05392 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022891 B = 0.004155 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.885577 B = 6737.826163 C = 7048.605942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.348 6.348 3 C 0.558 3.442 4 O -0.497 6.497 5 C -0.100 4.100 6 O -0.138 6.138 7 C 0.092 3.908 8 C 0.158 3.842 9 H 0.123 0.877 10 C -0.180 4.180 11 N -0.667 5.667 12 C 0.183 3.817 13 H 0.006 0.994 14 C -0.157 4.157 15 C -0.501 4.501 16 H 0.082 0.918 17 C 0.068 3.932 18 N -0.899 5.899 19 Si 0.884 3.116 20 H -0.279 1.279 21 H -0.297 1.297 22 H -0.269 1.269 23 C -0.237 4.237 24 C -0.061 4.061 25 C -0.096 4.096 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.328 0.672 33 H 0.048 0.952 34 H 0.027 0.973 35 H 0.062 0.938 36 H 0.264 0.736 37 H 0.159 0.841 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.136 2.385 12.556 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.264 6.264 3 C 0.404 3.596 4 O -0.388 6.388 5 C -0.150 4.150 6 O -0.032 6.032 7 C 0.037 3.963 8 C 0.047 3.953 9 H 0.141 0.859 10 C -0.239 4.239 11 N -0.297 5.297 12 C 0.075 3.925 13 H 0.023 0.977 14 C -0.214 4.214 15 C -0.539 4.539 16 H 0.100 0.900 17 C -0.134 4.134 18 N -0.537 5.537 19 Si 0.715 3.285 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.195 1.195 23 C -0.257 4.257 24 C -0.063 4.063 25 C -0.153 4.153 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.176 0.824 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.483 2.757 11.841 17.425 hybrid contribution 0.960 -1.104 0.800 1.668 sum -11.523 1.653 12.641 17.185 Atomic orbital electron populations 1.23302 0.75884 1.03886 1.02578 1.86700 1.23538 1.32042 1.84161 1.19188 0.85607 0.81866 0.72897 1.90875 1.64583 1.35746 1.47562 1.20244 0.87618 0.86224 1.20873 1.84111 1.15324 1.33893 1.69900 1.23314 0.83575 0.93762 0.95640 1.20295 0.89783 0.93326 0.91945 0.85934 1.22556 1.02507 1.01893 0.96921 1.60485 1.23722 1.09047 1.36412 1.19672 0.85465 0.91616 0.95728 0.97666 1.22317 1.01577 0.97847 0.99685 1.21014 1.06027 1.18883 1.07988 0.90044 1.24961 0.97471 0.96166 0.94769 1.69885 1.25074 1.40951 1.17786 0.86924 0.79704 0.82399 0.79475 1.20611 1.22454 1.19470 1.21433 0.96953 0.94423 1.12847 1.20557 0.92549 0.95441 0.97719 1.20459 1.01799 0.89915 1.03091 0.91820 0.91677 0.87897 0.92247 0.91219 0.91908 0.85480 0.93388 0.95353 0.91925 0.92648 0.82365 0.90482 0.89948 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.35 -4.89 10.58 -42.48 -0.45 -5.34 16 3 C 0.56 8.64 7.93 34.05 0.27 8.91 16 4 O -0.50 -7.84 14.53 -19.36 -0.28 -8.12 16 5 C -0.10 -1.65 7.18 -36.85 -0.26 -1.91 16 6 O -0.14 -2.42 10.66 4.77 0.05 -2.37 16 7 C 0.09 1.55 6.16 -35.40 -0.22 1.33 16 8 C 0.16 2.67 2.84 -68.87 -0.20 2.47 16 9 H 0.12 2.24 7.65 -51.93 -0.40 1.84 16 10 C -0.18 -2.44 9.15 37.15 0.34 -2.10 16 11 N -0.67 -13.02 6.03 -102.17 -0.62 -13.64 16 12 C 0.18 4.08 2.01 -68.87 -0.14 3.94 16 13 H 0.01 0.13 6.35 -51.93 -0.33 -0.20 16 14 C -0.16 -3.25 8.66 37.16 0.32 -2.93 16 15 C -0.50 -13.67 9.14 -34.44 -0.31 -13.98 16 16 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 17 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 18 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 19 Si 0.88 21.21 24.40 -169.99 -4.15 17.06 16 20 H -0.28 -6.57 6.84 56.52 0.39 -6.18 16 21 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.27 -6.10 6.53 56.52 0.37 -5.73 16 23 C -0.24 -3.65 10.72 -39.90 -0.43 -4.08 16 24 C -0.06 -0.92 6.20 -104.42 -0.65 -1.57 16 25 C -0.10 -1.19 9.81 36.01 0.35 -0.83 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 30 H 0.07 0.95 7.64 -51.92 -0.40 0.55 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.33 5.72 7.99 -39.29 -0.31 5.41 16 33 H 0.05 1.05 3.23 -51.93 -0.17 0.88 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.04 6.45 -51.93 -0.33 0.70 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -31.54 333.35 -5.36 -36.90 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.77 Total: 4.30 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 0.05 Total: -7.53 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.16 Total: -39.93 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.68 Total: -15.83 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.15 Total: 17.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.54 -5.36 -36.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.531 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds