Wall clock time and date at job start Tue Mar 31 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34899 * 116.99738 * 2 1 4 4 O 1.21624 * 120.00278 * 0.02562 * 3 2 1 5 5 C 1.46472 * 119.99881 * 180.02562 * 3 2 1 6 6 O 1.34935 * 125.99503 * 359.97085 * 5 3 2 7 7 C 1.33913 * 109.37832 * 180.02562 * 6 5 3 8 8 C 1.50702 * 125.60784 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47092 * 200.02883 * 8 7 6 10 10 C 1.52988 * 109.47332 * 80.02682 * 8 7 6 11 11 N 1.46907 * 109.47007 * 320.02416 * 8 7 6 12 12 C 1.46905 * 110.99733 * 206.09682 * 11 8 7 13 13 H 1.09006 * 109.46815 * 326.10296 * 12 11 8 14 14 C 1.52996 * 109.46444 * 206.10521 * 12 11 8 15 15 C 1.50698 * 109.47107 * 86.10396 * 12 11 8 16 16 H 1.08000 * 120.00144 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99856 * 179.97438 * 15 12 11 18 18 N 1.31508 * 119.99870 * 180.02562 * 17 15 12 19 19 Si 1.86804 * 119.99842 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.47083 * 269.99875 * 19 17 15 21 21 H 1.48502 * 109.46843 * 30.00158 * 19 17 15 22 22 H 1.48506 * 109.46852 * 149.99873 * 19 17 15 23 23 C 1.35167 * 108.78333 * 0.26792 * 7 6 5 24 24 C 1.36645 * 125.99527 * 180.02562 * 5 3 2 25 25 C 1.50701 * 126.64737 * 359.97438 * 24 5 3 26 26 H 1.08999 * 109.46823 * 299.99510 * 1 2 3 27 27 H 1.08991 * 109.47657 * 60.00181 * 1 2 3 28 28 H 1.09004 * 109.46705 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47417 * 175.02954 * 10 8 7 30 30 H 1.09002 * 109.47265 * 295.03097 * 10 8 7 31 31 H 1.09003 * 109.47330 * 55.02570 * 10 8 7 32 32 H 1.00897 * 110.99929 * 330.04434 * 11 8 7 33 33 H 1.09010 * 109.46869 * 173.91707 * 14 12 11 34 34 H 1.09001 * 109.47459 * 293.91550 * 14 12 11 35 35 H 1.09000 * 109.47468 * 53.92291 * 14 12 11 36 36 H 0.97007 * 119.99545 * 179.97438 * 18 17 15 37 37 H 1.08001 * 126.43872 * 179.69908 * 23 7 6 38 38 H 1.09007 * 109.46769 * 90.00615 * 25 24 5 39 39 H 1.09001 * 109.46895 * 210.00254 * 25 24 5 40 40 H 1.09000 * 109.47084 * 330.00425 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2220 0.0005 5 6 3.5271 1.2787 -0.0006 6 8 4.3762 0.2300 -0.0006 7 6 5.6376 0.6796 -0.0006 8 6 6.8755 -0.1799 -0.0012 9 1 7.7246 0.4058 0.3509 10 6 7.1517 -0.6754 -1.4220 11 7 6.6725 -1.3314 0.8883 12 6 7.9541 -1.8296 1.4053 13 1 8.7263 -1.7017 0.6465 14 6 7.8214 -3.3136 1.7530 15 6 8.3319 -1.0556 2.6419 16 1 7.6845 -0.2723 3.0075 17 6 9.5036 -1.3482 3.3072 18 7 9.8330 -0.6732 4.3866 19 14 10.6230 -2.7036 2.6752 20 1 10.2376 -3.9950 3.2989 21 1 10.4904 -2.8073 1.1997 22 1 12.0310 -2.3858 3.0245 23 6 5.6179 2.0311 0.0053 24 6 4.2712 2.4248 -0.0001 25 6 3.7469 3.8376 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 8.0939 -1.2232 -1.4391 30 1 6.3432 -1.3332 -1.7410 31 1 7.2147 0.1771 -2.0983 32 1 6.0440 -1.0992 1.6427 33 1 8.7974 -3.7096 2.0338 34 1 7.1283 -3.4310 2.5860 35 1 7.4442 -3.8574 0.8869 36 1 10.6572 -0.8793 4.8549 37 1 6.4773 2.6852 0.0114 38 1 3.6207 4.1779 1.0284 39 1 4.4549 4.4881 -0.5132 40 1 2.7860 3.8688 -0.5132 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602867071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:35 Heat of formation + Delta-G solvation = -69.038556 kcal Electronic energy + Delta-G solvation = -22252.587206 eV Core-core repulsion = 18841.519076 eV Total energy + Delta-G solvation = -3411.068130 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.68235 -40.21449 -36.86804 -36.63626 -34.04461 -33.38242 -31.51365 -29.75449 -28.50815 -27.77264 -27.01162 -24.99370 -23.85960 -21.72898 -21.08770 -20.11222 -19.24105 -18.20565 -17.11033 -16.99381 -16.80119 -15.78187 -15.59047 -15.06048 -14.44352 -14.25313 -13.55687 -13.43717 -13.15425 -13.10682 -13.04708 -12.82264 -12.63528 -12.39687 -12.25878 -12.15769 -12.01820 -11.92087 -11.22143 -11.07930 -10.96372 -10.83372 -10.68979 -10.61349 -10.07796 -9.60866 -9.57451 -9.31374 -8.66899 -8.45439 -7.59221 -6.18434 -4.20803 0.87355 2.31745 2.33843 2.86336 3.05845 3.22638 3.31619 3.34183 4.31687 4.50153 4.74647 4.78391 4.93295 5.01542 5.02416 5.16730 5.32788 5.38488 5.53994 5.63378 5.63758 5.67194 5.80890 5.94670 6.00599 6.06093 6.23424 6.23965 6.34853 6.41605 6.50047 6.53814 6.67878 6.90104 7.01588 7.19458 7.46649 7.60681 7.86591 8.21555 8.38688 8.82654 9.44096 10.94416 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023094 B = 0.004146 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.158914 B = 6751.910923 C = 7069.382415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.347 6.347 3 C 0.558 3.442 4 O -0.495 6.495 5 C -0.095 4.095 6 O -0.134 6.134 7 C 0.067 3.933 8 C 0.158 3.842 9 H 0.090 0.910 10 C -0.138 4.138 11 N -0.674 5.674 12 C 0.176 3.824 13 H 0.036 0.964 14 C -0.138 4.138 15 C -0.551 4.551 16 H 0.073 0.927 17 C 0.075 3.925 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.266 1.266 22 H -0.298 1.298 23 C -0.231 4.231 24 C -0.063 4.063 25 C -0.097 4.097 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.342 0.658 33 H 0.037 0.963 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.265 0.735 37 H 0.160 0.840 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.579 3.590 -11.123 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.263 6.263 3 C 0.404 3.596 4 O -0.386 6.386 5 C -0.145 4.145 6 O -0.029 6.029 7 C 0.013 3.987 8 C 0.048 3.952 9 H 0.108 0.892 10 C -0.196 4.196 11 N -0.305 5.305 12 C 0.067 3.933 13 H 0.054 0.946 14 C -0.196 4.196 15 C -0.590 4.590 16 H 0.091 0.909 17 C -0.128 4.128 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.205 1.205 21 H -0.191 1.191 22 H -0.225 1.225 23 C -0.250 4.250 24 C -0.065 4.065 25 C -0.153 4.153 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.178 0.822 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.821 3.123 -11.496 17.501 hybrid contribution 0.828 0.125 0.670 1.072 sum -11.993 3.248 -10.826 16.480 Atomic orbital electron populations 1.23317 0.75763 1.03982 1.02596 1.86708 1.23626 1.31893 1.84062 1.19171 0.85547 0.81941 0.72952 1.90883 1.64536 1.35751 1.47406 1.20321 0.87738 0.86186 1.20258 1.84162 1.15147 1.33745 1.69820 1.23420 0.83993 0.93900 0.97420 1.20323 0.88296 0.90600 0.96014 0.89230 1.21846 1.02763 1.00946 0.94031 1.60974 1.15479 1.30607 1.23483 1.19654 0.86745 0.92086 0.94825 0.94624 1.22024 0.99606 0.97876 1.00067 1.21708 1.07329 1.19799 1.10136 0.90914 1.24991 0.97479 0.95992 0.94372 1.69916 1.24464 1.40807 1.18081 0.86792 0.79061 0.82116 0.79816 1.20455 1.19101 1.22542 1.21508 0.97056 0.94452 1.11988 1.20589 0.92496 0.95548 0.97860 1.20469 1.01907 0.89809 1.03112 0.91668 0.91762 0.87808 0.91418 0.91795 0.92715 0.84023 0.94439 0.92944 0.94291 0.92541 0.82248 0.90464 0.91034 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.41 16 2 O -0.35 -4.77 10.58 -42.48 -0.45 -5.22 16 3 C 0.56 8.39 7.93 34.05 0.27 8.66 16 4 O -0.50 -7.60 14.53 -19.36 -0.28 -7.88 16 5 C -0.10 -1.52 7.18 -36.84 -0.26 -1.79 16 6 O -0.13 -2.31 10.66 4.74 0.05 -2.26 16 7 C 0.07 1.10 5.79 -35.40 -0.21 0.90 16 8 C 0.16 2.72 2.87 -68.87 -0.20 2.52 16 9 H 0.09 1.65 7.65 -51.93 -0.40 1.25 16 10 C -0.14 -2.04 9.37 37.15 0.35 -1.69 16 11 N -0.67 -13.32 6.04 -102.17 -0.62 -13.94 16 12 C 0.18 3.95 1.98 -68.86 -0.14 3.81 16 13 H 0.04 0.81 6.29 -51.93 -0.33 0.49 16 14 C -0.14 -2.96 8.91 37.16 0.33 -2.62 16 15 C -0.55 -14.70 8.90 -34.44 -0.31 -15.00 16 16 H 0.07 2.12 7.97 -52.49 -0.42 1.70 16 17 C 0.08 2.08 5.45 -17.82 -0.10 1.99 16 18 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 19 Si 0.89 21.31 24.31 -169.99 -4.13 17.17 16 20 H -0.28 -6.53 6.92 56.52 0.39 -6.14 16 21 H -0.27 -6.03 6.53 56.52 0.37 -5.66 16 22 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 23 C -0.23 -3.44 10.72 -39.90 -0.43 -3.87 16 24 C -0.06 -0.92 6.20 -104.42 -0.65 -1.57 16 25 C -0.10 -1.14 9.82 36.01 0.35 -0.79 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.01 7.58 -51.93 -0.39 0.61 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.34 7.08 8.00 -39.29 -0.31 6.77 16 33 H 0.04 0.82 3.46 -51.92 -0.18 0.64 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 38 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.02 6.45 -51.93 -0.33 0.68 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -30.35 333.37 -5.31 -35.67 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.77 Total: 5.34 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.16 Total: -39.80 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.68 Total: -15.36 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.13 Total: 17.17 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.35 -5.31 -35.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602867071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.370 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds