Wall clock time and date at job start Tue Mar 31 2020 05:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99997 * 2 1 4 4 H 1.48499 * 109.46800 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47057 * 299.99854 * 3 2 1 6 6 H 1.48502 * 109.47130 * 59.99876 * 3 2 1 7 7 C 1.37876 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99779 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47047 * 185.01192 * 9 7 2 11 11 C 1.46957 * 110.99814 * 295.17584 * 10 9 7 12 12 C 1.53047 * 109.36659 * 183.19176 * 11 10 9 13 13 N 1.46954 * 109.36426 * 301.59840 * 12 11 10 14 14 C 1.46901 * 111.00139 * 183.18795 * 13 12 11 15 15 C 1.53003 * 109.46868 * 170.00264 * 14 13 12 16 16 C 1.50703 * 109.46808 * 180.02562 * 15 14 13 17 17 C 1.33646 * 126.03822 * 89.71498 * 16 15 14 18 18 N 1.31781 * 114.49747 * 179.79040 * 17 16 15 19 19 C 1.29023 * 117.12524 * 0.51454 * 18 17 16 20 20 S 1.70979 * 110.16803 * 359.71917 * 19 18 17 21 21 C 1.46957 * 110.87913 * 59.31890 * 13 12 11 22 22 C 1.46954 * 111.00459 * 58.97570 * 10 9 7 23 23 H 0.97004 * 119.99880 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47046 * 65.00664 * 9 7 2 25 25 H 1.09003 * 109.46791 * 305.00992 * 9 7 2 26 26 H 1.09002 * 109.49002 * 63.22179 * 11 10 9 27 27 H 1.09002 * 109.48813 * 303.15892 * 11 10 9 28 28 H 1.08997 * 109.49091 * 181.63109 * 12 11 10 29 29 H 1.09004 * 109.49321 * 61.56490 * 12 11 10 30 30 H 1.08999 * 109.46792 * 289.99553 * 14 13 12 31 31 H 1.09000 * 109.47111 * 50.00002 * 14 13 12 32 32 H 1.08999 * 109.46833 * 299.99263 * 15 14 13 33 33 H 1.09000 * 109.47469 * 59.99957 * 15 14 13 34 34 H 1.07997 * 122.74646 * 359.97399 * 17 16 15 35 35 H 1.08003 * 124.91805 * 179.75250 * 19 18 17 36 36 H 1.09002 * 109.49002 * 60.64970 * 21 13 12 37 37 H 1.09002 * 109.48813 * 180.71256 * 21 13 12 38 38 H 1.09004 * 109.48633 * 296.78402 * 22 10 9 39 39 H 1.08997 * 109.48815 * 56.84430 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2010 -3.6130 0.1221 11 6 3.0789 -3.6872 -1.0540 12 6 3.9975 -4.9045 -0.9257 13 7 4.7854 -4.7924 0.3097 14 6 5.7353 -5.9063 0.4312 15 6 6.7010 -5.6293 1.5853 16 6 7.6759 -6.7718 1.7095 17 6 8.8547 -6.8706 1.0876 18 7 9.5285 -7.9687 1.3650 19 6 8.9792 -8.8063 2.1782 20 16 7.4597 -8.2166 2.6945 21 6 3.9074 -4.7182 1.4859 22 6 2.9888 -3.5008 1.3575 23 1 -0.4850 0.8401 -0.0004 24 1 0.6937 -2.5969 -0.9311 25 1 0.5584 -2.5188 0.8420 26 1 3.6820 -2.7813 -1.1153 27 1 2.4726 -3.7824 -1.9549 28 1 4.6693 -4.9451 -1.7830 29 1 3.3954 -5.8126 -0.8918 30 1 5.1898 -6.8292 0.6276 31 1 6.2978 -6.0070 -0.4970 32 1 7.2466 -4.7064 1.3889 33 1 6.1385 -5.5286 2.5135 34 1 9.2260 -6.1114 0.4153 35 1 9.4162 -9.7440 2.4884 36 1 3.3043 -5.6241 1.5472 37 1 4.5137 -4.6230 2.3867 38 1 3.5909 -2.5928 1.3237 39 1 2.3170 -3.4602 2.2149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603017802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:18 Heat of formation + Delta-G solvation = 53.934934 kcal Electronic energy + Delta-G solvation = -19527.759947 eV Core-core repulsion = 16597.069970 eV Total energy + Delta-G solvation = -2930.689977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.88834 -38.79799 -35.75620 -33.26119 -32.11713 -30.37055 -29.01989 -27.19501 -25.49587 -24.37526 -23.10437 -22.16731 -21.22857 -20.23610 -19.10164 -18.25065 -16.47649 -16.04082 -15.58333 -15.00932 -14.78758 -14.50143 -14.20263 -14.17808 -14.07868 -13.81886 -13.38681 -12.98916 -12.51393 -12.22558 -11.89713 -11.82931 -11.72043 -11.09705 -11.03292 -10.83276 -10.64306 -10.50862 -10.35456 -10.06543 -9.89402 -9.81729 -9.56452 -9.45262 -9.14594 -8.43500 -8.12981 -7.17290 -6.02559 -4.11485 0.45813 1.10679 1.50574 2.60014 3.26841 3.35158 3.39440 3.97170 4.14854 4.41260 4.79617 4.82423 4.98158 5.01635 5.07835 5.27949 5.28516 5.41988 5.48659 5.61768 5.74685 5.84994 5.88482 5.91962 5.94771 5.99150 6.13925 6.30378 6.60251 6.76874 6.86158 7.19512 7.26333 7.36865 7.44213 7.52769 7.90352 8.05183 8.28293 8.30122 8.99567 9.55576 11.02533 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.033697 B = 0.003161 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.739086 B = 8856.673472 C = 9120.416329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.187 3.813 10 N -0.545 5.545 11 C 0.063 3.937 12 C 0.061 3.939 13 N -0.537 5.537 14 C 0.063 3.937 15 C -0.043 4.043 16 C -0.201 4.201 17 C 0.027 3.973 18 N -0.470 5.470 19 C 0.008 3.992 20 S 0.117 5.883 21 C 0.055 3.945 22 C 0.065 3.935 23 H 0.261 0.739 24 H 0.027 0.973 25 H 0.034 0.966 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.176 0.824 35 H 0.197 0.803 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.363 -16.137 4.286 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.061 3.939 10 N -0.269 5.269 11 C -0.066 4.066 12 C -0.067 4.067 13 N -0.262 5.262 14 C -0.066 4.066 15 C -0.083 4.083 16 C -0.323 4.323 17 C -0.124 4.124 18 N -0.183 5.183 19 C -0.289 4.289 20 S 0.369 5.631 21 C -0.073 4.073 22 C -0.064 4.064 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.193 0.807 35 H 0.213 0.787 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.981 -16.570 4.729 22.190 hybrid contribution 0.793 1.572 -0.553 1.845 sum 14.774 -14.998 4.176 21.463 Atomic orbital electron populations 1.69956 1.06041 1.26701 1.50392 1.24970 0.94749 0.99180 0.94947 0.86592 0.80223 0.83922 0.77621 1.19756 1.20989 1.20981 1.21809 0.93492 0.92002 1.51342 0.92215 1.19736 0.90865 0.85561 0.97729 1.62687 1.17004 1.46321 1.00885 1.21932 0.94167 0.95971 0.94488 1.22212 0.94871 0.98487 0.91147 1.62111 1.18454 1.42266 1.03328 1.22049 0.94049 0.92366 0.98149 1.20120 0.94534 0.93787 0.99840 1.26086 1.01272 1.01240 1.03685 1.21810 0.91693 0.96502 1.02381 1.66316 1.34492 1.03047 1.14449 1.28337 0.96360 1.04003 1.00221 1.84149 1.20707 1.13650 1.44593 1.22312 0.93897 0.98776 0.92297 1.21909 0.94858 0.95706 0.93901 0.92895 0.95515 0.94787 0.93405 0.91385 0.91276 0.94755 0.95003 0.90739 0.88552 0.90188 0.80653 0.78651 0.94782 0.91219 0.93169 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.55 -14.95 7.66 -34.44 -0.26 -15.22 16 8 H 0.06 1.64 5.82 -52.49 -0.31 1.33 16 9 C 0.19 4.79 5.14 -4.98 -0.03 4.76 16 10 N -0.54 -11.64 4.92 -235.91 -1.16 -12.80 16 11 C 0.06 1.22 5.32 -3.77 -0.02 1.20 16 12 C 0.06 0.94 5.61 -3.77 -0.02 0.92 16 13 N -0.54 -7.88 4.71 -234.47 -1.10 -8.99 16 14 C 0.06 0.73 4.94 -3.82 -0.02 0.71 16 15 C -0.04 -0.43 5.68 -27.88 -0.16 -0.59 16 16 C -0.20 -1.97 5.85 -35.92 -0.21 -2.18 16 17 C 0.03 0.27 11.25 -19.18 -0.22 0.06 16 18 N -0.47 -5.14 10.54 -15.75 -0.17 -5.31 16 19 C 0.01 0.07 12.23 51.58 0.63 0.70 16 20 S 0.12 0.99 23.22 -107.50 -2.50 -1.51 16 21 C 0.06 0.85 5.41 -3.77 -0.02 0.82 16 22 C 0.07 1.26 5.24 -3.77 -0.02 1.24 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 25 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 1.02 6.78 -51.93 -0.35 0.67 16 27 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 28 H 0.07 0.94 8.07 -51.93 -0.42 0.53 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 31 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.81 6.49 -51.93 -0.34 0.48 16 34 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.20 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.93 6.34 -51.93 -0.33 0.60 16 38 H 0.05 1.08 6.62 -51.93 -0.34 0.74 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 324.96 15.07 4.90 4.90 Total: -1.00 -30.22 324.96 -10.62 -40.84 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.86 Total: -2.19 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.44 Total: -5.88 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -1.69 Total: -52.54 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.50 Total: -1.51 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.22 -10.62 -40.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603017802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.775 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds