Wall clock time and date at job start Tue Mar 31 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29025 * 124.91536 * 2 1 4 4 C 1.31778 * 117.12564 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.75069 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47155 * 275.02593 * 5 4 3 7 7 C 1.46904 * 110.99957 * 180.02562 * 6 5 4 8 8 C 1.53041 * 109.45784 * 205.00089 * 7 6 5 9 9 C 1.53192 * 109.31335 * 178.61239 * 8 7 6 10 10 N 1.46923 * 108.89264 * 54.56274 * 9 8 7 11 11 C 1.36934 * 120.63052 * 126.47035 * 10 9 8 12 12 H 1.07997 * 119.99978 * 331.92274 * 11 10 9 13 13 C 1.38810 * 120.00385 * 151.92570 * 11 10 9 14 14 N 1.31626 * 119.99638 * 343.17619 * 13 11 10 15 15 Si 1.86793 * 120.00463 * 163.17439 * 13 11 10 16 16 H 1.48508 * 109.46924 * 60.00059 * 15 13 11 17 17 H 1.48497 * 109.47413 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47362 * 300.00284 * 15 13 11 19 19 C 1.46963 * 118.71481 * 306.64195 * 10 9 8 20 20 C 1.53034 * 109.46373 * 84.93133 * 7 6 5 21 21 C 1.33639 * 114.50175 * 0.23844 * 4 3 2 22 22 S 1.70981 * 124.91628 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.46705 * 89.99674 * 1 2 3 24 24 H 1.08999 * 109.46604 * 209.99191 * 1 2 3 25 25 H 1.08995 * 109.47227 * 329.99564 * 1 2 3 26 26 H 1.09000 * 109.47062 * 155.02704 * 5 4 3 27 27 H 1.09000 * 109.47098 * 35.03039 * 5 4 3 28 28 H 1.00899 * 111.00010 * 56.04715 * 6 5 4 29 29 H 1.08998 * 109.44611 * 324.96047 * 7 6 5 30 30 H 1.09005 * 109.50147 * 58.66032 * 8 7 6 31 31 H 1.08997 * 109.50434 * 298.56475 * 8 7 6 32 32 H 1.09000 * 109.59176 * 174.42588 * 9 8 7 33 33 H 1.09002 * 109.58672 * 294.70754 * 9 8 7 34 34 H 0.97000 * 119.99586 * 180.02562 * 14 13 11 35 35 H 1.08993 * 109.46933 * 293.56921 * 19 10 9 36 36 H 1.09000 * 109.71279 * 173.28325 * 19 10 9 37 37 H 1.09000 * 109.49720 * 301.33770 * 20 7 6 38 38 H 1.09010 * 109.49370 * 61.40059 * 20 7 6 39 39 H 1.08002 * 126.04512 * 179.76890 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 7 4.7572 2.4746 -1.3798 7 6 5.7096 3.5924 -1.4194 8 6 5.4691 4.4226 -2.6824 9 6 6.4407 5.6068 -2.7029 10 7 7.8126 5.0990 -2.5669 11 6 8.7768 5.4416 -3.4769 12 1 8.4998 5.6797 -4.4933 13 6 10.1101 5.4829 -3.0931 14 7 10.4264 5.5234 -1.8161 15 14 11.4556 5.4811 -4.3889 16 1 11.2983 6.6680 -5.2675 17 1 12.7828 5.5301 -3.7245 18 1 11.3553 4.2445 -5.2048 19 6 8.1290 4.2133 -1.4376 20 6 7.1385 3.0447 -1.4313 21 6 3.9355 -0.4005 -0.0041 22 16 2.4857 -1.4020 -0.0006 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3632 -0.8901 0.5137 25 1 -0.3633 0.8899 0.5139 26 1 5.4747 1.6955 0.4344 27 1 4.1272 2.8481 0.5892 28 1 3.8874 2.7243 -1.8261 29 1 5.5687 4.2205 -0.5398 30 1 4.4439 4.7931 -2.6846 31 1 5.6338 3.8017 -3.5629 32 1 6.3418 6.1444 -3.6459 33 1 6.2158 6.2784 -1.8743 34 1 11.3581 5.5526 -1.5479 35 1 8.0435 4.7698 -0.5044 36 1 9.1443 3.8311 -1.5434 37 1 7.3016 2.4344 -0.5431 38 1 7.2873 2.4361 -2.3234 39 1 4.9546 -0.7581 -0.0080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609335207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:08 Heat of formation + Delta-G solvation = 61.229084 kcal Electronic energy + Delta-G solvation = -19536.100969 eV Core-core repulsion = 16605.727290 eV Total energy + Delta-G solvation = -2930.373679 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.04743 -37.94125 -35.15284 -32.93946 -31.73575 -29.94486 -29.54584 -28.36120 -26.13596 -24.25141 -22.75517 -22.00973 -21.15040 -19.83265 -19.05459 -17.67877 -16.68840 -15.85014 -15.37710 -14.94599 -14.61100 -14.34191 -14.10641 -13.71474 -13.61191 -13.41917 -13.05916 -12.76561 -12.49073 -12.39643 -12.13221 -12.02723 -11.51783 -11.27715 -10.96183 -10.83022 -10.67491 -10.21182 -10.17168 -9.87057 -9.80719 -9.53948 -9.52298 -9.49582 -8.86509 -8.44145 -8.12558 -6.62736 -5.74866 -3.16973 0.58346 1.21110 1.58006 2.63400 3.41398 3.46783 3.48631 3.87536 4.53301 4.54547 4.79447 5.03930 5.09164 5.15010 5.22121 5.38147 5.46666 5.48605 5.55931 5.65228 5.72658 5.82202 5.94848 6.07575 6.17800 6.37937 6.45169 6.62243 6.67588 6.79509 6.81910 7.03461 7.36899 7.43869 7.58757 7.66766 7.73064 7.83780 8.49759 9.25823 9.89293 10.46476 11.33936 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.039164 B = 0.003113 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.770226 B = 8992.893134 C = 9294.451928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.045 3.955 3 N -0.469 5.469 4 C 0.075 3.925 5 C 0.134 3.866 6 N -0.682 5.682 7 C 0.097 3.903 8 C -0.132 4.132 9 C 0.149 3.851 10 N -0.592 5.592 11 C -0.251 4.251 12 H 0.064 0.936 13 C 0.002 3.998 14 N -0.904 5.904 15 Si 0.903 3.097 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.284 1.284 19 C 0.171 3.829 20 C -0.124 4.124 21 C -0.235 4.235 22 S 0.103 5.897 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.338 0.662 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.016 0.984 34 H 0.254 0.746 35 H 0.015 0.985 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.842 -12.941 5.289 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.234 4.234 3 N -0.185 5.185 4 C -0.056 4.056 5 C 0.002 3.998 6 N -0.313 5.313 7 C -0.012 4.012 8 C -0.172 4.172 9 C 0.021 3.979 10 N -0.315 5.315 11 C -0.381 4.381 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.549 5.549 15 Si 0.733 3.267 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.210 1.210 19 C 0.045 3.955 20 C -0.164 4.164 21 C -0.375 4.375 22 S 0.357 5.643 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.156 0.844 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -17.643 -13.947 5.239 23.092 hybrid contribution 0.838 1.322 -0.250 1.585 sum -16.804 -12.625 4.989 21.602 Atomic orbital electron populations 1.20425 0.85286 1.04050 1.03869 1.26990 1.01664 0.90965 1.03768 1.66090 1.04738 1.31691 1.15971 1.20236 0.89647 0.94508 1.01227 1.20448 0.95315 0.92519 0.91506 1.60676 1.15886 1.39667 1.15110 1.21509 0.93027 0.89393 0.97279 1.22205 0.98521 0.98863 0.97635 1.20848 0.85719 0.92538 0.98747 1.44043 1.04906 1.52897 1.29610 1.19147 0.86660 1.41892 0.90416 0.91792 1.25041 0.98026 1.00800 0.95816 1.70029 1.17026 1.53837 1.13969 0.86364 0.81224 0.78122 0.81032 1.20922 1.21661 1.21019 1.20795 0.97495 0.88147 0.89103 1.22207 0.93917 0.99805 1.00508 1.26841 1.02988 0.95569 1.12094 1.83893 0.98393 1.13092 1.68950 0.89615 0.90228 0.89355 0.89313 0.93703 0.84426 0.94474 0.93458 0.91528 0.92685 0.96650 0.93634 0.96709 0.89422 0.93718 0.92100 0.80398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.46 36.01 0.38 -0.13 16 2 C 0.04 0.47 7.39 -13.45 -0.10 0.37 16 3 N -0.47 -6.20 10.53 -8.05 -0.08 -6.29 16 4 C 0.08 0.99 6.25 -84.23 -0.53 0.47 16 5 C 0.13 1.86 5.92 -4.98 -0.03 1.83 16 6 N -0.68 -10.52 6.30 -107.95 -0.68 -11.20 16 7 C 0.10 1.70 2.46 -67.67 -0.17 1.54 16 8 C -0.13 -2.40 5.36 -26.61 -0.14 -2.54 16 9 C 0.15 3.20 6.51 -3.71 -0.02 3.17 16 10 N -0.59 -15.17 3.00 -172.30 -0.52 -15.68 16 11 C -0.25 -7.03 9.58 -15.06 -0.14 -7.18 16 12 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 13 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 14 N -0.90 -26.58 11.20 55.49 0.62 -25.96 16 15 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 C 0.17 4.16 5.30 -3.69 -0.02 4.14 16 20 C -0.12 -2.48 5.59 -26.62 -0.15 -2.63 16 21 C -0.24 -2.71 11.12 29.12 0.32 -2.38 16 22 S 0.10 0.97 23.18 -107.50 -2.49 -1.52 16 23 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.09 1.19 7.37 -51.93 -0.38 0.81 16 27 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 28 H 0.34 5.10 8.32 -39.29 -0.33 4.77 16 29 H 0.04 0.68 7.80 -51.93 -0.40 0.27 16 30 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 37 H 0.04 0.81 7.42 -51.93 -0.39 0.43 16 38 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 39 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -30.80 328.29 -9.92 -40.72 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.00 Total: 1.43 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -0.69 Total: -3.39 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.66 Total: -59.13 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.80 -9.92 -40.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.947 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds