Wall clock time and date at job start Tue Mar 31 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33643 * 122.75019 * 2 1 4 4 S 1.76198 * 107.92171 * 179.80249 * 3 2 1 5 5 C 1.70971 * 90.28619 * 0.28187 * 4 3 2 6 6 C 1.50699 * 124.91845 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.46767 * 269.69526 * 6 5 4 8 8 C 1.46954 * 110.99966 * 66.20188 * 7 6 5 9 9 C 1.53057 * 109.36263 * 183.18687 * 8 7 6 10 10 N 1.46956 * 109.36162 * 301.59585 * 9 8 7 11 11 C 1.46899 * 110.99677 * 183.18894 * 10 9 8 12 12 C 1.50698 * 109.47292 * 170.00200 * 11 10 9 13 13 H 1.07998 * 119.99743 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00183 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00150 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99908 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46863 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47096 * 119.99970 * 16 14 12 19 19 H 1.48500 * 109.46942 * 239.99556 * 16 14 12 20 20 C 1.46954 * 110.88042 * 59.32472 * 10 9 8 21 21 C 1.46956 * 110.99532 * 189.99783 * 7 6 5 22 22 N 1.29033 * 110.16479 * 359.71430 * 5 4 3 23 23 H 1.09000 * 109.47342 * 269.98064 * 1 2 3 24 24 H 1.09002 * 109.46921 * 29.97774 * 1 2 3 25 25 H 1.09001 * 109.47288 * 149.97408 * 1 2 3 26 26 H 1.07996 * 126.03873 * 0.02562 * 3 2 1 27 27 H 1.08997 * 109.47356 * 149.69917 * 6 5 4 28 28 H 1.09003 * 109.47008 * 29.69248 * 6 5 4 29 29 H 1.08997 * 109.49355 * 63.21813 * 8 7 6 30 30 H 1.09004 * 109.48943 * 303.15264 * 8 7 6 31 31 H 1.09002 * 109.48707 * 181.63135 * 9 8 7 32 32 H 1.09002 * 109.48655 * 61.56567 * 9 8 7 33 33 H 1.09003 * 109.47063 * 289.99903 * 11 10 9 34 34 H 1.09002 * 109.47208 * 50.00081 * 11 10 9 35 35 H 0.96999 * 120.00715 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.49355 * 60.64341 * 20 10 9 37 37 H 1.09004 * 109.48943 * 180.70890 * 20 10 9 38 38 H 1.09002 * 109.48908 * 56.84799 * 21 7 6 39 39 H 1.09002 * 109.49369 * 296.77670 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9332 0.6731 0.0058 5 6 3.5040 -0.9819 -0.0008 6 6 4.4835 -2.1271 -0.0006 7 7 4.8013 -2.4998 -1.3856 8 6 5.5298 -1.4210 -2.0673 9 6 5.7715 -1.8149 -3.5265 10 7 6.5325 -3.0713 -3.5722 11 6 6.8503 -3.4440 -4.9572 12 6 7.8298 -4.5892 -4.9571 13 1 8.1814 -4.9989 -4.0217 14 6 8.2779 -5.1133 -6.1510 15 7 7.8501 -4.6141 -7.2900 16 14 9.4915 -6.5334 -6.1508 17 1 9.8133 -6.9092 -4.7506 18 1 8.8915 -7.6974 -6.8509 19 1 10.7349 -6.1219 -6.8507 20 6 5.8040 -4.1501 -2.8905 21 6 5.5623 -3.7561 -1.4314 22 7 2.2199 -1.1083 -0.0005 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 1.8392 2.1308 0.0004 27 1 4.0435 -2.9815 0.5137 28 1 5.3962 -1.8245 0.5128 29 1 6.4867 -1.2583 -1.5714 30 1 4.9406 -0.5046 -2.0309 31 1 6.3371 -1.0287 -4.0265 32 1 4.8142 -1.9510 -4.0297 33 1 5.9376 -3.7466 -5.4706 34 1 7.2903 -2.5896 -5.4715 35 1 8.1650 -4.9829 -8.1301 36 1 4.8471 -4.3128 -3.3865 37 1 6.3932 -5.0664 -2.9270 38 1 4.9967 -4.5424 -0.9313 39 1 6.5196 -3.6201 -0.9282 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609432086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:01 Heat of formation + Delta-G solvation = 57.131481 kcal Electronic energy + Delta-G solvation = -19646.838168 eV Core-core repulsion = 16716.286804 eV Total energy + Delta-G solvation = -2930.551364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.03529 -38.69490 -35.35711 -32.77126 -32.01567 -30.47660 -29.10120 -27.75572 -26.61295 -24.62425 -23.05586 -22.28282 -21.31713 -19.78464 -19.12479 -17.74619 -16.31711 -16.16683 -15.60786 -14.86172 -14.76374 -14.44112 -14.30960 -14.17010 -13.77896 -13.44950 -13.31810 -12.88015 -12.59220 -12.53312 -12.15374 -11.98348 -11.61339 -11.42932 -11.20077 -10.88850 -10.77511 -10.65221 -10.42201 -10.33683 -9.78869 -9.69030 -9.45979 -9.15311 -8.83844 -8.43867 -8.21608 -7.23136 -6.01977 -4.03459 0.56444 1.24333 1.62501 2.64983 3.31380 3.38739 3.43267 3.85570 4.12906 4.42882 4.76710 4.94336 4.96842 5.05996 5.09941 5.32521 5.34152 5.37219 5.38628 5.50117 5.53693 5.71243 5.74721 5.79627 5.87728 6.03139 6.09030 6.17043 6.42042 6.57751 6.68779 7.09133 7.11990 7.34221 7.37662 7.67735 7.80606 8.09273 8.20988 8.55348 9.04337 9.60829 11.08987 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.038583 B = 0.003312 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.543191 B = 8452.508957 C = 8529.417508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.067 3.933 3 C -0.269 4.269 4 S 0.115 5.885 5 C 0.072 3.928 6 C 0.128 3.872 7 N -0.531 5.531 8 C 0.053 3.947 9 C 0.059 3.941 10 N -0.538 5.538 11 C 0.193 3.807 12 C -0.506 4.506 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.067 3.933 21 C 0.061 3.939 22 N -0.459 5.459 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.174 0.826 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.030 0.970 33 H -0.008 1.008 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.030 0.970 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.755 10.675 16.563 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.408 4.408 4 S 0.370 5.630 5 C -0.207 4.207 6 C -0.003 4.003 7 N -0.257 5.257 8 C -0.075 4.075 9 C -0.070 4.070 10 N -0.264 5.264 11 C 0.068 3.932 12 C -0.545 4.545 13 H 0.082 0.918 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.061 4.061 21 C -0.067 4.067 22 N -0.174 5.174 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.192 0.808 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.010 0.990 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.986 10.668 16.374 21.946 hybrid contribution -0.299 -0.573 -0.264 0.698 sum -10.285 10.095 16.110 21.615 Atomic orbital electron populations 1.20351 0.87199 1.03432 1.02764 1.20349 0.98302 0.86541 1.01319 1.26798 0.95251 1.03880 1.14892 1.84061 1.07482 1.03579 1.67912 1.26924 0.93994 0.97623 1.02163 1.20622 0.94044 0.93939 0.91693 1.62109 1.46438 1.04466 1.12688 1.22346 0.95969 0.93414 0.95818 1.22027 0.96587 0.94484 0.93936 1.62301 1.41832 1.01591 1.20629 1.19709 0.95304 0.96484 0.81697 1.21187 1.25139 1.15699 0.92480 0.91836 1.24996 0.96807 0.97362 0.95491 1.69967 1.44470 1.42060 0.97298 0.86450 0.80891 0.82035 0.78089 1.19657 1.21116 1.21049 1.21997 0.96744 0.96030 0.91362 1.22278 0.95551 0.90056 0.98783 1.66089 1.04529 1.31320 1.15435 0.90768 0.90821 0.90450 0.80814 0.87828 0.92537 0.93910 0.91345 0.90892 0.95140 0.99027 0.95218 0.92981 0.95165 0.89268 0.90713 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.31 36.00 0.37 -0.29 16 2 C 0.07 0.78 6.74 -84.23 -0.57 0.21 16 3 C -0.27 -2.73 11.13 29.12 0.32 -2.40 16 4 S 0.11 1.23 21.61 -107.50 -2.32 -1.09 16 5 C 0.07 0.93 6.18 -13.45 -0.08 0.85 16 6 C 0.13 1.60 5.54 -4.97 -0.03 1.57 16 7 N -0.53 -8.10 4.70 -235.90 -1.11 -9.21 16 8 C 0.05 0.82 5.38 -3.77 -0.02 0.80 16 9 C 0.06 1.11 5.61 -3.76 -0.02 1.09 16 10 N -0.54 -11.78 4.70 -235.90 -1.11 -12.89 16 11 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16 12 C -0.51 -14.21 8.47 -34.44 -0.29 -14.50 16 13 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 16 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 21 C 0.06 0.95 5.61 -3.76 -0.02 0.93 16 22 N -0.46 -6.40 10.53 -8.06 -0.08 -6.48 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.10 1.21 8.03 -51.93 -0.42 0.79 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.99 5.87 -51.93 -0.31 0.68 16 31 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 34 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.85 6.79 -51.93 -0.35 1.50 16 38 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 327.82 15.07 4.94 4.94 Total: -1.00 -31.47 327.82 -10.51 -41.98 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -6.06 Total: -3.84 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.48 Total: -3.90 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -1.57 Total: -54.68 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.32 Total: -1.09 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.47 -10.51 -41.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609432086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.112 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds