Wall clock time and date at job start Tue Mar 31 2020 05:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31778 * 122.75073 * 2 1 4 4 C 1.29030 * 117.12900 * 180.02562 * 3 2 1 5 5 S 1.70982 * 110.16116 * 359.73067 * 4 3 2 6 6 C 1.33638 * 122.74835 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.03922 * 359.97438 * 6 2 1 8 8 N 1.46905 * 109.46874 * 90.00236 * 7 6 2 9 9 C 1.46903 * 110.99864 * 179.97438 * 8 7 6 10 10 C 1.53071 * 109.45056 * 84.78784 * 9 8 7 11 11 C 1.53201 * 109.29371 * 181.24459 * 10 9 8 12 12 N 1.46928 * 108.89275 * 305.57634 * 11 10 9 13 13 C 1.36934 * 120.63265 * 233.51651 * 12 11 10 14 14 H 1.07997 * 119.99862 * 151.82898 * 13 12 11 15 15 C 1.38806 * 120.00015 * 331.83027 * 13 12 11 16 16 N 1.31624 * 120.00191 * 343.08772 * 15 13 12 17 17 Si 1.86800 * 120.00146 * 163.08448 * 15 13 12 18 18 H 1.48503 * 109.47142 * 60.00161 * 17 15 13 19 19 H 1.48498 * 109.47084 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47267 * 300.00095 * 17 15 13 21 21 C 1.46932 * 118.73342 * 53.53882 * 12 11 10 22 22 C 1.53045 * 109.45993 * 205.00011 * 9 8 7 23 23 H 1.08998 * 109.47022 * 269.99563 * 1 2 3 24 24 H 1.09001 * 109.47432 * 29.99582 * 1 2 3 25 25 H 1.08997 * 109.47673 * 149.99832 * 1 2 3 26 26 H 1.07998 * 124.91961 * 180.02562 * 4 3 2 27 27 H 1.08993 * 109.47436 * 330.00426 * 7 6 2 28 28 H 1.08999 * 109.47275 * 209.99524 * 7 6 2 29 29 H 1.00901 * 111.00191 * 56.04849 * 8 7 6 30 30 H 1.09001 * 109.45726 * 324.97224 * 9 8 7 31 31 H 1.09002 * 109.39343 * 61.36701 * 10 9 8 32 32 H 1.09003 * 109.62467 * 301.25928 * 10 9 8 33 33 H 1.09000 * 109.58250 * 185.72113 * 11 10 9 34 34 H 1.08995 * 109.58477 * 65.43833 * 11 10 9 35 35 H 0.96995 * 120.00379 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.59017 * 66.18099 * 21 12 11 37 37 H 1.09009 * 109.58200 * 186.46074 * 21 12 11 38 38 H 1.09002 * 109.49555 * 58.66314 * 22 9 8 39 39 H 1.08999 * 109.49562 * 298.56817 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 -0.0005 5 16 3.9332 -0.6731 0.0065 6 6 2.2299 -1.1240 -0.0005 7 6 1.6846 -2.5288 -0.0006 8 7 1.5070 -2.9850 -1.3857 9 6 0.9762 -4.3542 -1.4250 10 6 -0.5494 -4.3131 -1.3068 11 6 -1.0966 -5.7440 -1.3169 12 7 -0.5999 -6.4349 -2.5146 13 6 -1.4689 -7.0480 -3.3772 14 1 -1.2130 -7.1470 -4.4218 15 6 -2.6785 -7.5423 -2.9091 16 7 -2.8580 -7.7291 -1.6186 17 14 -4.0519 -7.9422 -4.1105 18 1 -3.5868 -8.9789 -5.0667 19 1 -5.2306 -8.4502 -3.3636 20 1 -4.4303 -6.7150 -4.8561 21 6 0.8471 -6.4558 -2.7689 22 6 1.3726 -5.0170 -2.7463 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 4.2059 1.8026 -0.0002 27 1 0.7237 -2.5457 0.5135 28 1 2.3830 -3.1897 0.5128 29 1 2.3711 -2.9176 -1.9022 30 1 1.3873 -4.9270 -0.5937 31 1 -0.9629 -3.7595 -2.1497 32 1 -0.8313 -3.8224 -0.3752 33 1 -2.1862 -5.7183 -1.3353 34 1 -0.7586 -6.2707 -0.4245 35 1 -3.7031 -8.0749 -1.2914 36 1 1.3458 -7.0392 -1.9950 37 1 1.0402 -6.9022 -3.7445 38 1 2.4587 -5.0249 -2.8379 39 1 0.9410 -4.4588 -3.5771 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610270946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:08 Heat of formation + Delta-G solvation = 61.720217 kcal Electronic energy + Delta-G solvation = -19818.946926 eV Core-core repulsion = 16888.594545 eV Total energy + Delta-G solvation = -2930.352382 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.00865 -38.09285 -35.41790 -32.91766 -31.57618 -30.05508 -29.68119 -27.85141 -25.40243 -24.58615 -23.46855 -22.15644 -21.22358 -19.25154 -18.87721 -18.16980 -16.74365 -16.13446 -15.31326 -14.90110 -14.56431 -14.26869 -14.13512 -13.75045 -13.50227 -13.43626 -13.08095 -12.63216 -12.58732 -12.26376 -12.12384 -11.97647 -11.42166 -11.24276 -11.01941 -10.85345 -10.69618 -10.26357 -10.21685 -9.91006 -9.81640 -9.63575 -9.55133 -9.38183 -8.82685 -8.47282 -8.22804 -6.66147 -5.77583 -3.19974 0.56595 1.21858 1.59770 2.67360 3.39877 3.45547 3.47247 4.09733 4.37436 4.51172 4.79372 4.96630 5.01896 5.31547 5.42325 5.44494 5.49267 5.60825 5.65227 5.69642 5.77737 5.87012 5.89496 6.11594 6.26217 6.32296 6.37939 6.55229 6.62924 6.74523 6.76873 6.98332 7.27320 7.39289 7.51586 7.59531 7.69009 7.81122 8.46938 9.23000 9.86286 10.43056 11.31073 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.034510 B = 0.003519 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.163882 B = 7954.651473 C = 8376.957541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.076 3.924 3 N -0.468 5.468 4 C 0.017 3.983 5 S 0.104 5.896 6 C -0.208 4.208 7 C 0.137 3.863 8 N -0.680 5.680 9 C 0.096 3.904 10 C -0.125 4.125 11 C 0.171 3.829 12 N -0.591 5.591 13 C -0.253 4.253 14 H 0.065 0.935 15 C 0.003 3.997 16 N -0.904 5.904 17 Si 0.903 3.097 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.283 1.283 21 C 0.148 3.852 22 C -0.132 4.132 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.197 0.803 27 H 0.095 0.905 28 H 0.040 0.960 29 H 0.335 0.665 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.015 0.985 35 H 0.254 0.746 36 H 0.015 0.985 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.611 14.003 4.742 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.056 4.056 3 N -0.182 5.182 4 C -0.282 4.282 5 S 0.357 5.643 6 C -0.329 4.329 7 C 0.005 3.995 8 N -0.312 5.312 9 C -0.012 4.012 10 C -0.165 4.165 11 C 0.044 3.956 12 N -0.314 5.314 13 C -0.383 4.383 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.210 1.210 21 C 0.021 3.979 22 C -0.172 4.172 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.214 0.786 27 H 0.114 0.886 28 H 0.058 0.942 29 H 0.152 0.848 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.033 0.967 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.586 14.237 4.767 19.591 hybrid contribution -0.589 -0.536 -0.258 0.837 sum 11.997 13.701 4.509 18.761 Atomic orbital electron populations 1.20419 0.86733 1.04180 1.02716 1.20262 0.98441 0.85859 1.01074 1.66198 1.04993 1.31824 1.15194 1.28228 0.95284 0.99752 1.04895 1.83993 1.07860 1.04087 1.68354 1.25710 0.94219 1.00841 1.12167 1.20302 1.00193 0.87271 0.91690 1.60708 1.33776 1.25490 1.11208 1.21534 0.96848 0.85633 0.97221 1.22219 0.93147 1.00749 1.00338 1.20794 1.00180 0.86611 0.87989 1.44045 0.99745 1.61136 1.26484 1.19145 0.98152 1.31235 0.89736 0.91772 1.25037 0.99970 0.98741 0.95831 1.70020 1.24650 1.48006 1.12124 0.86371 0.81787 0.78207 0.80407 1.20915 1.21644 1.20985 1.20852 0.86326 0.92080 0.98638 1.22207 0.98425 0.99525 0.97051 0.90961 0.90843 0.89350 0.78646 0.88645 0.94238 0.84757 0.94516 0.91999 0.93636 0.89372 0.96727 0.93604 0.96695 0.92638 0.93518 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 9.82 36.00 0.35 -0.57 16 2 C 0.08 0.96 6.74 -84.23 -0.57 0.39 16 3 N -0.47 -5.93 10.53 -11.90 -0.13 -6.05 16 4 C 0.02 0.16 12.23 51.59 0.63 0.79 16 5 S 0.10 1.00 23.22 -107.50 -2.50 -1.49 16 6 C -0.21 -2.48 6.10 -35.92 -0.22 -2.70 16 7 C 0.14 1.69 5.41 -4.97 -0.03 1.66 16 8 N -0.68 -9.45 6.30 -107.93 -0.68 -10.13 16 9 C 0.10 1.58 2.45 -67.65 -0.17 1.41 16 10 C -0.12 -2.36 5.60 -26.59 -0.15 -2.51 16 11 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 12 N -0.59 -14.77 3.00 -172.31 -0.52 -15.28 16 13 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 14 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 15 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 16 N -0.90 -26.16 11.20 55.49 0.62 -25.53 16 17 Si 0.90 21.69 29.59 -169.99 -5.03 16.67 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 22 C -0.13 -2.25 5.37 -26.61 -0.14 -2.40 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.09 1.07 7.35 -51.93 -0.38 0.69 16 26 H 0.20 1.21 8.06 -52.49 -0.42 0.79 16 27 H 0.10 1.20 6.69 -51.93 -0.35 0.86 16 28 H 0.04 0.47 8.05 -51.93 -0.42 0.05 16 29 H 0.33 4.36 8.32 -39.29 -0.33 4.03 16 30 H 0.04 0.62 7.80 -51.93 -0.40 0.22 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.04 0.78 7.42 -51.93 -0.39 0.40 16 33 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 1.13 7.93 -51.92 -0.41 0.72 16 38 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 326.01 15.07 4.91 4.91 Total: -1.00 -30.09 326.01 -9.79 -39.88 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.92 Total: 1.01 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.56 Total: -3.97 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.70 Total: -57.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.50 Total: -1.49 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.09 -9.79 -39.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.599 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds