Wall clock time and date at job start Tue Mar 31 2020 06:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47457 * 2 1 4 4 O 1.20765 * 119.99554 * 5.12488 * 3 2 1 5 5 C 1.50695 * 120.00322 * 185.11920 * 3 2 1 6 6 C 1.50694 * 115.55237 * 304.29619 * 5 3 2 7 7 O 1.21285 * 119.99885 * 113.78371 * 6 5 3 8 8 N 1.34772 * 120.00291 * 293.78840 * 6 5 3 9 9 C 1.47019 * 125.64750 * 4.93995 * 8 6 5 10 10 C 1.54328 * 107.27037 * 178.98730 * 9 8 6 11 11 C 1.55152 * 102.94407 * 337.81199 * 10 9 8 12 12 O 1.42899 * 111.00330 * 277.42869 * 11 10 9 13 13 C 1.50698 * 111.00624 * 153.60958 * 11 10 9 14 14 H 1.08004 * 119.99463 * 4.10144 * 13 11 10 15 15 C 1.37870 * 120.00213 * 184.09428 * 13 11 10 16 16 N 1.31525 * 119.99995 * 185.41010 * 15 13 11 17 17 Si 1.86802 * 120.00165 * 5.40740 * 15 13 11 18 18 H 1.48504 * 109.46749 * 84.78501 * 17 15 13 19 19 H 1.48494 * 109.47117 * 204.78175 * 17 15 13 20 20 H 1.48497 * 109.46879 * 324.78613 * 17 15 13 21 21 C 1.47429 * 125.64774 * 184.99962 * 8 6 5 22 22 C 1.53009 * 117.49577 * 89.96961 * 5 3 2 23 23 C 1.53002 * 117.49636 * 158.62783 * 5 3 2 24 24 H 1.09000 * 109.47381 * 60.00087 * 1 2 3 25 25 H 1.09004 * 109.47174 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47321 * 300.00130 * 1 2 3 27 27 H 1.09003 * 109.47321 * 239.99870 * 2 1 3 28 28 H 1.09000 * 109.47381 * 119.99913 * 2 1 3 29 29 H 1.09005 * 109.87710 * 59.57412 * 9 8 6 30 30 H 1.08999 * 109.88783 * 298.41072 * 9 8 6 31 31 H 1.08998 * 110.71841 * 219.44147 * 10 9 8 32 32 H 1.08998 * 110.86647 * 96.24505 * 10 9 8 33 33 H 0.96700 * 113.99503 * 298.54130 * 12 11 10 34 34 H 0.97002 * 119.99614 * 180.02562 * 16 15 13 35 35 H 1.09005 * 110.36310 * 85.24236 * 21 8 6 36 36 H 1.08996 * 110.36500 * 322.92036 * 21 8 6 37 37 H 1.08997 * 117.49626 * 214.99894 * 22 5 3 38 38 H 1.09000 * 117.49552 * 0.02562 * 22 5 3 39 39 H 1.09001 * 117.49899 * 359.97438 * 23 5 3 40 40 H 1.08998 * 117.50090 * 144.97959 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2515 2.3373 0.0934 5 6 3.5090 1.6979 -0.1164 6 6 4.3790 1.0314 0.9178 7 8 5.1703 0.1750 0.5839 8 7 4.2777 1.3867 2.2139 9 6 3.2962 2.3297 2.7697 10 6 3.5430 2.4042 4.2913 11 6 4.2798 1.0717 4.5895 12 8 3.3517 -0.0045 4.7386 13 6 5.1548 1.1997 5.8097 14 1 5.1507 2.1147 6.3835 15 6 5.9604 0.1487 6.1936 16 7 6.6429 0.2191 7.3157 17 14 6.0825 -1.3752 5.1202 18 1 7.1048 -1.1569 4.0654 19 1 6.4737 -2.5389 5.9554 20 1 4.7661 -1.6409 4.4863 21 6 5.1336 0.8951 3.3090 22 6 4.0872 1.8675 -1.5229 23 6 3.9311 3.0843 -0.6073 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2856 1.9703 2.5752 30 1 3.4340 3.3144 2.3231 31 1 2.5985 2.4524 4.8332 32 1 4.1733 3.2577 4.5410 33 1 2.7304 0.1105 5.4706 34 1 7.2099 -0.5202 7.5856 35 1 6.0443 1.4905 3.3752 36 1 5.3771 -0.1564 3.1574 37 1 5.0968 1.4969 -1.7000 38 1 3.3993 1.7790 -2.3638 39 1 3.1406 3.7957 -0.8463 40 1 4.8378 3.5143 -0.1819 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000649029129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:47 Heat of formation + Delta-G solvation = -84.961477 kcal Electronic energy + Delta-G solvation = -23456.241226 eV Core-core repulsion = 20044.482627 eV Total energy + Delta-G solvation = -3411.758599 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73767 -39.15434 -37.77418 -35.91257 -34.58442 -32.95399 -32.46932 -30.35952 -28.75211 -26.85890 -25.25761 -23.42664 -22.66990 -22.36086 -20.55654 -19.86976 -18.47135 -17.53483 -17.26240 -15.97872 -15.88056 -15.40502 -15.39142 -14.88787 -14.74210 -14.33605 -14.11198 -13.59433 -13.18519 -13.03711 -12.80487 -12.61523 -12.44277 -12.18323 -11.88736 -11.85563 -11.76255 -11.45328 -11.28088 -11.21375 -10.90174 -10.72360 -10.59466 -10.36333 -10.18730 -9.89001 -9.51359 -9.08406 -8.76655 -8.51618 -8.22614 -6.27595 -4.40577 1.68796 2.66717 3.09646 3.32784 3.42554 3.50005 3.61703 3.82861 4.38968 4.50818 4.61444 4.67018 4.80002 5.00259 5.03261 5.05597 5.11517 5.21279 5.37038 5.43362 5.50989 5.57744 5.67627 5.68369 5.72152 5.81415 5.90358 5.97052 6.03817 6.04572 6.37178 6.47456 6.57047 6.60358 6.97754 7.28136 7.41556 7.83827 8.13632 8.35186 8.67526 8.85139 9.35829 10.82286 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.005882 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.896575 B = 4759.387140 C = 4896.736792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.173 4.173 3 C 0.405 3.595 4 O -0.442 6.442 5 C -0.220 4.220 6 C 0.565 3.435 7 O -0.537 6.537 8 N -0.602 5.602 9 C 0.105 3.895 10 C -0.145 4.145 11 C 0.216 3.784 12 O -0.570 6.570 13 C -0.552 4.552 14 H 0.082 0.918 15 C 0.092 3.908 16 N -0.883 5.883 17 Si 0.865 3.135 18 H -0.280 1.280 19 H -0.296 1.296 20 H -0.227 1.227 21 C 0.110 3.890 22 C -0.124 4.124 23 C -0.138 4.138 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.365 0.635 34 H 0.268 0.732 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.293 3.374 -14.547 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.210 4.210 3 C 0.279 3.721 4 O -0.314 6.314 5 C -0.224 4.224 6 C 0.351 3.649 7 O -0.415 6.415 8 N -0.334 5.334 9 C -0.018 4.018 10 C -0.183 4.183 11 C 0.176 3.824 12 O -0.377 6.377 13 C -0.589 4.589 14 H 0.100 0.900 15 C -0.114 4.114 16 N -0.519 5.519 17 Si 0.692 3.308 18 H -0.206 1.206 19 H -0.223 1.223 20 H -0.150 1.150 21 C -0.011 4.011 22 C -0.161 4.161 23 C -0.175 4.175 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.212 0.788 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.845 3.082 -15.132 17.796 hybrid contribution 0.079 -0.622 0.161 0.647 sum -8.766 2.461 -14.971 17.522 Atomic orbital electron populations 1.21587 0.93346 1.02024 1.02878 1.22021 0.98268 0.95304 1.05402 1.23462 0.87309 0.91369 0.69921 1.90377 1.57753 1.48004 1.35247 1.22044 0.95911 1.04937 0.99488 1.18567 0.82955 0.82156 0.81195 1.90699 1.39021 1.31800 1.79972 1.48614 1.34331 1.44120 1.06327 1.22051 0.91679 0.92174 0.95880 1.23204 1.01530 1.01342 0.92261 1.20107 0.87206 0.82662 0.92474 1.86519 1.49024 1.46693 1.55429 1.21156 1.24930 1.03036 1.09791 0.90031 1.24962 0.93790 0.98334 0.94349 1.69923 1.27794 1.32794 1.21344 0.87219 0.80759 0.82327 0.80479 1.20628 1.22291 1.15047 1.22990 0.93738 1.00073 0.84317 1.23023 1.03118 1.00187 0.89775 1.23071 1.03660 0.89527 1.01236 0.92363 0.91843 0.91883 0.88189 0.87841 0.92342 0.91909 0.90658 0.89975 0.78811 0.92216 0.89764 0.90870 0.86764 0.87677 0.87027 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.22 37.15 0.34 -1.13 16 2 C -0.17 -2.06 6.17 -27.89 -0.17 -2.23 16 3 C 0.41 5.48 5.18 -29.04 -0.15 5.33 16 4 O -0.44 -6.51 16.10 5.99 0.10 -6.41 16 5 C -0.22 -3.07 1.66 -156.81 -0.26 -3.33 16 6 C 0.56 10.30 6.92 -10.99 -0.08 10.23 16 7 O -0.54 -11.49 16.95 5.55 0.09 -11.39 16 8 N -0.60 -11.44 3.33 -170.51 -0.57 -12.01 16 9 C 0.11 1.74 6.18 -3.06 -0.02 1.72 16 10 C -0.15 -2.58 6.13 -24.90 -0.15 -2.74 16 11 C 0.22 4.72 0.69 -89.63 -0.06 4.66 16 12 O -0.57 -12.29 10.50 -35.23 -0.37 -12.65 16 13 C -0.55 -14.34 8.86 -34.44 -0.31 -14.64 16 14 H 0.08 2.27 8.03 -52.48 -0.42 1.84 16 15 C 0.09 2.53 5.47 -17.82 -0.10 2.44 16 16 N -0.88 -25.85 13.96 55.43 0.77 -25.08 16 17 Si 0.86 21.76 23.98 -169.99 -4.08 17.68 16 18 H -0.28 -7.12 7.10 56.52 0.40 -6.71 16 19 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 20 H -0.23 -5.69 5.47 56.52 0.31 -5.38 16 21 C 0.11 2.43 4.87 -2.53 -0.01 2.42 16 22 C -0.12 -1.37 9.76 -26.68 -0.26 -1.63 16 23 C -0.14 -1.58 9.75 -26.69 -0.26 -1.84 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.06 0.94 7.25 -51.93 -0.38 0.57 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 33 H 0.36 6.66 9.11 45.56 0.41 7.07 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.08 1.89 8.03 -51.93 -0.42 1.47 16 36 H 0.07 1.79 4.77 -51.93 -0.25 1.54 16 37 H 0.11 1.31 8.01 -51.93 -0.42 0.90 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.11 1.17 7.83 -51.93 -0.41 0.77 16 40 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -31.93 327.88 -5.91 -37.84 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.31 Total: 7.83 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.49 Total: -0.75 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.21 Total: -37.08 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.18 Total: -30.46 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.08 Total: 17.68 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.93 -5.91 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649029129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.120 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds