Wall clock time and date at job start Tue Mar 31 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29028 * 124.91978 * 2 1 4 4 C 1.31774 * 117.13005 * 180.02562 * 3 2 1 5 5 C 1.33643 * 114.49986 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.03734 * 180.02562 * 5 4 3 7 7 N 1.46898 * 109.46916 * 89.99923 * 6 5 4 8 8 C 1.46904 * 110.99482 * 179.97438 * 7 6 5 9 9 C 1.53038 * 109.46487 * 275.06772 * 8 7 6 10 10 C 1.53187 * 109.31480 * 178.61615 * 9 8 7 11 11 N 1.46927 * 108.77616 * 54.63497 * 10 9 8 12 12 C 1.36934 * 120.62863 * 126.41323 * 11 10 9 13 13 H 1.08002 * 120.00497 * 331.82076 * 12 11 10 14 14 C 1.38812 * 120.00080 * 151.82532 * 12 11 10 15 15 N 1.31621 * 119.99476 * 343.07592 * 14 12 11 16 16 Si 1.86800 * 120.00421 * 163.07831 * 14 12 11 17 17 H 1.48501 * 109.46950 * 59.99908 * 16 14 12 18 18 H 1.48500 * 109.47256 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46794 * 300.00129 * 16 14 12 20 20 C 1.46925 * 118.73866 * 306.39006 * 11 10 9 21 21 C 1.53039 * 109.45905 * 154.99942 * 8 7 6 22 22 S 1.70978 * 124.91784 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47262 * 270.00491 * 1 2 3 24 24 H 1.09004 * 109.47292 * 30.00326 * 1 2 3 25 25 H 1.08996 * 109.47414 * 150.00473 * 1 2 3 26 26 H 1.08000 * 122.75568 * 180.26679 * 4 3 2 27 27 H 1.09008 * 109.46663 * 209.99831 * 6 5 4 28 28 H 1.09000 * 109.47137 * 329.99928 * 6 5 4 29 29 H 1.00896 * 110.99994 * 56.04850 * 7 6 5 30 30 H 1.09007 * 109.46237 * 35.02937 * 8 7 6 31 31 H 1.09008 * 109.49691 * 298.57077 * 9 8 7 32 32 H 1.08998 * 109.49569 * 58.66235 * 9 8 7 33 33 H 1.09006 * 109.58782 * 294.84735 * 10 9 8 34 34 H 1.09006 * 109.70517 * 174.49388 * 10 9 8 35 35 H 0.97010 * 119.99702 * 179.97438 * 15 14 12 36 36 H 1.08996 * 109.58723 * 293.82338 * 20 11 10 37 37 H 1.08999 * 109.70495 * 173.46086 * 20 11 10 38 38 H 1.09003 * 109.49902 * 301.33978 * 21 8 7 39 39 H 1.09003 * 109.50195 * 61.40193 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3575 -0.8994 -0.0004 7 7 5.8195 -1.0613 1.3846 8 6 7.2051 -1.5479 1.4237 9 6 7.2130 -3.0741 1.3102 10 6 8.6606 -3.5751 1.3166 11 7 9.3356 -3.0556 2.5138 12 6 9.9766 -3.9039 3.3767 13 1 9.6443 -4.9268 3.4750 14 6 11.0535 -3.4491 4.1252 15 7 11.6701 -2.3377 3.7831 16 14 11.6276 -4.4143 5.6180 17 1 12.0335 -5.7797 5.1984 18 1 12.7859 -3.7230 6.2390 19 1 10.5201 -4.5078 6.6028 20 6 9.3102 -1.6086 2.7671 21 6 7.8552 -1.1296 2.7445 22 16 2.4856 -1.4020 0.0006 23 1 -0.3634 0.0001 1.0277 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5137 26 1 4.2532 1.7000 0.0037 27 1 5.4057 -1.8596 -0.5142 28 1 5.9949 -0.1799 -0.5143 29 1 5.2066 -1.6744 1.9009 30 1 7.7642 -1.1192 0.5920 31 1 6.6752 -3.5045 2.1551 32 1 6.7289 -3.3722 0.3803 33 1 9.1746 -3.2189 0.4238 34 1 8.6722 -4.6650 1.3345 35 1 12.4225 -2.0197 4.3064 36 1 9.8770 -1.0920 1.9926 37 1 9.7488 -1.3985 3.7426 38 1 7.8283 -0.0437 2.8354 39 1 7.3112 -1.5778 3.5759 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730578246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:12 Heat of formation + Delta-G solvation = 59.699619 kcal Electronic energy + Delta-G solvation = -19443.269817 eV Core-core repulsion = 16512.829816 eV Total energy + Delta-G solvation = -2930.440001 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.83570 -38.16928 -35.43983 -33.02190 -31.78197 -30.33407 -29.67483 -28.13722 -25.28711 -24.22155 -23.23225 -22.09067 -21.36918 -19.79391 -19.04159 -18.12534 -16.85371 -15.66545 -15.36835 -14.90778 -14.57985 -14.49393 -14.07223 -13.82145 -13.57105 -13.46692 -13.02416 -12.87464 -12.76596 -12.53663 -12.22042 -11.99883 -11.50723 -11.29437 -11.05830 -10.79449 -10.71066 -10.27731 -10.24532 -10.02635 -9.79226 -9.73075 -9.56984 -9.38026 -8.89986 -8.48636 -8.14457 -6.67042 -5.78398 -3.21033 0.54312 1.16362 1.58863 2.70349 3.38677 3.44549 3.45835 3.98124 4.39317 4.50025 4.78679 4.83946 5.05314 5.12730 5.17994 5.28015 5.41358 5.48443 5.52951 5.57166 5.62298 5.74210 5.85140 6.05831 6.06951 6.28604 6.45184 6.55243 6.60412 6.68418 6.83274 6.92563 7.24151 7.36159 7.53450 7.59554 7.68821 7.79886 8.46024 9.22078 9.85328 10.42167 11.30164 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.042903 B = 0.003075 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.483003 B = 9102.332756 C = 9218.458930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.039 3.961 3 N -0.475 5.475 4 C 0.050 3.950 5 C -0.209 4.209 6 C 0.135 3.865 7 N -0.681 5.681 8 C 0.095 3.905 9 C -0.161 4.161 10 C 0.150 3.850 11 N -0.592 5.592 12 C -0.254 4.254 13 H 0.064 0.936 14 C 0.003 3.997 15 N -0.903 5.903 16 Si 0.903 3.097 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.171 3.829 21 C -0.125 4.125 22 S 0.111 5.889 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.177 0.823 27 H 0.042 0.958 28 H 0.093 0.907 29 H 0.338 0.662 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.016 0.984 34 H 0.052 0.948 35 H 0.254 0.746 36 H 0.017 0.983 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.286 3.340 -8.787 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.239 4.239 3 N -0.190 5.190 4 C -0.101 4.101 5 C -0.330 4.330 6 C 0.003 3.997 7 N -0.311 5.311 8 C -0.014 4.014 9 C -0.202 4.202 10 C 0.023 3.977 11 N -0.315 5.315 12 C -0.384 4.384 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.547 5.547 16 Si 0.732 3.268 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.045 3.955 21 C -0.164 4.164 22 S 0.365 5.635 23 H 0.103 0.897 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.194 0.806 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.156 0.844 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.423 3.534 -8.641 21.550 hybrid contribution 0.844 -0.666 0.513 1.192 sum -18.578 2.868 -8.128 20.480 Atomic orbital electron populations 1.20419 0.85367 1.04024 1.03845 1.26992 1.01696 0.91084 1.04120 1.66286 1.05076 1.31590 1.16017 1.21696 0.90753 0.96062 1.01600 1.25966 0.99458 0.96152 1.11401 1.20301 0.87725 0.99759 0.91892 1.60848 1.04217 1.55115 1.10966 1.21580 0.87048 0.92983 0.99747 1.22707 1.00632 0.96908 0.99915 1.20801 0.89710 0.97089 0.90130 1.44062 1.61632 1.03093 1.22711 1.19133 1.08232 0.94590 1.16431 0.91847 1.25046 0.95781 0.98053 1.00710 1.70025 1.21863 1.23736 1.39070 0.86369 0.77863 0.79344 0.83186 1.20918 1.21602 1.21017 1.20799 0.89792 0.83188 1.01733 1.22185 0.99497 0.99589 0.95168 1.84002 0.98223 1.12598 1.68673 0.89653 0.89386 0.90236 0.80646 0.93985 0.88922 0.84447 0.91058 0.92178 0.93676 0.96595 0.92919 0.93560 0.96492 0.89345 0.92637 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.46 36.00 0.38 -0.13 16 2 C 0.04 0.41 7.39 -13.46 -0.10 0.31 16 3 N -0.47 -5.98 10.54 -11.87 -0.13 -6.10 16 4 C 0.05 0.61 11.25 -19.19 -0.22 0.39 16 5 C -0.21 -2.43 6.11 -35.92 -0.22 -2.65 16 6 C 0.13 1.61 6.01 -4.98 -0.03 1.58 16 7 N -0.68 -9.58 6.24 -107.94 -0.67 -10.25 16 8 C 0.10 1.57 2.43 -67.67 -0.16 1.41 16 9 C -0.16 -2.72 5.33 -26.61 -0.14 -2.86 16 10 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 11 N -0.59 -14.81 2.99 -172.32 -0.52 -15.33 16 12 C -0.25 -7.00 9.58 -15.06 -0.14 -7.14 16 13 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 14 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 15 N -0.90 -26.26 11.19 55.49 0.62 -25.63 16 16 Si 0.90 21.73 29.59 -169.99 -5.03 16.71 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 21 C -0.12 -2.40 5.69 -26.61 -0.15 -2.55 16 22 S 0.11 1.13 23.18 -107.50 -2.49 -1.37 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.18 1.91 8.06 -52.49 -0.42 1.48 16 27 H 0.04 0.49 7.41 -51.92 -0.38 0.11 16 28 H 0.09 1.06 8.06 -51.93 -0.42 0.65 16 29 H 0.34 4.71 8.47 -39.29 -0.33 4.38 16 30 H 0.07 1.20 7.80 -51.93 -0.40 0.79 16 31 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.04 0.66 7.42 -51.93 -0.39 0.28 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 2.37 6.07 -51.93 -0.31 2.06 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 328.59 15.07 4.95 4.95 Total: -1.00 -30.19 328.59 -10.19 -40.38 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.01 Total: 1.17 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.92 Total: -4.52 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.69 Total: -57.32 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.49 Total: -1.37 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.19 -10.19 -40.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730578246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.080 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds