Wall clock time and date at job start Tue Mar 31 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33648 * 122.74750 * 2 1 4 4 S 1.76193 * 107.92072 * 180.02562 * 3 2 1 5 5 C 1.70977 * 90.28689 * 0.02562 * 4 3 2 6 6 C 1.50699 * 124.91517 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.46843 * 270.02352 * 6 5 4 8 8 C 1.46900 * 110.99874 * 180.02562 * 7 6 5 9 9 C 1.53045 * 109.46084 * 154.99800 * 8 7 6 10 10 C 1.53184 * 109.31045 * 181.38134 * 9 8 7 11 11 N 1.46928 * 108.89946 * 305.29664 * 10 9 8 12 12 C 1.36937 * 120.62751 * 233.68087 * 11 10 9 13 13 H 1.07999 * 120.00448 * 27.38666 * 12 11 10 14 14 C 1.38820 * 119.99269 * 207.39032 * 12 11 10 15 15 N 1.31613 * 120.00097 * 17.25596 * 14 12 11 16 16 Si 1.86807 * 119.99669 * 197.25602 * 14 12 11 17 17 H 1.48497 * 109.46957 * 60.00245 * 16 14 12 18 18 H 1.48494 * 109.47182 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47157 * 300.00224 * 16 14 12 20 20 C 1.47200 * 118.55359 * 53.53256 * 11 10 9 21 21 C 1.53036 * 109.45683 * 275.06510 * 8 7 6 22 22 N 1.29022 * 110.16208 * 0.24263 * 5 4 3 23 23 H 1.09003 * 109.47507 * 89.99831 * 1 2 3 24 24 H 1.09005 * 109.47111 * 210.00064 * 1 2 3 25 25 H 1.09000 * 109.47392 * 329.99540 * 1 2 3 26 26 H 1.07997 * 126.03404 * 0.03942 * 3 2 1 27 27 H 1.08998 * 109.47150 * 150.02572 * 6 5 4 28 28 H 1.08995 * 109.47113 * 30.01998 * 6 5 4 29 29 H 1.00905 * 111.00338 * 303.95387 * 7 6 5 30 30 H 1.08993 * 109.45159 * 35.03209 * 8 7 6 31 31 H 1.09004 * 109.49609 * 61.43429 * 9 8 7 32 32 H 1.09000 * 109.49498 * 301.33263 * 9 8 7 33 33 H 1.09005 * 109.58718 * 65.15681 * 10 9 8 34 34 H 1.09001 * 109.58894 * 185.43430 * 10 9 8 35 35 H 0.97008 * 119.99917 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.53557 * 186.67857 * 20 11 10 37 37 H 1.09002 * 109.67524 * 66.37760 * 20 11 10 38 38 H 1.09007 * 109.49849 * 298.56692 * 21 8 7 39 39 H 1.09005 * 109.50017 * 58.66433 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1241 0.0000 4 16 3.9332 0.6732 -0.0007 5 6 3.5040 -0.9818 -0.0018 6 6 4.4836 -2.1270 -0.0033 7 7 4.8013 -2.4976 -1.3889 8 6 5.7554 -3.6138 -1.4296 9 6 5.5999 -4.3695 -2.7514 10 6 6.5721 -5.5530 -2.7757 11 7 7.9320 -5.0571 -2.5238 12 6 8.9523 -5.3483 -3.3894 13 1 8.7394 -5.5370 -4.4312 14 6 10.2604 -5.4009 -2.9277 15 7 10.4991 -5.5117 -1.6381 16 14 11.6818 -5.3144 -4.1367 17 1 11.6171 -4.0340 -4.8860 18 1 12.9668 -5.3896 -3.3963 19 1 11.5915 -6.4502 -5.0890 20 6 8.1715 -4.2389 -1.3237 21 6 7.1813 -3.0700 -1.3157 22 7 2.2200 -1.1082 -0.0066 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 1.8391 2.1308 0.0006 27 1 4.0437 -2.9821 0.5097 28 1 5.3962 -1.8251 0.5104 29 1 3.9632 -2.7196 -1.9051 30 1 5.5575 -4.2910 -0.5988 31 1 5.8219 -3.6993 -3.5819 32 1 4.5776 -4.7364 -2.8425 33 1 6.2952 -6.2693 -2.0021 34 1 6.5346 -6.0368 -3.7517 35 1 11.4133 -5.5489 -1.3155 36 1 9.1911 -3.8540 -1.3425 37 1 8.0268 -4.8465 -0.4304 38 1 7.3884 -2.4120 -2.1597 39 1 7.2847 -2.5121 -0.3849 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735321275.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:11 Heat of formation + Delta-G solvation = 41.553023 kcal Electronic energy + Delta-G solvation = -19507.438252 eV Core-core repulsion = 16576.211356 eV Total energy + Delta-G solvation = -2931.226897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86014 -39.59129 -36.84593 -34.41147 -32.94869 -31.63677 -31.11464 -28.63456 -27.98760 -26.18409 -24.00806 -23.42764 -22.66874 -20.79570 -20.57121 -18.78478 -18.53649 -17.06830 -16.57447 -16.42029 -16.13594 -15.68081 -15.32827 -15.28017 -14.88184 -14.66695 -14.37392 -13.82914 -13.72495 -13.52541 -13.34475 -13.14056 -13.01798 -12.87589 -12.54974 -12.50525 -12.17043 -12.05799 -11.95011 -11.76720 -11.31675 -11.17102 -10.64710 -10.53210 -10.37202 -9.67670 -9.45991 -8.68806 -7.86659 -5.30864 -0.27716 0.45419 0.85906 1.47600 1.50495 1.57063 1.76849 2.52596 2.92829 3.26077 3.37082 3.70069 3.86801 3.98765 4.14748 4.28388 4.34214 4.39007 4.42571 4.52823 4.55991 4.72337 4.78867 4.85637 4.87023 4.95563 5.00770 5.03822 5.10411 5.20786 5.37881 5.39516 5.53911 5.65492 5.76205 5.98104 6.32876 6.40852 6.78681 7.15713 7.87008 8.39098 9.20164 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.037784 B = 0.003247 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.872123 B = 8622.148252 C = 8962.480674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.042 3.958 3 C -0.264 4.264 4 S 0.157 5.843 5 C 0.040 3.960 6 C 0.136 3.864 7 N -0.677 5.677 8 C 0.108 3.892 9 C -0.120 4.120 10 C 0.143 3.857 11 N -0.611 5.611 12 C -0.264 4.264 13 H 0.066 0.934 14 C -0.051 4.051 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.279 1.279 18 H -0.293 1.293 19 H -0.275 1.275 20 C 0.177 3.823 21 C -0.111 4.111 22 N -0.496 5.496 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.204 0.796 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.346 0.654 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.014 0.986 34 H 0.056 0.944 35 H 0.250 0.750 36 H 0.054 0.946 37 H -0.004 1.004 38 H 0.050 0.950 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.430 13.566 4.344 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 C -0.403 4.403 4 S 0.412 5.588 5 C -0.238 4.238 6 C 0.004 3.996 7 N -0.310 5.310 8 C -0.001 4.001 9 C -0.159 4.159 10 C 0.017 3.983 11 N -0.335 5.335 12 C -0.394 4.394 13 H 0.084 0.916 14 C -0.246 4.246 15 N -0.581 5.581 16 Si 0.795 3.205 17 H -0.205 1.205 18 H -0.220 1.220 19 H -0.201 1.201 20 C 0.051 3.949 21 C -0.150 4.150 22 N -0.213 5.213 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.221 0.779 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.165 0.835 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.014 0.986 38 H 0.069 0.931 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.050 14.033 4.347 22.506 hybrid contribution -0.315 -0.999 -0.120 1.054 sum -17.365 13.035 4.227 22.120 Atomic orbital electron populations 1.20426 0.85294 1.04080 1.03602 1.20789 0.99620 0.86430 1.02168 1.27251 0.95000 1.05007 1.13032 1.84047 1.07287 1.01455 1.66022 1.26863 0.93678 0.99413 1.03803 1.20464 0.95107 0.92572 0.91424 1.60559 1.17325 1.41211 1.11915 1.21261 0.91911 0.89795 0.97158 1.22031 0.99308 0.97668 0.96904 1.21004 0.84711 0.93982 0.98564 1.44387 1.04791 1.58036 1.26303 1.19488 0.87114 1.42386 0.90417 0.91620 1.25782 1.00421 1.01036 0.97394 1.70176 1.19311 1.54674 1.13967 0.85350 0.78460 0.78323 0.78381 1.20499 1.21958 1.20085 1.20643 0.97458 0.89840 0.86975 1.21967 0.94378 0.97952 1.00743 1.66150 1.05026 1.33256 1.16861 0.90027 0.91242 0.88511 0.77886 0.92236 0.88464 0.83485 0.94262 0.92177 0.90191 0.96755 0.92552 0.94091 0.92735 0.98555 0.93140 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.31 71.24 0.73 -0.28 16 2 C 0.04 0.85 6.74 41.52 0.28 1.13 16 3 C -0.26 -4.53 11.13 66.78 0.74 -3.79 16 4 S 0.16 3.18 23.18 -56.49 -1.31 1.87 16 5 C 0.04 0.97 6.90 88.52 0.61 1.58 16 6 C 0.14 3.40 6.06 85.56 0.52 3.92 16 7 N -0.68 -18.68 6.30 -495.45 -3.12 -21.80 16 8 C 0.11 3.51 2.46 44.94 0.11 3.62 16 9 C -0.12 -3.99 5.36 30.67 0.16 -3.82 16 10 C 0.14 5.97 6.50 86.36 0.56 6.53 16 11 N -0.61 -31.23 3.01 -698.39 -2.10 -33.33 16 12 C -0.26 -14.77 9.59 84.04 0.81 -13.96 16 13 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16 14 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 15 N -0.94 -55.93 11.18 21.65 0.24 -55.69 16 16 Si 0.97 45.37 29.59 68.60 2.03 47.39 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 18 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 C 0.18 8.66 5.33 86.31 0.46 9.12 16 21 C -0.11 -4.24 5.59 30.67 0.17 -4.07 16 22 N -0.50 -12.56 10.53 -179.40 -1.89 -14.44 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.10 0.81 8.12 -2.39 -0.02 0.79 16 26 H 0.20 2.09 8.06 -2.91 -0.02 2.07 16 27 H 0.06 1.49 8.05 -2.39 -0.02 1.47 16 28 H 0.10 2.34 7.41 -2.39 -0.02 2.33 16 29 H 0.35 9.10 8.32 -89.69 -0.75 8.35 16 30 H 0.04 1.30 7.80 -2.39 -0.02 1.29 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 2.18 8.10 -2.39 -0.02 2.16 16 33 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 35 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 36 H 0.05 3.03 6.04 -2.39 -0.01 3.02 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.06 2.16 7.42 -2.38 -0.02 2.14 16 Total: -1.00 -65.47 328.30 -0.27 -65.74 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.30 Total: 12.75 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 5.58 Total: -2.50 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -6.87 Total: -125.26 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.31 Total: 1.87 kcal Total: -65.47 -0.27 -65.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735321275.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.297 kcal (2) G-P(sol) polarization free energy of solvation -65.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds