Wall clock time and date at job start Tue Mar 31 2020 07:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99680 * 2 1 4 4 O 1.20827 * 119.99922 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99984 * 179.72730 * 3 2 1 6 6 N 1.46498 * 109.47129 * 180.27673 * 5 3 2 7 7 C 1.36814 * 119.99977 * 89.99920 * 6 5 3 8 8 H 1.08003 * 120.00103 * 171.18331 * 7 6 5 9 9 C 1.39074 * 120.00133 * 351.18118 * 7 6 5 10 10 N 1.31343 * 119.99864 * 336.00855 * 9 7 6 11 11 Si 1.86803 * 120.00190 * 156.01549 * 9 7 6 12 12 H 1.48500 * 109.47547 * 59.99504 * 11 9 7 13 13 H 1.48497 * 109.46959 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46680 * 299.99596 * 11 9 7 15 15 C 1.34771 * 120.00316 * 269.99910 * 6 5 3 16 16 O 1.21666 * 119.99701 * 3.94952 * 15 6 5 17 17 C 1.46956 * 120.00406 * 183.94885 * 15 6 5 18 18 C 1.33124 * 119.99850 * 174.08222 * 17 15 6 19 19 C 1.51444 * 126.33885 * 179.68802 * 18 17 15 20 20 C 1.54279 * 106.84885 * 179.52868 * 19 18 17 21 21 C 1.54980 * 103.83885 * 337.23535 * 20 19 18 22 22 H 1.08993 * 110.83609 * 278.65964 * 21 20 19 23 23 C 1.53001 * 110.83627 * 155.08062 * 21 20 19 24 24 C 1.51844 * 126.34518 * 359.97438 * 18 17 15 25 25 H 1.09006 * 109.46549 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47291 * 299.99443 * 1 2 3 27 27 H 1.08995 * 109.47537 * 59.99997 * 1 2 3 28 28 H 1.09004 * 109.46929 * 300.27591 * 5 3 2 29 29 H 1.08998 * 109.47385 * 60.27753 * 5 3 2 30 30 H 0.97005 * 120.00228 * 174.75131 * 10 9 7 31 31 H 1.08000 * 119.99754 * 354.08395 * 17 15 6 32 32 H 1.09005 * 109.98305 * 299.01380 * 19 18 17 33 33 H 1.09000 * 109.98418 * 60.31310 * 19 18 17 34 34 H 1.08996 * 110.71252 * 218.55132 * 20 19 18 35 35 H 1.08999 * 110.47562 * 95.80443 * 20 19 18 36 36 H 1.09000 * 109.47068 * 305.63684 * 23 21 20 37 37 H 1.09004 * 109.46927 * 65.63076 * 23 21 20 38 38 H 1.08993 * 109.47498 * 185.63641 * 23 21 20 39 39 H 1.09008 * 110.43747 * 322.50610 * 24 18 17 40 40 H 1.08994 * 110.44204 * 84.90004 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0062 6 7 3.9815 2.6799 0.0116 7 6 4.1707 3.3327 1.1990 8 1 4.6116 4.3186 1.2089 9 6 3.7952 2.7269 2.3932 10 7 2.8693 1.7954 2.3942 11 14 4.6076 3.2381 3.9957 12 1 4.3648 4.6835 4.2349 13 1 4.0353 2.4476 5.1150 14 1 6.0692 2.9890 3.9112 15 6 4.1772 3.3292 -1.1530 16 8 3.9400 2.7713 -2.2079 17 6 4.6771 4.7112 -1.1489 18 6 4.9823 5.3120 -2.2969 19 6 5.4995 6.7260 -2.4600 20 6 5.7129 6.9527 -3.9711 21 6 5.8739 5.5207 -4.5416 22 1 6.8909 5.1572 -4.3951 23 6 5.4869 5.4777 -6.0212 24 6 4.8706 4.7087 -3.6859 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.9524 0.7785 0.8965 29 1 3.9596 0.7833 -0.8835 30 1 2.6610 1.3194 3.2134 31 1 4.7969 5.2392 -0.2144 32 1 4.7686 7.4368 -2.0741 33 1 6.4456 6.8400 -1.9310 34 1 6.6139 7.5395 -4.1494 35 1 4.8442 7.4441 -4.4093 36 1 4.4815 5.8800 -6.1456 37 1 6.1917 6.0761 -6.5986 38 1 5.5117 4.4466 -6.3735 39 1 5.1512 3.6555 -3.6671 40 1 3.8576 4.8250 -4.0711 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753624545.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:24 Heat of formation + Delta-G solvation = -103.376224 kcal Electronic energy + Delta-G solvation = -22718.003825 eV Core-core repulsion = 19305.446702 eV Total energy + Delta-G solvation = -3412.557123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.46369 -38.64979 -37.59848 -35.38339 -34.56058 -32.19632 -31.59209 -29.64274 -28.49709 -26.72428 -26.03798 -24.81799 -23.49204 -20.56457 -19.84092 -19.40025 -18.33903 -16.54556 -16.45744 -16.39189 -15.46626 -15.37767 -15.10288 -14.45896 -14.35189 -13.74607 -13.48432 -13.37777 -13.02057 -12.74422 -12.45471 -12.34747 -12.03326 -11.72200 -11.62748 -11.43295 -11.32645 -11.22301 -10.82163 -10.74085 -10.70272 -10.49955 -10.46114 -10.31939 -9.98283 -9.77100 -9.51698 -8.96517 -8.45866 -8.33599 -7.97504 -6.53612 -3.92502 2.22763 3.12366 3.18834 3.20910 3.65307 3.78300 4.08752 4.35334 4.56659 4.89484 4.98966 5.06530 5.14356 5.47633 5.61703 5.66771 5.73290 5.76235 5.79147 5.81433 5.96836 5.99365 6.05789 6.12792 6.14446 6.20345 6.28064 6.35048 6.38552 6.50042 6.66023 6.68935 6.78103 7.15583 7.27178 7.39154 7.49001 7.59925 8.23359 8.96714 9.17291 9.38988 9.80171 10.53161 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.005632 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.983663 B = 4970.665602 C = 6368.582475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.488 3.512 4 O -0.501 6.501 5 C 0.155 3.845 6 N -0.421 5.421 7 C -0.327 4.327 8 H 0.108 0.892 9 C 0.035 3.965 10 N -0.866 5.866 11 Si 0.922 3.078 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.494 3.506 16 O -0.602 6.602 17 C -0.163 4.163 18 C -0.084 4.084 19 C -0.094 4.094 20 C -0.118 4.118 21 C -0.103 4.103 22 H 0.073 0.927 23 C -0.140 4.140 24 C -0.082 4.082 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.123 0.877 29 H 0.083 0.917 30 H 0.273 0.727 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.768 2.933 -6.292 7.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.294 6.294 3 C 0.329 3.671 4 O -0.386 6.386 5 C 0.029 3.971 6 N -0.138 5.138 7 C -0.454 4.454 8 H 0.125 0.875 9 C -0.169 4.169 10 N -0.505 5.505 11 Si 0.748 3.252 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.286 3.714 16 O -0.491 6.491 17 C -0.184 4.184 18 C -0.087 4.087 19 C -0.131 4.131 20 C -0.155 4.155 21 C -0.122 4.122 22 H 0.092 0.908 23 C -0.198 4.198 24 C -0.118 4.118 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.141 0.859 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.254 2.877 -6.605 7.905 hybrid contribution -0.130 0.339 1.285 1.336 sum 3.124 3.216 -5.320 6.957 Atomic orbital electron populations 1.22916 0.78849 1.01706 1.01579 1.86456 1.21574 1.35582 1.85751 1.23904 0.92192 0.80535 0.70470 1.90514 1.66473 1.36385 1.45243 1.20604 0.87354 0.85532 1.03628 1.43361 1.56343 1.08441 1.05704 1.19716 1.39660 1.03612 0.82410 0.87451 1.25170 0.94653 0.97407 0.99658 1.69845 1.25144 1.25663 1.29857 0.86066 0.79589 0.78843 0.80676 1.19799 1.20905 1.19744 1.18107 0.83263 0.86616 0.83369 1.90597 1.58227 1.69238 1.30995 1.22089 1.03333 0.95634 0.97305 1.22586 0.96400 0.94870 0.94860 1.21192 1.00849 0.94452 0.96603 1.22417 1.01140 0.96912 0.95063 1.22198 0.99740 0.95529 0.94692 0.90846 1.21725 1.00979 1.01565 0.95502 1.21545 0.98613 1.00643 0.91036 0.89680 0.92653 0.93244 0.85887 0.89879 0.91583 0.85625 0.90935 0.90921 0.91906 0.91656 0.92773 0.93168 0.92628 0.88988 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.86 16 2 O -0.38 -8.33 10.57 -39.26 -0.41 -8.74 16 3 C 0.49 12.40 6.01 36.00 0.22 12.61 16 4 O -0.50 -14.33 15.91 -18.75 -0.30 -14.62 16 5 C 0.15 3.78 5.22 -5.20 -0.03 3.75 16 6 N -0.42 -10.78 2.11 -117.50 -0.25 -11.03 16 7 C -0.33 -8.28 9.28 -15.02 -0.14 -8.42 16 8 H 0.11 2.56 5.75 -52.48 -0.30 2.25 16 9 C 0.04 0.88 4.92 -17.45 -0.09 0.79 16 10 N -0.87 -22.44 8.90 55.50 0.49 -21.94 16 11 Si 0.92 19.18 29.62 -169.99 -5.04 14.14 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 15 C 0.49 12.30 7.56 -12.73 -0.10 12.20 16 16 O -0.60 -15.77 13.47 5.22 0.07 -15.70 16 17 C -0.16 -3.45 9.23 -37.83 -0.35 -3.80 16 18 C -0.08 -1.53 6.15 -100.20 -0.62 -2.15 16 19 C -0.09 -1.31 6.62 -26.85 -0.18 -1.49 16 20 C -0.12 -1.43 6.32 -25.02 -0.16 -1.59 16 21 C -0.10 -1.38 3.53 -88.59 -0.31 -1.69 16 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 23 C -0.14 -1.62 9.28 37.16 0.34 -1.27 16 24 C -0.08 -1.42 4.78 -26.34 -0.13 -1.55 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 27 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.12 2.96 6.29 -51.93 -0.33 2.63 16 29 H 0.08 1.90 7.48 -51.93 -0.39 1.51 16 30 H 0.27 6.74 8.32 -40.82 -0.34 6.41 16 31 H 0.13 2.53 6.07 -52.49 -0.32 2.21 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.76 8.02 -51.93 -0.42 0.34 16 36 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.83 6.44 -51.92 -0.33 1.49 16 40 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -30.93 329.13 -6.80 -37.73 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.86 Total: 5.96 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -0.46 Total: 9.25 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.25 Total: -32.97 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.64 Total: -39.07 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.04 Total: 14.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.93 -6.80 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753624545.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.650 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds