Wall clock time and date at job start Tue Mar 31 2020 07:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34222 * 116.99839 * 2 1 4 4 O 1.20824 * 120.00318 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99758 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47208 * 180.02562 * 5 3 2 7 7 C 1.36814 * 119.99986 * 96.08208 * 6 5 3 8 8 H 1.08005 * 119.99876 * 160.72571 * 7 6 5 9 9 C 1.39072 * 120.00260 * 340.46167 * 7 6 5 10 10 N 1.31353 * 119.99670 * 341.31080 * 9 7 6 11 11 Si 1.86798 * 120.00221 * 161.31483 * 9 7 6 12 12 H 1.48503 * 109.47103 * 89.99766 * 11 9 7 13 13 H 1.48504 * 109.47054 * 209.99482 * 11 9 7 14 14 H 1.48491 * 109.47210 * 329.99626 * 11 9 7 15 15 C 1.34780 * 119.99897 * 276.09145 * 6 5 3 16 16 O 1.21658 * 120.00289 * 359.97438 * 15 6 5 17 17 C 1.46956 * 119.99872 * 180.02562 * 15 6 5 18 18 C 1.33121 * 119.99630 * 179.97438 * 17 15 6 19 19 C 1.51448 * 126.33462 * 180.02562 * 18 17 15 20 20 C 1.54286 * 106.84637 * 180.33129 * 19 18 17 21 21 C 1.54982 * 103.74845 * 23.12590 * 20 19 18 22 22 H 1.08998 * 110.83193 * 81.32638 * 21 20 19 23 23 C 1.53001 * 110.83059 * 204.69976 * 21 20 19 24 24 C 1.51838 * 126.34648 * 359.70621 * 18 17 15 25 25 H 1.08993 * 109.47034 * 60.00094 * 1 2 3 26 26 H 1.09001 * 109.46646 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47092 * 299.99481 * 1 2 3 28 28 H 1.09005 * 109.47207 * 60.00588 * 5 3 2 29 29 H 1.08995 * 109.47505 * 300.00166 * 5 3 2 30 30 H 0.97000 * 120.00215 * 180.02562 * 10 9 7 31 31 H 1.07997 * 119.99825 * 359.97438 * 17 15 6 32 32 H 1.08995 * 109.99028 * 299.67895 * 19 18 17 33 33 H 1.09000 * 109.98952 * 60.94848 * 19 18 17 34 34 H 1.09002 * 110.56503 * 141.69263 * 20 19 18 35 35 H 1.09000 * 110.57259 * 264.40989 * 20 19 18 36 36 H 1.09002 * 109.47012 * 60.00537 * 23 21 20 37 37 H 1.09000 * 109.47000 * 180.02562 * 23 21 20 38 38 H 1.09000 * 109.47325 * 300.00219 * 23 21 20 39 39 H 1.09004 * 110.43938 * 274.97550 * 24 18 17 40 40 H 1.09003 * 110.44061 * 37.49192 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.2957 3.2998 1.1795 8 1 4.8861 4.2041 1.1733 9 6 3.8499 2.7688 2.3851 10 7 2.8506 1.9164 2.3976 11 14 4.6721 3.2677 3.9864 12 1 3.9864 4.4611 4.5441 13 1 4.5846 2.1478 4.9577 14 1 6.0986 3.5909 3.7307 15 6 4.0545 3.3613 -1.1594 16 8 3.7757 2.8099 -2.2073 17 6 4.4718 4.7704 -1.1589 18 6 4.5441 5.4434 -2.3052 19 6 4.9551 6.8916 -2.4710 20 6 4.8731 7.2098 -3.9785 21 6 3.8755 6.1564 -4.5236 22 1 2.8465 6.4675 -4.3436 23 6 4.1120 5.9031 -6.0139 24 6 4.2364 4.8996 -3.6890 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9564 0.7806 -0.8892 29 1 3.9557 0.7809 0.8907 30 1 2.5393 1.5462 3.2385 31 1 4.7197 5.2598 -0.2287 32 1 4.2748 7.5379 -1.9164 33 1 5.9756 7.0325 -2.1150 34 1 4.4901 8.2180 -4.1368 35 1 5.8500 7.0944 -4.4480 36 1 5.1272 5.5354 -6.1633 37 1 3.3997 5.1607 -6.3737 38 1 3.9774 6.8330 -6.5664 39 1 5.1118 4.4013 -4.1055 40 1 3.3900 4.2139 -3.6490 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753624552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:34 Heat of formation + Delta-G solvation = -105.640140 kcal Electronic energy + Delta-G solvation = -22777.480942 eV Core-core repulsion = 19364.825648 eV Total energy + Delta-G solvation = -3412.655293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.45861 -38.63093 -37.57024 -35.35864 -34.55583 -32.16952 -31.57008 -29.61868 -28.48364 -26.70737 -26.01917 -24.80193 -23.47548 -20.57153 -19.82545 -19.37608 -18.31027 -16.56278 -16.41128 -16.36730 -15.48048 -15.38604 -15.09022 -14.44792 -14.32471 -13.80786 -13.41256 -13.34200 -12.99651 -12.75769 -12.42654 -12.35216 -12.00656 -11.74217 -11.56470 -11.40024 -11.27133 -11.23599 -10.85530 -10.74834 -10.69953 -10.52851 -10.42869 -10.30809 -9.94981 -9.77802 -9.54227 -9.00505 -8.39693 -8.31371 -7.88417 -6.50181 -3.97471 2.25562 3.10804 3.17868 3.21571 3.65275 3.76254 4.08089 4.41351 4.58756 4.91949 5.01530 5.07626 5.15313 5.49079 5.63556 5.68931 5.72513 5.78718 5.80583 5.80979 5.97857 5.98936 6.07608 6.13809 6.16596 6.20739 6.29996 6.36975 6.40500 6.49782 6.63925 6.69203 6.82232 7.19168 7.29329 7.40538 7.50795 7.63969 8.25416 8.98590 9.16547 9.40963 9.82606 10.57211 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.005829 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.807411 B = 4802.459074 C = 6230.446485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.377 6.377 3 C 0.485 3.515 4 O -0.498 6.498 5 C 0.158 3.842 6 N -0.422 5.422 7 C -0.331 4.331 8 H 0.105 0.895 9 C 0.035 3.965 10 N -0.869 5.869 11 Si 0.926 3.074 12 H -0.278 1.278 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.499 3.501 16 O -0.601 6.601 17 C -0.163 4.163 18 C -0.085 4.085 19 C -0.094 4.094 20 C -0.117 4.117 21 C -0.104 4.104 22 H 0.073 0.927 23 C -0.140 4.140 24 C -0.084 4.084 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.272 0.728 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 3.268 -6.305 7.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.295 6.295 3 C 0.326 3.674 4 O -0.382 6.382 5 C 0.032 3.968 6 N -0.139 5.139 7 C -0.459 4.459 8 H 0.123 0.877 9 C -0.169 4.169 10 N -0.507 5.507 11 Si 0.752 3.248 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.193 1.193 15 C 0.291 3.709 16 O -0.489 6.489 17 C -0.183 4.183 18 C -0.087 4.087 19 C -0.131 4.131 20 C -0.155 4.155 21 C -0.122 4.122 22 H 0.092 0.908 23 C -0.197 4.197 24 C -0.121 4.121 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.138 0.862 30 H 0.083 0.917 31 H 0.144 0.856 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.794 3.174 -6.625 7.562 hybrid contribution -0.096 0.363 1.313 1.366 sum 1.698 3.536 -5.312 6.604 Atomic orbital electron populations 1.22919 0.78794 1.01727 1.01610 1.86453 1.21624 1.35591 1.85792 1.23915 0.92250 0.80549 0.70667 1.90515 1.66436 1.36344 1.44902 1.20428 0.87282 0.85674 1.03410 1.43270 1.56477 1.07908 1.06274 1.19660 1.32135 1.11674 0.82405 0.87750 1.25284 0.94715 0.97127 0.99815 1.69772 1.21958 1.30920 1.28048 0.85942 0.79679 0.78284 0.80864 1.20347 1.20668 1.19254 1.18202 0.82289 0.86727 0.83640 1.90575 1.56350 1.70299 1.31705 1.22089 1.03916 0.95046 0.97251 1.22591 0.96467 0.94756 0.94906 1.21195 1.01271 0.94007 0.96627 1.22414 0.99433 0.98493 0.95161 1.22248 0.99073 0.96176 0.94710 0.90832 1.21727 1.01602 1.00930 0.95476 1.21641 1.02955 0.96319 0.91164 0.93192 0.89663 0.92656 0.90000 0.86186 0.91686 0.85626 0.90937 0.90970 0.91966 0.91634 0.92766 0.92698 0.93175 0.90872 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.86 16 2 O -0.38 -8.32 10.57 -39.24 -0.41 -8.74 16 3 C 0.49 12.30 6.07 36.01 0.22 12.52 16 4 O -0.50 -14.17 15.65 -18.75 -0.29 -14.47 16 5 C 0.16 3.85 5.13 -5.19 -0.03 3.82 16 6 N -0.42 -10.81 2.17 -117.49 -0.25 -11.06 16 7 C -0.33 -8.37 9.08 -15.02 -0.14 -8.51 16 8 H 0.10 2.47 5.98 -52.48 -0.31 2.16 16 9 C 0.04 0.88 4.92 -17.45 -0.09 0.80 16 10 N -0.87 -22.68 9.12 55.50 0.51 -22.17 16 11 Si 0.93 19.21 29.59 -169.99 -5.03 14.18 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 15 C 0.50 12.50 7.36 -12.73 -0.09 12.40 16 16 O -0.60 -15.79 13.43 5.23 0.07 -15.72 16 17 C -0.16 -3.48 9.21 -37.83 -0.35 -3.83 16 18 C -0.08 -1.56 6.15 -100.20 -0.62 -2.18 16 19 C -0.09 -1.34 6.61 -26.84 -0.18 -1.52 16 20 C -0.12 -1.46 6.32 -25.01 -0.16 -1.61 16 21 C -0.10 -1.45 3.54 -88.45 -0.31 -1.76 16 22 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 23 C -0.14 -1.65 9.29 37.16 0.35 -1.30 16 24 C -0.08 -1.49 4.88 -26.20 -0.13 -1.62 16 25 H 0.05 0.88 8.13 -51.93 -0.42 0.45 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 28 H 0.08 1.86 7.61 -51.93 -0.40 1.47 16 29 H 0.12 2.88 6.48 -51.93 -0.34 2.55 16 30 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.13 2.56 6.18 -52.49 -0.32 2.24 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 36 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 1.28 8.01 -51.93 -0.42 0.87 16 40 H 0.10 2.02 6.25 -51.93 -0.32 1.69 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -30.99 329.20 -6.80 -37.78 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.89 Total: 6.17 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -0.45 Total: 9.06 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.25 Total: -33.24 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.64 Total: -38.92 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.99 -6.80 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753624552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.857 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds