Wall clock time and date at job start Tue Mar 31 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00049 * 2 1 4 4 O 1.20825 * 120.00204 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00110 * 179.97438 * 3 2 1 6 6 N 1.46493 * 109.47419 * 180.02562 * 5 3 2 7 7 C 1.36820 * 119.99958 * 265.40393 * 6 5 3 8 8 H 1.08005 * 120.00349 * 142.98644 * 7 6 5 9 9 C 1.39069 * 120.00059 * 322.97990 * 7 6 5 10 10 N 1.31348 * 120.00010 * 160.89711 * 9 7 6 11 11 Si 1.86800 * 120.00012 * 340.89985 * 9 7 6 12 12 H 1.48508 * 109.47007 * 94.28069 * 11 9 7 13 13 H 1.48501 * 109.47147 * 214.27680 * 11 9 7 14 14 H 1.48501 * 109.47245 * 334.27933 * 11 9 7 15 15 C 1.34775 * 120.00320 * 85.39476 * 6 5 3 16 16 O 1.21664 * 119.99241 * 3.96406 * 15 6 5 17 17 C 1.46945 * 120.00705 * 183.95457 * 15 6 5 18 18 C 1.50699 * 120.00084 * 259.18743 * 17 15 6 19 19 C 1.33116 * 120.00029 * 79.17883 * 17 15 6 20 20 C 1.51453 * 126.34361 * 180.02562 * 19 17 15 21 21 C 1.54284 * 106.84911 * 180.33784 * 20 19 17 22 22 C 1.54978 * 103.75047 * 23.12634 * 21 20 19 23 23 C 1.51852 * 126.34124 * 359.97438 * 19 17 15 24 24 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47081 * 300.00012 * 1 2 3 26 26 H 1.09004 * 109.47334 * 59.99947 * 1 2 3 27 27 H 1.09001 * 109.46531 * 60.00392 * 5 3 2 28 28 H 1.09003 * 109.47167 * 300.00777 * 5 3 2 29 29 H 0.97001 * 120.00005 * 180.02562 * 10 9 7 30 30 H 1.09002 * 109.47076 * 264.78070 * 18 17 15 31 31 H 1.08996 * 109.47396 * 24.78039 * 18 17 15 32 32 H 1.09005 * 109.47630 * 144.78830 * 18 17 15 33 33 H 1.09001 * 109.98524 * 299.68537 * 20 19 17 34 34 H 1.08997 * 109.98160 * 60.99235 * 20 19 17 35 35 H 1.09004 * 110.56583 * 141.69197 * 21 20 19 36 36 H 1.08993 * 110.56678 * 264.55422 * 21 20 19 37 37 H 1.09006 * 110.83179 * 204.70315 * 22 21 20 38 38 H 1.08994 * 110.83978 * 81.12464 * 22 21 20 39 39 H 1.09000 * 110.44081 * 274.96688 * 23 19 17 40 40 H 1.09000 * 110.43756 * 37.36625 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.2672 3.3090 -1.1797 8 1 3.9963 4.3453 -1.3187 9 6 4.9064 2.6145 -2.2011 10 7 4.8515 3.0627 -3.4345 11 14 5.8430 1.0441 -1.8188 12 1 4.9562 -0.1269 -2.0378 13 1 7.0255 0.9432 -2.7115 14 1 6.2918 1.0674 -0.4035 15 6 4.0826 3.3522 1.1647 16 8 3.8989 2.7740 2.2192 17 6 4.4145 4.7837 1.1597 18 6 5.8214 5.2320 1.4607 19 6 3.4725 5.6844 0.8891 20 6 3.6541 7.1874 0.8446 21 6 2.2782 7.7940 0.4992 22 6 1.2723 6.7011 0.9413 23 6 2.0170 5.3953 0.5669 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 3.9563 0.7806 -0.8892 28 1 3.9557 0.7808 0.8908 29 1 5.2970 2.5781 -4.1469 30 1 5.9035 5.4862 2.5175 31 1 6.5175 4.4268 1.2257 32 1 6.0610 6.1073 0.8569 33 1 3.9884 7.5512 1.8162 34 1 4.3812 7.4521 0.0769 35 1 2.1142 8.7147 1.0593 36 1 2.1985 7.9771 -0.5723 37 1 0.3379 6.7869 0.3864 38 1 1.0926 6.7510 2.0152 39 1 1.8977 5.1797 -0.4949 40 1 1.6527 4.5616 1.1671 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753628501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:56 Heat of formation + Delta-G solvation = -101.680910 kcal Electronic energy + Delta-G solvation = -23525.113324 eV Core-core repulsion = 20112.629716 eV Total energy + Delta-G solvation = -3412.483608 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06705 -38.96008 -37.35011 -35.90001 -34.83919 -32.79159 -32.02383 -29.05712 -28.36363 -27.08414 -26.62780 -25.09374 -23.21333 -21.01492 -20.35306 -19.60642 -18.07478 -17.36862 -16.83259 -16.07106 -15.82672 -15.55354 -15.26951 -15.09791 -14.59767 -13.93950 -13.26979 -13.21601 -12.93036 -12.89797 -12.73439 -12.43800 -12.40269 -11.88995 -11.83288 -11.76175 -11.53085 -11.25499 -11.00463 -10.73453 -10.57952 -10.54815 -10.40930 -10.34780 -10.25092 -10.05881 -9.87906 -9.31137 -8.73870 -8.06950 -7.82416 -6.51573 -4.12627 2.56956 2.83794 2.94750 3.04533 3.17750 3.20254 3.70894 4.02423 4.32596 4.89422 4.97958 5.15233 5.34237 5.35504 5.43174 5.43670 5.63790 5.64518 5.74261 5.77515 5.82637 5.88225 5.98133 6.00110 6.16909 6.17794 6.19373 6.28314 6.42303 6.50176 6.55896 6.69100 6.80870 6.86737 7.10956 7.13470 7.48457 7.96848 8.23604 8.38439 8.85149 9.22005 9.52368 10.58950 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.008398 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.538480 B = 3333.284696 C = 4294.599320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.486 6.486 5 C 0.105 3.895 6 N -0.443 5.443 7 C -0.333 4.333 8 H 0.113 0.887 9 C 0.064 3.936 10 N -0.856 5.856 11 Si 0.859 3.141 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.256 1.256 15 C 0.541 3.459 16 O -0.590 6.590 17 C -0.118 4.118 18 C -0.091 4.091 19 C -0.100 4.100 20 C -0.086 4.086 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.087 4.087 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.276 0.724 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.458 1.588 4.784 6.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.289 3.711 4 O -0.371 6.371 5 C -0.021 4.021 6 N -0.163 5.163 7 C -0.460 4.460 8 H 0.131 0.869 9 C -0.143 4.143 10 N -0.491 5.491 11 Si 0.686 3.314 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.180 1.180 15 C 0.332 3.668 16 O -0.474 6.474 17 C -0.120 4.120 18 C -0.148 4.148 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.159 4.159 22 C -0.160 4.160 23 C -0.124 4.124 24 H 0.112 0.888 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.727 1.603 5.073 6.496 hybrid contribution 0.221 -0.894 -0.301 0.969 sum -3.506 0.709 4.772 5.964 Atomic orbital electron populations 1.23129 0.77545 1.02812 1.02230 1.86523 1.22665 1.34540 1.84929 1.24728 0.92775 0.81260 0.72304 1.90598 1.66527 1.36109 1.43869 1.21416 0.87045 0.88681 1.04924 1.43360 1.57847 1.08010 1.07057 1.19135 1.38246 0.99281 0.89368 0.86932 1.25358 0.96125 0.98039 0.94809 1.69695 1.39962 1.40221 0.99181 0.87217 0.80752 0.83291 0.80118 1.19714 1.20782 1.18022 1.18312 0.78309 0.87303 0.82869 1.90664 1.55288 1.69926 1.31558 1.20331 0.95912 0.91936 1.03861 1.20479 0.92487 1.01283 1.00569 1.22197 0.95333 0.94075 0.98538 1.21091 0.97646 0.92310 1.01241 1.22343 0.94869 0.97634 1.01085 1.22489 0.97815 0.95209 1.00438 1.21370 0.91507 0.96934 1.02557 0.88773 0.92342 0.92197 0.87540 0.87176 0.91372 0.92007 0.91855 0.91622 0.91370 0.90768 0.92011 0.91451 0.91825 0.91957 0.89667 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.92 10.57 -39.25 -0.41 -7.33 16 3 C 0.45 9.89 7.99 36.01 0.29 10.18 16 4 O -0.49 -11.63 15.74 -18.75 -0.30 -11.92 16 5 C 0.10 2.36 4.59 -5.20 -0.02 2.34 16 6 N -0.44 -10.83 1.73 -117.50 -0.20 -11.04 16 7 C -0.33 -8.64 9.15 -15.02 -0.14 -8.77 16 8 H 0.11 3.12 6.88 -52.48 -0.36 2.75 16 9 C 0.06 1.65 5.34 -17.45 -0.09 1.56 16 10 N -0.86 -23.20 13.95 55.50 0.77 -22.42 16 11 Si 0.86 19.36 24.82 -169.99 -4.22 15.14 16 12 H -0.27 -5.79 6.66 56.52 0.38 -5.41 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 14 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 15 C 0.54 13.13 6.00 -12.74 -0.08 13.05 16 16 O -0.59 -15.38 16.74 5.22 0.09 -15.29 16 17 C -0.12 -2.49 4.43 -102.88 -0.46 -2.95 16 18 C -0.09 -1.60 9.69 36.01 0.35 -1.26 16 19 C -0.10 -1.95 5.36 -100.19 -0.54 -2.48 16 20 C -0.09 -1.32 5.61 -26.84 -0.15 -1.47 16 21 C -0.12 -1.69 6.87 -25.01 -0.17 -1.86 16 22 C -0.12 -1.87 6.95 -24.68 -0.17 -2.05 16 23 C -0.09 -1.70 6.09 -26.30 -0.16 -1.86 16 24 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 26 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.11 2.38 3.15 -51.93 -0.16 2.22 16 28 H 0.11 2.33 7.51 -51.93 -0.39 1.95 16 29 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 32 H 0.06 1.03 7.36 -51.93 -0.38 0.64 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 40 H 0.07 1.55 7.45 -51.93 -0.39 1.17 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -30.58 331.12 -5.46 -36.04 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.90 Total: 5.80 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -0.27 Total: 6.04 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.57 Total: -33.46 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.62 Total: -34.54 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.22 Total: 15.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.58 -5.46 -36.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753628501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.643 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds