Wall clock time and date at job start Tue Mar 31 2020 05:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.46956 * 119.99975 * 2 1 4 4 O 1.21529 * 120.00135 * 179.97438 * 3 2 1 5 5 O 1.34795 * 119.99616 * 0.02562 * 3 2 1 6 6 C 1.45205 * 116.99755 * 180.02562 * 5 3 2 7 7 C 1.50694 * 109.47110 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00410 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00043 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00220 * 179.97438 * 9 7 6 11 11 C 1.50693 * 109.47514 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99425 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00370 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00081 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00396 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46846 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47147 * 119.99461 * 15 13 11 18 18 H 1.48497 * 109.47123 * 240.00314 * 15 13 11 19 19 C 1.33083 * 120.00046 * 179.97438 * 2 1 3 20 20 C 1.51446 * 126.33801 * 180.02562 * 19 2 1 21 21 C 1.54282 * 106.84905 * 180.33708 * 20 19 2 22 22 C 1.54987 * 103.74985 * 23.12444 * 21 20 19 23 23 C 1.51843 * 126.34419 * 359.97438 * 19 2 1 24 24 H 1.09002 * 109.47631 * 270.00125 * 1 2 3 25 25 H 1.09004 * 109.47481 * 30.00081 * 1 2 3 26 26 H 1.09006 * 109.47269 * 150.00194 * 1 2 3 27 27 H 1.08996 * 109.46795 * 299.99438 * 6 5 3 28 28 H 1.08998 * 109.47425 * 59.99650 * 6 5 3 29 29 H 0.96995 * 120.00139 * 359.97438 * 9 7 6 30 30 H 1.09003 * 109.47037 * 300.00558 * 10 9 7 31 31 H 1.09004 * 109.47038 * 59.99557 * 10 9 7 32 32 H 0.96998 * 120.00406 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.99044 * 299.68400 * 20 19 2 34 34 H 1.09005 * 109.98620 * 60.99350 * 20 19 2 35 35 H 1.08996 * 110.57285 * 141.69135 * 21 20 19 36 36 H 1.09005 * 110.57234 * 264.55907 * 21 20 19 37 37 H 1.08999 * 110.83018 * 204.70408 * 22 21 20 38 38 H 1.09001 * 110.83046 * 81.12560 * 22 21 20 39 39 H 1.09004 * 110.43923 * 274.96951 * 23 19 2 40 40 H 1.09001 * 110.44013 * 37.36016 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2417 1.2727 0.0000 4 8 3.4570 1.2727 0.0005 5 8 1.5677 2.4400 0.0005 6 6 2.3585 3.6578 -0.0001 7 6 1.4405 4.8529 0.0000 8 8 0.2381 4.6940 0.0000 9 7 1.9556 6.0983 0.0000 10 6 1.0631 7.2602 -0.0005 11 6 1.8838 8.5240 0.0003 12 1 2.9623 8.4675 0.0015 13 6 1.2579 9.7525 0.0005 14 7 -0.0554 9.8213 0.0006 15 14 2.2752 11.3192 0.0007 16 1 3.7190 10.9719 0.0012 17 1 1.9576 12.1157 -1.2117 18 1 1.9577 12.1153 1.2134 19 6 2.1724 -1.1525 0.0005 20 6 3.6776 -1.3197 0.0011 21 6 3.9590 -2.8366 -0.0071 22 6 2.6656 -3.4480 -0.6031 23 6 1.5631 -2.5434 0.0017 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 2.9879 3.6827 0.8894 28 1 2.9866 3.6827 -0.8905 29 1 2.9171 6.2255 0.0003 30 1 0.4346 7.2351 -0.8907 31 1 0.4339 7.2354 0.8893 32 1 -0.4959 10.6855 0.0011 33 1 4.1042 -0.8569 -0.8887 34 1 4.1024 -0.8669 0.8971 35 1 4.8169 -3.0636 -0.6401 36 1 4.1230 -3.2013 1.0070 37 1 2.5401 -4.4811 -0.2790 38 1 2.6701 -3.3797 -1.6910 39 1 1.3297 -2.8559 1.0196 40 1 0.6665 -2.5667 -0.6177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754159824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:01 Heat of formation + Delta-G solvation = -129.883368 kcal Electronic energy + Delta-G solvation = -21179.896899 eV Core-core repulsion = 17766.190341 eV Total energy + Delta-G solvation = -3413.706559 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.57648 -38.94864 -38.26584 -36.17370 -34.23504 -33.81186 -32.40170 -29.33144 -29.23963 -27.83635 -26.71046 -24.80814 -22.67953 -21.58740 -21.02534 -19.91914 -18.65153 -17.41277 -17.10742 -16.62198 -16.29465 -15.89784 -15.40673 -15.20485 -14.65872 -14.59144 -14.06796 -13.73714 -13.48883 -13.03126 -12.81026 -12.76312 -12.57053 -12.33609 -12.19575 -11.99646 -11.74731 -11.60567 -11.40144 -11.29325 -10.98974 -10.98359 -10.93626 -10.62285 -10.34604 -10.29754 -9.42014 -9.15545 -9.11008 -8.78438 -7.97773 -6.19576 -4.26852 0.97109 2.49984 2.83338 3.20358 3.22518 3.29635 3.32737 3.92064 4.17635 4.28907 4.34638 4.63901 4.69840 4.81740 4.93993 5.06483 5.15460 5.16654 5.21154 5.27544 5.36683 5.37336 5.47261 5.54609 5.58019 5.61385 5.72409 5.75017 5.90673 5.96264 6.11815 6.32112 6.45223 7.23513 7.32326 7.46355 7.60614 7.76316 7.92231 8.51241 8.72011 8.97822 9.39605 10.90628 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.049696 B = 0.002565 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.290797 B =10912.965794 C =11414.082874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.159 4.159 3 C 0.501 3.499 4 O -0.514 6.514 5 O -0.324 6.324 6 C 0.050 3.950 7 C 0.500 3.500 8 O -0.534 6.534 9 N -0.707 5.707 10 C 0.251 3.749 11 C -0.544 4.544 12 H 0.065 0.935 13 C 0.063 3.937 14 N -0.885 5.885 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.033 4.033 20 C -0.096 4.096 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.098 4.098 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.393 0.607 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.266 0.734 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.271 -25.236 -0.156 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.160 4.160 3 C 0.348 3.652 4 O -0.405 6.405 5 O -0.238 6.238 6 C -0.028 4.028 7 C 0.283 3.717 8 O -0.411 6.411 9 N -0.357 5.357 10 C 0.131 3.869 11 C -0.582 4.582 12 H 0.083 0.917 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.034 4.034 20 C -0.133 4.133 21 C -0.166 4.166 22 C -0.162 4.162 23 C -0.135 4.135 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.226 0.774 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.577 -25.144 -0.156 25.755 hybrid contribution 1.125 1.191 0.024 1.638 sum 6.702 -23.953 -0.132 24.873 Atomic orbital electron populations 1.20705 0.89427 1.03508 1.02906 1.20022 0.96776 0.88435 1.10813 1.21307 0.86057 0.84827 0.73014 1.90822 1.14775 1.88239 1.46626 1.86649 1.39878 1.13682 1.83626 1.22835 0.93550 0.81957 1.04456 1.19897 0.88952 0.84165 0.78719 1.90705 1.15039 1.85850 1.49523 1.46362 1.11211 1.05649 1.72519 1.19177 0.89461 0.80282 0.98023 1.21244 0.93288 0.90373 1.53330 0.91722 1.24956 0.95060 0.99388 0.94639 1.69981 1.07848 1.25557 1.48812 0.86336 0.80105 0.82550 0.77772 1.19611 1.20763 1.20771 1.22822 0.96660 0.93639 0.90283 1.21362 0.91910 0.96036 1.03991 1.22466 0.97886 0.94974 1.01288 1.22547 0.94354 0.98738 1.00573 1.21601 0.98781 0.90799 1.02282 0.90949 0.90152 0.91414 0.88615 0.88620 0.77443 0.95259 0.95262 0.92430 0.89442 0.89545 0.91111 0.91287 0.90854 0.91003 0.89155 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.58 36.00 0.34 -0.77 16 2 C -0.16 -1.88 6.00 -102.89 -0.62 -2.50 16 3 C 0.50 7.39 7.88 34.26 0.27 7.66 16 4 O -0.51 -7.99 13.90 -19.29 -0.27 -8.26 16 5 O -0.32 -5.39 9.02 -47.44 -0.43 -5.82 16 6 C 0.05 0.79 5.96 36.00 0.21 1.00 16 7 C 0.50 10.21 7.91 -10.99 -0.09 10.12 16 8 O -0.53 -13.21 16.50 -14.10 -0.23 -13.44 16 9 N -0.71 -14.82 5.55 -61.47 -0.34 -15.16 16 10 C 0.25 6.61 5.43 -5.20 -0.03 6.58 16 11 C -0.54 -14.65 9.28 -34.45 -0.32 -14.97 16 12 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.88 -25.93 13.29 55.43 0.74 -25.20 16 15 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.03 -0.32 6.12 -100.21 -0.61 -0.94 16 20 C -0.10 -0.91 4.82 -26.85 -0.13 -1.04 16 21 C -0.13 -0.86 6.87 -25.01 -0.17 -1.04 16 22 C -0.12 -0.73 6.95 -24.67 -0.17 -0.90 16 23 C -0.10 -0.65 6.07 -26.31 -0.16 -0.81 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.97 7.68 -51.93 -0.40 0.57 16 26 H 0.07 0.53 6.59 -51.93 -0.34 0.19 16 27 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.09 0.93 7.66 -51.93 -0.40 0.53 16 34 H 0.09 0.91 7.69 -51.93 -0.40 0.51 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.48 6.88 -51.93 -0.36 0.13 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -33.03 339.55 -8.00 -41.03 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.00 Total: 1.96 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.57 Total: 4.04 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.40 Total: -40.36 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.93 Total: -27.52 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.03 -8.00 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754159824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.857 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds