Wall clock time and date at job start Tue Mar 31 2020 07:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.74017 * 2 1 4 4 C 1.54986 * 110.83031 * 236.56732 * 2 1 3 5 5 C 1.54281 * 103.88177 * 204.62771 * 4 2 1 6 6 C 1.51839 * 106.65649 * 23.16485 * 5 4 2 7 7 C 1.33073 * 126.29946 * 180.36799 * 6 5 4 8 8 C 1.46952 * 120.00300 * 359.95401 * 7 6 5 9 9 O 1.21543 * 119.99661 * 0.02562 * 8 7 6 10 10 O 1.34795 * 120.00608 * 180.02562 * 8 7 6 11 11 C 1.45196 * 117.00166 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47160 * 179.97438 * 11 10 8 13 13 O 1.21279 * 119.99851 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00344 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00398 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47125 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00158 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99907 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99908 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00064 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47130 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47037 * 119.99727 * 20 18 16 23 23 H 1.48499 * 109.47613 * 240.00280 * 20 18 16 24 24 C 1.51845 * 107.35808 * 0.33029 * 6 5 4 25 25 H 1.08997 * 109.47043 * 183.43134 * 1 2 3 26 26 H 1.08998 * 109.47189 * 303.42969 * 1 2 3 27 27 H 1.08997 * 109.47176 * 63.43179 * 1 2 3 28 28 H 1.09002 * 110.57212 * 323.27252 * 4 2 1 29 29 H 1.09003 * 110.56596 * 85.99305 * 4 2 1 30 30 H 1.09002 * 109.98199 * 142.54125 * 5 4 2 31 31 H 1.08994 * 109.98614 * 263.85070 * 5 4 2 32 32 H 1.08002 * 120.00122 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.46670 * 299.99002 * 11 10 8 34 34 H 1.08994 * 109.47442 * 59.99576 * 11 10 8 35 35 H 0.97002 * 119.99993 * 359.97438 * 14 12 11 36 36 H 1.08993 * 109.46782 * 300.00198 * 15 14 12 37 37 H 1.09000 * 109.46611 * 60.00467 * 15 14 12 38 38 H 0.96993 * 120.00232 * 180.02562 * 19 18 16 39 39 H 1.08997 * 110.44189 * 217.48357 * 24 6 5 40 40 H 1.09006 * 110.44399 * 94.96423 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9160 1.0193 0.0000 4 6 2.0812 -0.7981 -1.2089 5 6 3.4853 -1.2428 -0.7497 6 6 3.4695 -1.2350 0.7686 7 6 4.4855 -1.5487 1.5687 8 6 5.7764 -1.9514 0.9936 9 8 5.9163 -1.9975 -0.2129 10 8 6.8055 -2.2697 1.8040 11 6 8.0510 -2.6578 1.1665 12 6 9.0784 -2.9745 2.2225 13 8 8.7896 -2.8817 3.3967 14 7 10.3183 -3.3608 1.8621 15 6 11.3173 -3.6681 2.8887 16 6 12.6099 -4.0710 2.2270 17 1 12.6802 -4.0961 1.1496 18 6 13.7026 -4.4087 2.9972 19 7 13.6166 -4.3795 4.3092 20 14 15.3046 -4.9088 2.1771 21 1 15.1414 -4.8613 0.7018 22 1 16.3830 -3.9731 2.5857 23 1 15.6633 -6.2889 2.5917 24 6 2.0809 -0.8023 1.2049 25 1 -0.3633 -1.0258 0.0615 26 1 -0.3633 0.5661 0.8576 27 1 -0.3633 0.4596 -0.9191 28 1 1.4529 -1.6649 -1.4141 29 1 2.1507 -0.1596 -2.0896 30 1 3.6966 -2.2471 -1.1170 31 1 4.2365 -0.5449 -1.1191 32 1 4.3613 -1.5076 2.6408 33 1 7.8828 -3.5388 0.5470 34 1 8.4110 -1.8390 0.5438 35 1 10.5492 -3.4354 0.9229 36 1 11.4855 -2.7866 3.5073 37 1 10.9574 -4.4864 3.5123 38 1 14.3853 -4.6167 4.8510 39 1 2.1401 -0.1681 2.0895 40 1 1.4548 -1.6729 1.4009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754196613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:41 Heat of formation + Delta-G solvation = -130.021500 kcal Electronic energy + Delta-G solvation = -20771.558686 eV Core-core repulsion = 17357.846137 eV Total energy + Delta-G solvation = -3413.712549 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.49007 -39.03131 -38.44759 -36.23332 -34.23053 -33.13562 -32.39978 -30.32229 -29.27040 -27.76682 -26.56160 -24.47289 -22.69267 -21.67240 -20.52550 -19.92234 -18.84012 -17.69450 -17.31032 -16.55878 -16.34018 -15.74450 -15.33431 -15.09338 -14.83955 -14.56994 -14.15236 -13.98364 -13.80250 -13.16122 -13.01640 -12.90216 -12.47682 -12.20992 -12.10507 -11.99396 -11.74265 -11.61486 -11.32674 -11.12429 -10.98426 -10.95902 -10.93086 -10.61988 -10.34451 -10.31672 -9.47756 -9.41754 -9.15233 -8.78188 -7.97480 -6.19357 -4.26639 0.95851 2.52096 2.87060 3.20873 3.22694 3.29775 3.32909 3.89815 4.12631 4.22288 4.35007 4.47656 4.66365 4.82226 5.00389 5.05113 5.09693 5.11829 5.16837 5.21307 5.24934 5.28237 5.37201 5.37885 5.46709 5.59441 5.70420 5.76638 5.80011 5.96707 6.06471 6.12917 6.43065 7.23937 7.32731 7.46761 7.60955 7.77907 7.92495 8.51590 8.72334 8.98262 9.39772 10.90863 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.064002 B = 0.002267 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.382238 B =12349.298005 C =12725.088319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.081 0.919 4 C -0.125 4.125 5 C -0.099 4.099 6 C -0.023 4.023 7 C -0.194 4.194 8 C 0.496 3.504 9 O -0.516 6.516 10 O -0.326 6.326 11 C 0.050 3.950 12 C 0.499 3.501 13 O -0.534 6.534 14 N -0.707 5.707 15 C 0.251 3.749 16 C -0.545 4.545 17 H 0.065 0.935 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.096 4.096 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.393 0.607 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.266 0.734 39 H 0.082 0.918 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.393 7.707 -10.509 27.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.099 0.901 4 C -0.162 4.162 5 C -0.136 4.136 6 C -0.023 4.023 7 C -0.213 4.213 8 C 0.343 3.657 9 O -0.407 6.407 10 O -0.241 6.241 11 C -0.027 4.027 12 C 0.282 3.718 13 O -0.412 6.412 14 N -0.357 5.357 15 C 0.130 3.870 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.141 4.141 19 N -0.522 5.522 20 Si 0.733 3.267 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.133 4.133 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.162 0.838 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.226 0.774 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.390 7.706 -9.812 27.396 hybrid contribution 1.241 -0.389 -0.850 1.553 sum -23.149 7.317 -10.662 26.516 Atomic orbital electron populations 1.21763 0.94399 1.02052 1.01931 1.22147 0.95787 0.99320 0.94383 0.90092 1.22549 0.95933 0.99927 0.97808 1.21479 0.97351 1.03492 0.91245 1.23113 0.94005 0.88822 0.96388 1.21196 0.89717 1.09396 1.00975 1.21464 0.85075 0.74210 0.84995 1.90826 1.83891 1.50237 1.15780 1.86656 1.20324 1.77539 1.39566 1.22826 0.82285 1.02319 0.95306 1.19910 0.83356 0.79160 0.89343 1.90706 1.79438 1.52392 1.18635 1.46362 1.10989 1.66573 1.11815 1.19179 0.84578 0.96759 0.86447 1.21254 0.95780 1.47797 0.93455 0.91702 1.24961 0.99199 0.95074 0.94822 1.69983 1.31075 1.47121 1.04006 0.86331 0.82696 0.78247 0.79454 1.19611 1.20772 1.20769 1.21696 0.92168 1.00539 0.98916 0.92433 0.92463 0.92375 0.91173 0.91104 0.89335 0.89273 0.83780 0.88593 0.88597 0.77436 0.95254 0.95249 0.92430 0.89926 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 9.29 37.16 0.35 -0.32 16 2 C -0.10 -0.57 3.53 -88.57 -0.31 -0.88 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -0.81 6.31 -25.01 -0.16 -0.97 16 5 C -0.10 -0.90 4.84 -26.65 -0.13 -1.02 16 6 C -0.02 -0.21 6.16 -100.02 -0.62 -0.82 16 7 C -0.19 -2.16 10.06 -37.85 -0.38 -2.54 16 8 C 0.50 7.13 7.91 34.26 0.27 7.40 16 9 O -0.52 -7.86 13.90 -19.30 -0.27 -8.13 16 10 O -0.33 -5.45 9.77 -47.43 -0.46 -5.91 16 11 C 0.05 0.80 5.96 36.01 0.21 1.01 16 12 C 0.50 10.28 7.91 -10.99 -0.09 10.19 16 13 O -0.53 -13.38 16.50 -14.10 -0.23 -13.61 16 14 N -0.71 -14.88 5.55 -61.47 -0.34 -15.22 16 15 C 0.25 6.63 5.43 -5.19 -0.03 6.60 16 16 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 17 H 0.06 1.63 7.60 -52.48 -0.40 1.24 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.98 13.29 55.43 0.74 -25.24 16 20 Si 0.91 20.79 29.54 -169.99 -5.02 15.76 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.10 -0.62 6.10 -26.32 -0.16 -0.78 16 25 H 0.06 0.25 8.08 -51.93 -0.42 -0.17 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.42 8.04 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.89 7.70 -51.93 -0.40 0.49 16 31 H 0.09 0.91 7.66 -51.93 -0.40 0.51 16 32 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.52 8.00 -51.93 -0.42 0.10 16 LS Contribution 343.13 15.07 5.17 5.17 Total: -1.00 -33.24 343.13 -8.03 -41.27 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.15 Total: 1.43 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.46 Total: 4.49 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.40 Total: -40.46 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.96 Total: -27.66 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.24 -8.03 -41.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754196613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.752 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds