Wall clock time and date at job start Tue Mar 31 2020 07:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.74017 * 2 1 4 4 C 1.54986 * 110.83031 * 236.56732 * 2 1 3 5 5 C 1.54281 * 103.88177 * 204.62771 * 4 2 1 6 6 C 1.51839 * 106.65649 * 23.16485 * 5 4 2 7 7 C 1.33073 * 126.29946 * 180.36799 * 6 5 4 8 8 C 1.46952 * 120.00300 * 359.95401 * 7 6 5 9 9 O 1.21543 * 119.99661 * 0.02562 * 8 7 6 10 10 O 1.34795 * 120.00608 * 180.02562 * 8 7 6 11 11 C 1.45196 * 117.00166 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47160 * 179.97438 * 11 10 8 13 13 O 1.21279 * 119.99851 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00344 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00398 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47125 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00158 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99907 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99908 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00064 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47130 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47037 * 119.99727 * 20 18 16 23 23 H 1.48499 * 109.47613 * 240.00280 * 20 18 16 24 24 C 1.51845 * 107.35808 * 0.33029 * 6 5 4 25 25 H 1.08997 * 109.47043 * 183.43134 * 1 2 3 26 26 H 1.08998 * 109.47189 * 303.42969 * 1 2 3 27 27 H 1.08997 * 109.47176 * 63.43179 * 1 2 3 28 28 H 1.09002 * 110.57212 * 323.27252 * 4 2 1 29 29 H 1.09003 * 110.56596 * 85.99305 * 4 2 1 30 30 H 1.09002 * 109.98199 * 142.54125 * 5 4 2 31 31 H 1.08994 * 109.98614 * 263.85070 * 5 4 2 32 32 H 1.08002 * 120.00122 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.46670 * 299.99002 * 11 10 8 34 34 H 1.08994 * 109.47442 * 59.99576 * 11 10 8 35 35 H 0.97002 * 119.99993 * 359.97438 * 14 12 11 36 36 H 1.08993 * 109.46782 * 300.00198 * 15 14 12 37 37 H 1.09000 * 109.46611 * 60.00467 * 15 14 12 38 38 H 0.96993 * 120.00232 * 180.02562 * 19 18 16 39 39 H 1.08997 * 110.44189 * 217.48357 * 24 6 5 40 40 H 1.09006 * 110.44399 * 94.96423 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9160 1.0193 0.0000 4 6 2.0812 -0.7981 -1.2089 5 6 3.4853 -1.2428 -0.7497 6 6 3.4695 -1.2350 0.7686 7 6 4.4855 -1.5487 1.5687 8 6 5.7764 -1.9514 0.9936 9 8 5.9163 -1.9975 -0.2129 10 8 6.8055 -2.2697 1.8040 11 6 8.0510 -2.6578 1.1665 12 6 9.0784 -2.9745 2.2225 13 8 8.7896 -2.8817 3.3967 14 7 10.3183 -3.3608 1.8621 15 6 11.3173 -3.6681 2.8887 16 6 12.6099 -4.0710 2.2270 17 1 12.6802 -4.0961 1.1496 18 6 13.7026 -4.4087 2.9972 19 7 13.6166 -4.3795 4.3092 20 14 15.3046 -4.9088 2.1771 21 1 15.1414 -4.8613 0.7018 22 1 16.3830 -3.9731 2.5857 23 1 15.6633 -6.2889 2.5917 24 6 2.0809 -0.8023 1.2049 25 1 -0.3633 -1.0258 0.0615 26 1 -0.3633 0.5661 0.8576 27 1 -0.3633 0.4596 -0.9191 28 1 1.4529 -1.6649 -1.4141 29 1 2.1507 -0.1596 -2.0896 30 1 3.6966 -2.2471 -1.1170 31 1 4.2365 -0.5449 -1.1191 32 1 4.3613 -1.5076 2.6408 33 1 7.8828 -3.5388 0.5470 34 1 8.4110 -1.8390 0.5438 35 1 10.5492 -3.4354 0.9229 36 1 11.4855 -2.7866 3.5073 37 1 10.9574 -4.4864 3.5123 38 1 14.3853 -4.6167 4.8510 39 1 2.1401 -0.1681 2.0895 40 1 1.4548 -1.6729 1.4009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754196613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:41 Heat of formation + Delta-G solvation = -150.577426 kcal Electronic energy + Delta-G solvation = -20772.450057 eV Core-core repulsion = 17357.846137 eV Total energy + Delta-G solvation = -3414.603920 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66091 -40.45207 -39.40477 -37.43381 -36.19923 -34.43391 -33.83382 -31.13232 -30.61833 -28.87718 -27.96996 -25.25828 -24.53278 -22.73920 -21.66534 -21.03545 -19.84595 -18.99393 -18.79011 -17.78465 -17.70209 -17.11565 -16.92290 -16.37370 -16.14846 -15.77542 -15.56792 -14.78347 -14.62747 -14.42142 -14.22517 -14.09334 -13.73498 -13.68003 -13.53509 -12.92412 -12.79382 -12.76272 -12.68715 -12.33302 -12.23336 -11.88889 -11.85501 -11.67514 -11.48213 -11.44012 -11.23929 -10.92264 -10.84271 -10.27617 -9.95175 -8.30756 -6.47495 0.06595 1.30564 1.44384 1.44530 1.52707 1.58472 1.87089 2.33734 2.57854 3.04451 3.36467 3.61602 3.67946 3.88709 4.00825 4.02730 4.04922 4.11478 4.36906 4.42279 4.58160 4.69213 4.79456 4.91708 4.98380 5.04668 5.06956 5.10748 5.17567 5.20163 5.26262 5.32307 5.37335 5.40427 5.46748 5.54352 5.61834 5.80714 6.60594 6.63874 6.77670 7.18948 7.33955 8.81675 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.064002 B = 0.002267 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.382238 B =12349.298005 C =12725.088319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.120 4.120 5 C -0.104 4.104 6 C -0.004 4.004 7 C -0.220 4.220 8 C 0.494 3.506 9 O -0.530 6.530 10 O -0.349 6.349 11 C 0.062 3.938 12 C 0.499 3.501 13 O -0.585 6.585 14 N -0.698 5.698 15 C 0.266 3.734 16 C -0.557 4.557 17 H 0.086 0.914 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.987 3.013 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.095 4.095 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.413 0.587 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.269 0.731 39 H 0.095 0.905 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.464 7.987 -12.706 29.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.157 4.157 5 C -0.141 4.141 6 C -0.004 4.004 7 C -0.239 4.239 8 C 0.342 3.658 9 O -0.423 6.423 10 O -0.265 6.265 11 C -0.015 4.015 12 C 0.285 3.715 13 O -0.465 6.465 14 N -0.350 5.350 15 C 0.143 3.857 16 C -0.595 4.595 17 H 0.104 0.896 18 C -0.196 4.196 19 N -0.568 5.568 20 Si 0.810 3.190 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.132 4.132 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.173 0.827 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.249 0.751 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -25.489 7.994 -12.067 29.312 hybrid contribution 1.459 -0.439 -0.184 1.534 sum -24.030 7.554 -12.251 28.011 Atomic orbital electron populations 1.21743 0.93160 1.02506 1.02471 1.22152 0.96735 0.98998 0.93443 0.90114 1.22540 0.94246 1.00503 0.98405 1.21529 0.98798 1.02524 0.91230 1.23476 0.94711 0.85815 0.96431 1.21243 0.88827 1.11987 1.01817 1.22003 0.85262 0.73694 0.84820 1.90811 1.84076 1.51216 1.16165 1.86650 1.20912 1.78141 1.40824 1.22692 0.81156 1.04458 0.93174 1.20710 0.83656 0.77399 0.89723 1.90680 1.80312 1.54274 1.21255 1.46043 1.10587 1.66530 1.11825 1.18645 0.86129 0.93808 0.87089 1.21646 0.95775 1.47487 0.94563 0.89556 1.26075 1.03477 0.94754 0.95335 1.70138 1.32505 1.48218 1.05987 0.85079 0.77183 0.77617 0.79131 1.17637 1.20468 1.20462 1.21825 0.90279 1.01377 0.99689 0.92037 0.91880 0.91943 0.90313 0.90418 0.90515 0.90567 0.82703 0.85950 0.85972 0.75101 0.98961 0.98954 0.92177 0.88699 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.29 71.98 0.67 -0.23 16 2 C -0.09 -0.86 3.53 -9.47 -0.03 -0.90 16 3 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.12 -1.31 6.31 31.71 0.20 -1.11 16 5 C -0.10 -1.77 4.84 30.65 0.15 -1.63 16 6 C 0.00 -0.06 6.16 -16.88 -0.10 -0.16 16 7 C -0.22 -4.75 10.06 23.40 0.24 -4.52 16 8 C 0.49 14.01 7.91 70.10 0.55 14.56 16 9 O -0.53 -15.81 13.90 19.70 0.27 -15.54 16 10 O -0.35 -11.65 9.77 -50.67 -0.49 -12.14 16 11 C 0.06 1.91 5.96 71.24 0.42 2.33 16 12 C 0.50 20.82 7.91 87.66 0.69 21.52 16 13 O -0.58 -30.45 16.50 15.77 0.26 -30.19 16 14 N -0.70 -29.62 5.55 -466.79 -2.59 -32.21 16 15 C 0.27 14.58 5.43 85.63 0.46 15.05 16 16 C -0.56 -30.14 9.28 25.60 0.24 -29.90 16 17 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 18 C 0.00 0.18 5.46 84.66 0.46 0.65 16 19 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 20 Si 0.99 42.20 29.54 68.60 2.03 44.22 16 21 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 C -0.10 -0.99 6.10 30.86 0.19 -0.80 16 25 H 0.06 0.36 8.08 -2.39 -0.02 0.34 16 26 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 28 H 0.08 0.75 8.04 -2.39 -0.02 0.73 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.51 7.70 -2.39 -0.02 1.49 16 31 H 0.08 1.52 7.66 -2.39 -0.02 1.50 16 32 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 33 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.12 3.14 8.14 -2.39 -0.02 3.13 16 35 H 0.41 14.10 8.32 -92.71 -0.77 13.33 16 36 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.11 0.88 8.00 -2.38 -0.02 0.86 16 Total: -1.00 -74.31 343.13 4.16 -70.15 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.26 Total: 16.53 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 4.14 Total: 14.86 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -2.30 Total: -87.89 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: 0.04 Total: -57.87 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -74.31 4.16 -70.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754196613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.432 kcal (2) G-P(sol) polarization free energy of solvation -74.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds