Wall clock time and date at job start Tue Mar 31 2020 07:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.50827 * 2 1 4 4 C 1.54981 * 110.56915 * 122.75551 * 2 1 3 5 5 C 1.54883 * 102.33683 * 155.65091 * 4 2 1 6 6 C 1.51843 * 104.43216 * 322.37376 * 5 4 2 7 7 C 1.33086 * 126.34494 * 203.76501 * 6 5 4 8 8 C 1.46956 * 119.99489 * 0.02774 * 7 6 5 9 9 O 1.21530 * 120.00368 * 359.72432 * 8 7 6 10 10 O 1.34799 * 119.99652 * 180.02562 * 8 7 6 11 11 C 1.45198 * 117.00102 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47256 * 179.97438 * 11 10 8 13 13 O 1.21279 * 120.00119 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99770 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99712 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46902 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00334 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99879 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00143 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00053 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47165 * 90.00376 * 20 18 16 22 22 H 1.48505 * 109.47255 * 210.00269 * 20 18 16 23 23 H 1.48504 * 109.47169 * 330.00315 * 20 18 16 24 24 C 1.51450 * 107.31580 * 24.03000 * 6 5 4 25 25 H 1.09002 * 109.47552 * 297.24836 * 1 2 3 26 26 H 1.08998 * 109.47496 * 57.24580 * 1 2 3 27 27 H 1.09003 * 109.47549 * 177.24212 * 1 2 3 28 28 H 1.09000 * 110.83368 * 37.43751 * 4 2 1 29 29 H 1.09000 * 110.83254 * 273.85998 * 4 2 1 30 30 H 1.08997 * 110.44684 * 203.63700 * 5 4 2 31 31 H 1.09003 * 110.55135 * 81.16367 * 5 4 2 32 32 H 1.07999 * 120.00275 * 180.02562 * 7 6 5 33 33 H 1.08997 * 109.47371 * 299.99798 * 11 10 8 34 34 H 1.09006 * 109.47027 * 60.00073 * 11 10 8 35 35 H 0.96998 * 120.00652 * 359.97438 * 14 12 11 36 36 H 1.09003 * 109.46921 * 299.99287 * 15 14 12 37 37 H 1.08995 * 109.47494 * 60.00132 * 15 14 12 38 38 H 0.96996 * 120.00167 * 179.97438 * 19 18 16 39 39 H 1.09008 * 109.98149 * 118.74940 * 24 6 5 40 40 H 1.09000 * 109.98394 * 240.05318 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9118 1.0209 0.0000 4 6 2.0744 -0.7851 1.2203 5 6 3.4813 -1.2153 0.7360 6 6 3.2910 -1.5455 -0.7338 7 6 4.0544 -2.3531 -1.4660 8 6 5.2106 -3.0242 -0.8557 9 8 5.4726 -2.8378 0.3163 10 8 5.9841 -3.8419 -1.5974 11 6 7.1094 -4.4705 -0.9290 12 6 7.8524 -5.3423 -1.9083 13 8 7.4713 -5.4254 -3.0566 14 7 8.9403 -6.0297 -1.5079 15 6 9.6628 -6.8768 -2.4600 16 6 10.8300 -7.5302 -1.7658 17 1 11.0153 -7.3338 -0.7201 18 6 11.6619 -8.3780 -2.4660 19 7 12.6808 -8.9479 -1.8603 20 14 11.3418 -8.7172 -4.2749 21 1 12.0706 -7.7219 -5.1016 22 1 11.8149 -10.0835 -4.6136 23 1 9.8856 -8.6159 -4.5474 24 6 2.0755 -0.7802 -1.2140 25 1 -0.3634 0.4705 0.9136 26 1 -0.3634 0.5560 -0.8642 27 1 -0.3634 -1.0265 -0.0494 28 1 1.4533 -1.6560 1.4295 29 1 2.1464 -0.1397 2.0957 30 1 3.8197 -2.0952 1.2831 31 1 4.1930 -0.3980 0.8536 32 1 3.8242 -2.5154 -2.5086 33 1 7.7799 -3.7015 -0.5453 34 1 6.7461 -5.0811 -0.1024 35 1 9.2454 -5.9631 -0.5895 36 1 8.9922 -7.6456 -2.8440 37 1 10.0266 -6.2662 -3.2863 38 1 13.2658 -9.5446 -2.3528 39 1 2.3602 -0.0883 -2.0068 40 1 1.3185 -1.4744 -1.5790 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754196615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:45 Heat of formation + Delta-G solvation = -124.773345 kcal Electronic energy + Delta-G solvation = -20841.169368 eV Core-core repulsion = 17427.684397 eV Total energy + Delta-G solvation = -3413.484971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.56561 -39.13756 -38.55953 -36.31165 -34.36157 -33.16892 -32.42563 -30.34349 -29.52413 -27.96633 -26.92263 -24.47954 -22.39568 -21.65209 -20.49750 -20.11126 -18.91887 -17.76033 -17.41765 -16.65074 -16.48355 -16.01373 -15.40789 -15.19210 -14.85801 -14.68893 -14.09638 -13.99910 -13.58476 -13.35773 -13.11378 -13.04362 -12.53205 -12.45034 -12.35933 -12.11645 -12.01990 -11.58699 -11.31746 -11.19117 -11.06601 -10.97004 -10.81550 -10.68486 -10.25952 -9.99845 -9.53961 -9.50533 -9.32555 -8.81516 -8.25939 -6.23987 -4.27007 0.91515 2.43854 2.82222 3.05521 3.25710 3.32469 3.40563 3.81717 4.10878 4.21473 4.31271 4.44043 4.63687 4.76795 5.00312 5.01127 5.02232 5.10744 5.11807 5.14393 5.20793 5.24693 5.25537 5.37161 5.45116 5.60971 5.65679 5.72487 5.77978 5.94885 6.02139 6.09775 6.41913 6.74056 7.01495 7.10766 7.32236 7.71239 8.05923 8.42015 8.68925 8.80883 9.35133 10.87760 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.058063 B = 0.002386 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.119349 B =11730.642110 C =12124.608174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.079 0.921 4 C -0.123 4.123 5 C -0.109 4.109 6 C -0.020 4.020 7 C -0.196 4.196 8 C 0.498 3.502 9 O -0.514 6.514 10 O -0.327 6.327 11 C 0.051 3.949 12 C 0.502 3.498 13 O -0.537 6.537 14 N -0.700 5.700 15 C 0.222 3.778 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.891 5.891 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.099 4.099 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.399 0.601 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.268 0.732 39 H 0.086 0.914 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.735 18.020 4.967 29.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.160 4.160 5 C -0.146 4.146 6 C -0.020 4.020 7 C -0.215 4.215 8 C 0.344 3.656 9 O -0.406 6.406 10 O -0.242 6.242 11 C -0.027 4.027 12 C 0.285 3.715 13 O -0.414 6.414 14 N -0.350 5.350 15 C 0.100 3.900 16 C -0.584 4.584 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.528 5.528 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.136 4.136 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.233 0.767 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.725 17.838 4.433 29.228 hybrid contribution 0.340 -0.301 -0.400 0.605 sum -22.384 17.537 4.033 28.720 Atomic orbital electron populations 1.21809 0.94474 1.02070 1.01894 1.22007 0.95861 0.99395 0.94446 0.90262 1.22673 0.95856 0.99974 0.97518 1.21832 0.97296 1.03349 0.92100 1.23041 0.92686 0.90143 0.96176 1.21149 0.95951 1.02850 1.01550 1.21453 0.82720 0.76793 0.84590 1.90803 1.70700 1.61827 1.17242 1.86648 1.38554 1.56487 1.42494 1.22786 0.87418 0.97290 0.95201 1.19950 0.81745 0.81197 0.88599 1.90698 1.66959 1.64493 1.19276 1.46063 1.27391 1.46172 1.15421 1.19552 0.91853 0.89452 0.89119 1.21072 1.10016 1.28237 0.99048 0.90118 1.24794 0.94376 0.94786 0.98652 1.69877 1.15763 1.30134 1.37008 0.86812 0.79822 0.78029 0.85002 1.19787 1.20841 1.18466 1.21465 0.94819 0.98593 0.98690 0.92371 0.92528 0.92417 0.91025 0.90896 0.88250 0.89315 0.83852 0.88345 0.88364 0.76711 0.95426 0.95882 0.92193 0.89525 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.15 37.15 0.34 -0.33 16 2 C -0.10 -0.55 3.48 -88.91 -0.31 -0.85 16 3 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.12 -0.79 6.38 -24.69 -0.16 -0.95 16 5 C -0.11 -0.96 5.41 -26.33 -0.14 -1.10 16 6 C -0.02 -0.18 6.15 -100.21 -0.62 -0.79 16 7 C -0.20 -2.10 10.06 -37.84 -0.38 -2.48 16 8 C 0.50 6.89 7.90 34.26 0.27 7.16 16 9 O -0.51 -7.60 13.55 -19.29 -0.26 -7.87 16 10 O -0.33 -5.22 9.77 -47.45 -0.46 -5.69 16 11 C 0.05 0.77 5.96 36.01 0.21 0.98 16 12 C 0.50 9.77 7.91 -10.98 -0.09 9.69 16 13 O -0.54 -12.63 16.50 -14.10 -0.23 -12.87 16 14 N -0.70 -14.09 5.55 -61.47 -0.34 -14.43 16 15 C 0.22 5.43 4.50 -5.19 -0.02 5.41 16 16 C -0.55 -14.87 9.83 -34.44 -0.34 -15.21 16 17 H 0.08 2.28 7.84 -52.49 -0.41 1.86 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 20 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 24 C -0.10 -0.61 6.21 -26.84 -0.17 -0.78 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.27 8.08 -51.93 -0.42 -0.15 16 28 H 0.07 0.46 8.05 -51.93 -0.42 0.05 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 1.07 6.27 -51.93 -0.33 0.75 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.40 6.92 8.32 -40.82 -0.34 6.58 16 36 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 37 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.09 0.49 7.79 -51.93 -0.40 0.08 16 LS Contribution 338.57 15.07 5.10 5.10 Total: -1.00 -33.13 338.57 -7.64 -40.77 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.06 Total: 1.02 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.49 Total: 2.83 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.43 Total: -39.97 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.96 Total: -26.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.13 -7.64 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754196615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.000 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds