Wall clock time and date at job start Tue Mar 31 2020 07:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.50354 * 2 1 4 4 C 1.54982 * 110.56662 * 237.08928 * 2 1 3 5 5 C 1.55133 * 102.22098 * 204.16279 * 4 2 1 6 6 C 1.51844 * 104.31724 * 37.93493 * 5 4 2 7 7 C 1.33081 * 126.34419 * 156.13087 * 6 5 4 8 8 C 1.46951 * 120.00223 * 179.68674 * 7 6 5 9 9 O 1.21533 * 119.99898 * 0.02562 * 8 7 6 10 10 O 1.34800 * 119.99787 * 180.27429 * 8 7 6 11 11 C 1.45201 * 116.99753 * 179.72393 * 10 8 7 12 12 C 1.50706 * 109.47064 * 180.02562 * 11 10 8 13 13 O 1.21283 * 119.99923 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00023 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00131 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47075 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99859 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99872 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99892 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99801 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47439 * 90.00117 * 20 18 16 22 22 H 1.48507 * 109.46851 * 209.99863 * 20 18 16 23 23 H 1.48500 * 109.47597 * 329.99545 * 20 18 16 24 24 C 1.51450 * 107.31856 * 335.86670 * 6 5 4 25 25 H 1.09004 * 109.47191 * 298.69820 * 1 2 3 26 26 H 1.08998 * 109.47360 * 58.69733 * 1 2 3 27 27 H 1.09002 * 109.47076 * 178.70162 * 1 2 3 28 28 H 1.09000 * 110.83382 * 322.55124 * 4 2 1 29 29 H 1.08995 * 110.83545 * 85.94015 * 4 2 1 30 30 H 1.09001 * 110.58461 * 279.19284 * 5 4 2 31 31 H 1.09005 * 110.41170 * 156.59059 * 5 4 2 32 32 H 1.08002 * 120.00074 * 359.69100 * 7 6 5 33 33 H 1.08997 * 109.47380 * 299.99945 * 11 10 8 34 34 H 1.08997 * 109.46942 * 60.00359 * 11 10 8 35 35 H 0.97003 * 119.99738 * 359.97438 * 14 12 11 36 36 H 1.09003 * 109.46857 * 300.00164 * 15 14 12 37 37 H 1.08997 * 109.47187 * 59.99880 * 15 14 12 38 38 H 0.97005 * 119.99851 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.98412 * 119.94071 * 24 6 5 40 40 H 1.08991 * 109.98891 * 241.21417 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9118 1.0210 0.0000 4 6 2.0745 -0.7884 -1.2182 5 6 3.4850 -1.2124 -0.7311 6 6 3.2912 -1.5432 0.7381 7 6 4.0545 -2.3489 1.4725 8 6 3.7413 -2.5657 2.8918 9 8 2.7849 -2.0096 3.3948 10 8 4.5178 -3.3774 3.6370 11 6 4.1525 -3.5401 5.0328 12 6 5.1272 -4.4750 5.7015 13 8 6.0396 -4.9571 5.0642 14 7 4.9843 -4.7762 7.0073 15 6 5.9321 -5.6846 7.6575 16 6 5.5528 -5.8536 9.1062 17 1 4.6921 -5.3358 9.5030 18 6 6.3047 -6.6693 9.9250 19 7 5.9740 -6.8163 11.1894 20 14 7.7938 -7.5643 9.2388 21 1 8.9998 -6.7123 9.3970 22 1 7.9881 -8.8389 9.9757 23 1 7.5774 -7.8533 7.7984 24 6 2.0721 -0.7814 1.2148 25 1 -0.3634 0.4935 0.9015 26 1 -0.3634 0.5339 -0.8780 27 1 -0.3633 -1.0274 -0.0233 28 1 1.4534 -1.6600 -1.4248 29 1 2.1431 -0.1463 -2.0963 30 1 4.1930 -0.3917 -0.8464 31 1 3.8275 -2.0914 -1.2773 32 1 4.9043 -2.8433 1.0254 33 1 4.1793 -2.5710 5.5308 34 1 3.1467 -3.9550 5.0991 35 1 4.2543 -4.3910 7.5169 36 1 5.9065 -6.6538 7.1594 37 1 6.9375 -5.2687 7.5917 38 1 6.5027 -7.3905 11.7654 39 1 1.3159 -1.4778 1.5773 40 1 2.3522 -0.0894 2.0088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754196616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:49 Heat of formation + Delta-G solvation = -125.969950 kcal Electronic energy + Delta-G solvation = -20905.360749 eV Core-core repulsion = 17491.823889 eV Total energy + Delta-G solvation = -3413.536860 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.55390 -39.13040 -38.54506 -36.28150 -34.36005 -33.19837 -32.42551 -30.40567 -29.49627 -27.74539 -26.88930 -24.75302 -22.34281 -21.51905 -20.53913 -20.10835 -18.90003 -17.74394 -17.41708 -16.61952 -16.37843 -16.14046 -15.54596 -15.20809 -14.75080 -14.58905 -14.11566 -14.04369 -13.45668 -13.36266 -13.14851 -12.86087 -12.61497 -12.49544 -12.35659 -12.05431 -11.98756 -11.74993 -11.28417 -11.07102 -11.03672 -10.95750 -10.81174 -10.67836 -10.38370 -9.99780 -9.53917 -9.51096 -9.32472 -8.81491 -8.25838 -6.23970 -4.26931 0.92052 2.44686 2.82578 3.05637 3.25752 3.32507 3.40622 3.82330 4.09462 4.20076 4.31306 4.48092 4.65545 4.78644 4.93613 4.98614 5.05981 5.10790 5.12398 5.15623 5.20925 5.25614 5.34808 5.43152 5.45960 5.57196 5.60958 5.73451 5.83546 5.97552 6.03073 6.11217 6.37375 6.74106 7.01557 7.10870 7.32294 7.71405 8.05982 8.42093 8.69006 8.80972 9.35181 10.87785 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.049668 B = 0.002467 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.602481 B =11348.474922 C =11828.032903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.078 0.922 4 C -0.120 4.120 5 C -0.101 4.101 6 C -0.021 4.021 7 C -0.195 4.195 8 C 0.496 3.504 9 O -0.514 6.514 10 O -0.327 6.327 11 C 0.051 3.949 12 C 0.502 3.498 13 O -0.537 6.537 14 N -0.700 5.700 15 C 0.222 3.778 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.891 5.891 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.096 4.096 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.399 0.601 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.268 0.732 39 H 0.091 0.909 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.974 13.699 -24.123 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.096 0.904 4 C -0.157 4.157 5 C -0.138 4.138 6 C -0.022 4.022 7 C -0.214 4.214 8 C 0.343 3.657 9 O -0.405 6.405 10 O -0.242 6.242 11 C -0.027 4.027 12 C 0.285 3.715 13 O -0.414 6.414 14 N -0.350 5.350 15 C 0.100 3.900 16 C -0.583 4.583 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.528 5.528 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.133 4.133 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.162 0.838 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.233 0.767 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.525 13.382 -24.196 28.935 hybrid contribution 0.397 -0.337 0.333 0.618 sum -8.129 13.045 -23.863 28.385 Atomic orbital electron populations 1.21795 0.94530 1.02046 1.01821 1.22077 0.96055 0.99333 0.94600 0.90403 1.22666 0.95120 1.00224 0.97728 1.21666 0.98542 1.02355 0.91218 1.23047 0.93142 0.90396 0.95603 1.21182 1.04337 1.05715 0.90195 1.21460 0.80102 0.76045 0.88130 1.90833 1.28525 1.47390 1.73790 1.86648 1.53522 1.61618 1.22418 1.22782 0.99299 1.01207 0.79392 1.19952 0.85898 0.82508 0.83135 1.90698 1.33404 1.53282 1.64041 1.46063 1.32360 1.48127 1.08494 1.19552 0.88522 0.88711 0.93187 1.21069 1.15292 1.30213 0.91770 0.90126 1.24795 0.97482 0.95751 0.94594 1.69879 1.39764 1.38130 1.05011 0.86811 0.83128 0.79616 0.80105 1.19788 1.20845 1.18462 1.21517 0.95231 0.98828 0.97720 0.92391 0.92579 0.92475 0.90831 0.90810 0.88971 0.89909 0.83803 0.88380 0.88373 0.76713 0.95427 0.95891 0.92196 0.89074 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.12 37.16 0.34 -0.52 16 2 C -0.10 -0.65 3.48 -88.90 -0.31 -0.96 16 3 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.12 -0.65 6.39 -24.56 -0.16 -0.80 16 5 C -0.10 -0.60 6.66 -26.19 -0.17 -0.78 16 6 C -0.02 -0.19 6.15 -100.21 -0.62 -0.80 16 7 C -0.20 -2.09 10.06 -37.85 -0.38 -2.47 16 8 C 0.50 6.89 7.90 34.26 0.27 7.16 16 9 O -0.51 -7.64 13.90 -19.29 -0.27 -7.91 16 10 O -0.33 -5.24 9.77 -47.45 -0.46 -5.70 16 11 C 0.05 0.77 5.96 36.01 0.21 0.98 16 12 C 0.50 9.78 7.91 -10.98 -0.09 9.70 16 13 O -0.54 -12.64 16.50 -14.10 -0.23 -12.87 16 14 N -0.70 -14.09 5.55 -61.47 -0.34 -14.43 16 15 C 0.22 5.43 4.50 -5.19 -0.02 5.41 16 16 C -0.55 -14.86 9.83 -34.44 -0.34 -15.20 16 17 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.33 13.96 55.43 0.77 -25.55 16 20 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 24 C -0.10 -0.85 4.40 -26.84 -0.12 -0.97 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.40 8.05 -51.93 -0.42 -0.01 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.40 6.92 8.32 -40.82 -0.34 6.58 16 36 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 37 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.09 0.92 7.35 -51.93 -0.38 0.54 16 40 H 0.09 0.88 7.69 -51.93 -0.40 0.48 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -33.20 339.37 -7.68 -40.88 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.11 Total: 0.99 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.48 Total: 2.83 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.43 Total: -39.99 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.96 Total: -26.49 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.20 -7.68 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754196616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.093 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds