Wall clock time and date at job start Tue Mar 31 2020 05:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39923 * 120.46903 * 2 1 4 4 N 1.31703 * 119.83266 * 179.68868 * 3 2 1 5 5 C 1.33472 * 120.83140 * 0.61600 * 4 3 2 6 6 S 1.71202 * 119.51181 * 179.68078 * 5 4 3 7 7 N 1.34613 * 120.97040 * 359.66511 * 5 4 3 8 8 C 1.46499 * 119.93892 * 180.02562 * 7 5 4 9 9 N 1.46903 * 109.46761 * 284.97463 * 8 7 5 10 10 C 1.46901 * 110.99973 * 170.00093 * 9 8 7 11 11 C 1.50701 * 109.46777 * 284.08568 * 10 9 8 12 12 H 1.07997 * 120.00350 * 4.75536 * 11 10 9 13 13 C 1.37883 * 120.00022 * 184.75854 * 11 10 9 14 14 N 1.31518 * 119.99438 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00471 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46757 * 59.99703 * 15 13 11 17 17 H 1.48495 * 109.47141 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46722 * 300.00381 * 15 13 11 19 19 C 1.46901 * 110.99807 * 293.95182 * 9 8 7 20 20 C 1.53004 * 109.46841 * 169.35721 * 19 9 8 21 21 C 1.53001 * 109.47204 * 289.35784 * 19 9 8 22 22 C 1.35942 * 120.12281 * 0.02562 * 7 5 4 23 23 H 1.09002 * 109.46826 * 269.72063 * 1 2 3 24 24 H 1.08995 * 109.47094 * 29.72114 * 1 2 3 25 25 H 1.08995 * 109.46969 * 149.72472 * 1 2 3 26 26 H 1.08009 * 120.07756 * 359.97396 * 3 2 1 27 27 H 1.09000 * 109.47355 * 44.97303 * 8 7 5 28 28 H 1.08999 * 109.47168 * 164.97713 * 8 7 5 29 29 H 1.09001 * 109.47003 * 44.08223 * 10 9 8 30 30 H 1.08996 * 109.46902 * 164.08706 * 10 9 8 31 31 H 0.97005 * 119.99826 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.47159 * 49.36077 * 19 9 8 33 33 H 1.08996 * 109.46891 * 61.06938 * 20 19 9 34 34 H 1.09006 * 109.46733 * 181.06483 * 20 19 9 35 35 H 1.08995 * 109.47321 * 301.06418 * 20 19 9 36 36 H 1.09002 * 109.46812 * 60.00277 * 21 19 9 37 37 H 1.08998 * 109.46552 * 180.02562 * 21 19 9 38 38 H 1.08998 * 109.47150 * 299.99688 * 21 19 9 39 39 H 1.08001 * 120.41148 * 179.97438 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.2060 0.0000 4 7 3.5334 1.1914 0.0062 5 6 4.2048 0.0378 0.0002 6 16 5.9167 0.0583 0.0003 7 7 3.5556 -1.1414 -0.0056 8 6 4.3151 -2.3942 -0.0115 9 7 4.8752 -2.6208 -1.3506 10 6 5.8333 -3.7343 -1.3390 11 6 7.1279 -3.2765 -0.7183 12 1 7.2043 -2.2845 -0.2981 13 6 8.2151 -4.1240 -0.6868 14 7 8.1218 -5.3322 -1.1981 15 14 9.8201 -3.5564 0.0819 16 1 9.5914 -3.2131 1.5085 17 1 10.8252 -4.6457 -0.0096 18 1 10.3192 -2.3593 -0.6414 19 6 3.8094 -2.8536 -2.3344 20 6 4.4015 -2.8208 -3.7449 21 6 3.1709 -4.2207 -2.0809 22 6 2.1965 -1.1721 -0.0059 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 0.8924 -0.5095 25 1 -0.3633 -0.8875 -0.5181 26 1 1.6854 2.1465 -0.0004 27 1 5.1251 -2.3315 0.7152 28 1 3.6548 -3.2207 0.2507 29 1 5.4235 -4.5601 -0.7573 30 1 6.0175 -4.0658 -2.3608 31 1 8.8867 -5.9284 -1.1763 32 1 3.0518 -2.0756 -2.2403 33 1 5.1456 -3.6109 -3.8450 34 1 3.6075 -2.9747 -4.4758 35 1 4.8728 -1.8536 -3.9188 36 1 2.7492 -4.2439 -1.0760 37 1 2.3805 -4.3935 -2.8112 38 1 3.9286 -4.9986 -2.1751 39 1 1.6709 -2.1155 -0.0110 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758305090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:19 Heat of formation + Delta-G solvation = 74.838016 kcal Electronic energy + Delta-G solvation = -20681.986072 eV Core-core repulsion = 17752.202521 eV Total energy + Delta-G solvation = -2929.783551 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60411 -38.09993 -35.27506 -34.10639 -32.73177 -30.94016 -28.11227 -27.65018 -26.79123 -25.75184 -24.34692 -23.03614 -22.46549 -19.19566 -18.34624 -18.12231 -16.82047 -16.38572 -15.87615 -14.95177 -14.69947 -14.61839 -14.12248 -14.08388 -13.66290 -13.32227 -13.17448 -12.85843 -12.52134 -12.31581 -12.09332 -11.87201 -11.61569 -11.33871 -10.91308 -10.83397 -10.73517 -10.64127 -10.48075 -10.35032 -10.06717 -9.96127 -9.65666 -9.13333 -8.31231 -7.57200 -7.07194 -6.55235 -5.92129 -3.89644 0.29059 0.82184 2.24280 2.87400 3.17991 3.48287 3.49251 3.58927 4.01262 4.18368 4.35228 4.50830 4.57728 4.70637 4.90421 5.05642 5.19516 5.22874 5.37920 5.42816 5.45772 5.56133 5.57762 5.66262 5.84091 5.92415 6.01878 6.08758 6.25688 6.27263 6.36841 6.52653 6.71244 7.04766 7.17887 7.58301 7.88540 7.93781 8.17431 8.54691 9.30579 9.75420 11.18819 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.006290 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.690923 B = 4450.791869 C = 5390.454705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.231 4.231 3 C 0.218 3.782 4 N -0.482 5.482 5 C 0.429 3.571 6 S -0.489 6.489 7 N -0.441 5.441 8 C 0.259 3.741 9 N -0.516 5.516 10 C 0.202 3.798 11 C -0.504 4.504 12 H 0.091 0.909 13 C 0.054 3.946 14 N -0.908 5.908 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.292 1.292 18 H -0.276 1.276 19 C 0.069 3.931 20 C -0.137 4.137 21 C -0.186 4.186 22 C 0.164 3.836 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.175 0.825 27 H 0.136 0.864 28 H 0.061 0.939 29 H -0.008 1.008 30 H 0.046 0.954 31 H 0.259 0.741 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.685 5.824 1.193 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.245 4.245 3 C 0.027 3.973 4 N -0.197 5.197 5 C 0.082 3.918 6 S -0.340 6.340 7 N -0.128 5.128 8 C 0.047 3.953 9 N -0.241 5.241 10 C 0.078 3.922 11 C -0.542 4.542 12 H 0.109 0.891 13 C -0.146 4.146 14 N -0.549 5.549 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.218 1.218 18 H -0.201 1.201 19 C -0.040 4.040 20 C -0.194 4.194 21 C -0.245 4.245 22 C 0.020 3.980 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.192 0.808 27 H 0.153 0.847 28 H 0.079 0.921 29 H 0.009 0.991 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.083 6.584 1.029 19.272 hybrid contribution -1.083 -1.256 0.502 1.732 sum -19.166 5.328 1.531 19.952 Atomic orbital electron populations 1.20507 0.88289 1.03467 1.02715 1.20432 0.98835 0.92655 1.12611 1.23984 0.90759 0.98309 0.84206 1.70241 1.08108 1.24617 1.16700 1.24256 1.00134 0.81000 0.86431 1.93262 0.87068 1.93259 1.60433 1.46482 1.05524 1.11034 1.49791 1.22857 0.95883 0.79137 0.97392 1.62272 1.13265 1.46888 1.01719 1.19783 0.89181 0.84880 0.98310 1.21596 0.94761 1.01485 1.36389 0.89107 1.24947 0.98862 0.94855 0.95909 1.69953 1.31043 1.07122 1.46776 0.86581 0.83054 0.77985 0.79998 1.20304 1.21800 1.20116 1.21738 0.93141 0.94374 0.94726 1.21756 1.00428 1.03336 0.93914 1.22518 1.01509 1.00168 1.00296 1.22808 0.83992 1.00930 0.90319 0.90949 0.90721 0.91267 0.80822 0.84684 0.92115 0.99056 0.93645 0.93198 0.92880 0.91366 0.93495 0.92159 0.93757 0.92849 0.90872 0.80890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 10.04 36.01 0.36 -0.03 16 2 C -0.23 -1.92 5.87 -104.80 -0.62 -2.54 16 3 C 0.22 2.24 11.00 -16.98 -0.19 2.05 16 4 N -0.48 -7.76 10.39 -13.79 -0.14 -7.91 16 5 C 0.43 7.98 7.61 -88.22 -0.67 7.31 16 6 S -0.49 -11.70 27.34 -107.50 -2.94 -14.63 16 7 N -0.44 -6.73 2.32 -121.61 -0.28 -7.01 16 8 C 0.26 4.53 4.35 -63.31 -0.28 4.25 16 9 N -0.52 -10.34 4.05 -231.96 -0.94 -11.28 16 10 C 0.20 4.90 3.32 -4.97 -0.02 4.89 16 11 C -0.50 -14.10 8.62 -34.44 -0.30 -14.39 16 12 H 0.09 2.64 6.24 -52.49 -0.33 2.32 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.91 -26.79 13.29 55.43 0.74 -26.06 16 15 Si 0.90 23.06 29.54 -169.99 -5.02 18.04 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 18 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 19 C 0.07 1.13 2.83 -67.71 -0.19 0.94 16 20 C -0.14 -2.29 9.16 37.16 0.34 -1.95 16 21 C -0.19 -2.62 8.52 37.16 0.32 -2.31 16 22 C 0.16 1.66 8.87 -16.54 -0.15 1.51 16 23 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 25 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 26 H 0.17 1.07 8.06 -52.48 -0.42 0.64 16 27 H 0.14 2.82 6.47 -51.93 -0.34 2.49 16 28 H 0.06 0.89 6.14 -51.93 -0.32 0.57 16 29 H -0.01 -0.20 7.33 -51.93 -0.38 -0.59 16 30 H 0.05 1.19 5.89 -51.93 -0.31 0.88 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.05 0.79 6.44 -51.93 -0.33 0.46 16 33 H 0.07 1.28 6.31 -51.93 -0.33 0.95 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.04 0.55 6.60 -51.93 -0.34 0.21 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.22 6.75 -51.93 -0.35 0.87 16 39 H 0.17 1.15 7.94 -52.49 -0.42 0.74 16 LS Contribution 325.11 15.07 4.90 4.90 Total: -1.00 -35.44 325.11 -10.70 -46.14 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.53 Total: -3.38 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.48 Total: 1.19 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.63 Total: -52.25 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Atomic # 16 Polarization: -11.70 SS G_CDS: -2.94 Total: -14.63 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.44 -10.70 -46.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758305090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.977 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds