Wall clock time and date at job start Tue Mar 31 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46614 * 2 1 4 4 H 1.08997 * 109.47712 * 55.00076 * 3 2 1 5 5 C 1.50707 * 109.46696 * 174.99835 * 3 2 1 6 6 H 1.08005 * 119.99895 * 119.99946 * 5 3 2 7 7 C 1.37868 * 120.00084 * 299.99574 * 5 3 2 8 8 N 1.31515 * 120.00088 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00254 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47149 * 89.99362 * 9 7 5 11 11 H 1.48494 * 109.47060 * 209.99672 * 9 7 5 12 12 H 1.48495 * 109.46870 * 329.99883 * 9 7 5 13 13 N 1.46501 * 109.47084 * 294.99618 * 3 2 1 14 14 C 1.34775 * 119.99851 * 85.00527 * 13 3 2 15 15 O 1.21571 * 119.99762 * 359.97438 * 14 13 3 16 16 C 1.47680 * 120.00182 * 180.02562 * 14 13 3 17 17 C 1.34808 * 125.45273 * 180.02562 * 16 14 13 18 18 C 1.50706 * 126.63530 * 0.03454 * 17 16 14 19 19 C 1.51082 * 106.73330 * 179.77447 * 17 16 14 20 20 C 1.52994 * 110.10752 * 119.41418 * 19 17 16 21 21 C 1.53004 * 110.10530 * 240.97189 * 19 17 16 22 22 O 1.45453 * 106.22628 * 0.22299 * 19 17 16 23 23 C 1.34486 * 107.98130 * 359.97438 * 22 19 17 24 24 O 1.21487 * 125.01772 * 179.97438 * 23 22 19 25 25 H 1.08998 * 109.47606 * 299.99827 * 1 2 3 26 26 H 1.08998 * 109.47350 * 60.00447 * 1 2 3 27 27 H 1.09005 * 109.46833 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47025 * 239.99700 * 2 1 3 29 29 H 1.09000 * 109.46881 * 119.99340 * 2 1 3 30 30 H 0.97002 * 120.00440 * 180.02562 * 8 7 5 31 31 H 0.97004 * 120.00246 * 265.00369 * 13 3 2 32 32 H 1.08999 * 109.47015 * 269.69164 * 18 17 16 33 33 H 1.09000 * 109.46646 * 29.68316 * 18 17 16 34 34 H 1.09000 * 109.47248 * 149.69034 * 18 17 16 35 35 H 1.09005 * 109.47442 * 59.99989 * 20 19 17 36 36 H 1.08997 * 109.47611 * 180.02562 * 20 19 17 37 37 H 1.09002 * 109.47288 * 300.00170 * 20 19 17 38 38 H 1.09006 * 109.47105 * 59.99860 * 21 19 17 39 39 H 1.09004 * 109.47353 * 179.97438 * 21 19 17 40 40 H 1.08998 * 109.47219 * 300.00207 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8798 1.3359 9 14 3.0963 0.1091 2.5702 10 1 2.8755 -1.3270 2.2635 11 1 3.7936 0.2351 3.8752 12 1 1.7877 0.8075 2.6387 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3415 2.6318 -0.4322 16 6 0.0441 3.3241 -2.6291 17 6 -1.1402 3.9239 -2.8637 18 6 -2.2934 4.0446 -1.9010 19 6 -1.0854 4.4574 -4.2761 20 6 -2.1845 3.8145 -5.1242 21 6 -1.2484 5.9787 -4.2704 22 8 0.2237 4.0956 -4.7967 23 6 0.8843 3.4298 -3.8329 24 8 2.0094 2.9840 -3.9393 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 5.8771 0.4814 2.1125 31 1 2.2719 2.1231 -1.9979 32 1 -2.9561 3.1873 -2.0186 33 1 -1.9128 4.0722 -0.8799 34 1 -2.8451 4.9615 -2.1081 35 1 -3.1585 4.0452 -4.6924 36 1 -2.1354 4.2060 -6.1402 37 1 -2.0428 2.7340 -5.1443 38 1 -0.4447 6.4281 -3.6869 39 1 -1.2068 6.3525 -5.2935 40 1 -2.2091 6.2395 -3.8266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762717989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:08 Heat of formation + Delta-G solvation = -98.067688 kcal Electronic energy + Delta-G solvation = -23091.277451 eV Core-core repulsion = 19678.950523 eV Total energy + Delta-G solvation = -3412.326927 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.84719 -39.06436 -37.87676 -35.51218 -34.63580 -32.53588 -32.28595 -31.42858 -28.81926 -27.92603 -27.39747 -23.90305 -23.14505 -22.40802 -20.48629 -20.07652 -19.47686 -17.47250 -16.55551 -16.53636 -16.00583 -15.73173 -15.14367 -14.90479 -14.58773 -14.23800 -13.88599 -13.61153 -13.50323 -13.31597 -12.94668 -12.70292 -12.67401 -12.57301 -12.37427 -12.15442 -11.92987 -11.78305 -11.62753 -11.10541 -11.05641 -10.86734 -10.61335 -10.37127 -9.89314 -9.60087 -9.53019 -9.25958 -9.15375 -8.70894 -8.04012 -6.15090 -4.17468 0.48581 2.43080 2.75742 3.26102 3.37422 3.41608 3.44219 3.68940 3.73353 4.06636 4.30579 4.35315 4.35887 4.79566 5.04924 5.07300 5.17251 5.19283 5.21601 5.29424 5.37537 5.50528 5.54679 5.68539 5.76134 5.97441 6.03533 6.08528 6.19308 6.48373 6.67657 6.69895 6.84483 6.95465 7.29639 7.30890 7.40258 7.53761 8.18833 8.58201 8.80403 8.93189 9.44647 10.97170 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027554 B = 0.005041 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.944154 B = 5553.323403 C = 6065.753884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.241 3.759 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.082 0.918 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.684 5.684 14 C 0.567 3.433 15 O -0.544 6.544 16 C -0.258 4.258 17 C -0.009 4.009 18 C -0.111 4.111 19 C 0.112 3.888 20 C -0.147 4.147 21 C -0.148 4.148 22 O -0.315 6.315 23 C 0.507 3.493 24 O -0.441 6.441 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.267 0.733 31 H 0.406 0.594 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.640 7.783 -10.940 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.138 3.862 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.100 0.900 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.333 5.333 14 C 0.352 3.648 15 O -0.426 6.426 16 C -0.263 4.263 17 C -0.012 4.012 18 C -0.166 4.166 19 C 0.074 3.926 20 C -0.204 4.204 21 C -0.205 4.205 22 O -0.232 6.232 23 C 0.349 3.651 24 O -0.325 6.325 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.244 0.756 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.340 7.532 -10.442 22.409 hybrid contribution 0.060 -0.558 0.338 0.656 sum -18.281 6.974 -10.104 22.021 Atomic orbital electron populations 1.21872 0.96974 0.99051 1.02131 1.22298 0.94361 0.99885 1.01275 1.19222 0.95891 0.88556 0.82510 0.93112 1.21076 0.88553 1.39734 1.07874 0.90033 1.24829 0.94869 0.95164 0.97613 1.69876 1.08672 1.44534 1.29771 0.86902 0.80941 0.79971 0.80896 1.20229 1.22166 1.18467 1.46309 1.14498 1.53845 1.18614 1.17197 0.83223 0.79231 0.85127 1.90707 1.51892 1.60788 1.39193 1.22708 0.97260 1.08542 0.97754 1.24031 0.94800 0.88061 0.94287 1.20822 0.93873 1.02712 0.99226 1.22047 0.82385 0.97525 0.90608 1.22003 0.96312 1.01835 1.00276 1.22019 1.03843 0.90282 1.04378 1.87414 1.28171 1.68118 1.39456 1.20951 0.85837 0.75705 0.82609 1.90900 1.16077 1.44096 1.81400 0.92774 0.93090 0.94921 0.92177 0.92606 0.92318 0.75635 0.88887 0.87336 0.90540 0.89547 0.90163 0.91089 0.90974 0.90134 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16 2 C -0.14 -3.21 5.11 -26.73 -0.14 -3.35 16 3 C 0.24 6.00 1.83 -69.08 -0.13 5.87 16 4 H 0.05 1.35 6.64 -51.93 -0.34 1.00 16 5 C -0.53 -15.20 9.31 -34.44 -0.32 -15.52 16 6 H 0.08 2.50 7.98 -52.48 -0.42 2.08 16 7 C 0.08 2.27 5.45 -17.82 -0.10 2.18 16 8 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 9 Si 0.88 22.06 24.41 -169.99 -4.15 17.91 16 10 H -0.28 -6.66 6.83 56.52 0.39 -6.28 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 13 N -0.68 -15.19 5.01 -55.93 -0.28 -15.47 16 14 C 0.57 11.20 6.39 -12.41 -0.08 11.12 16 15 O -0.54 -11.23 11.74 5.30 0.06 -11.16 16 16 C -0.26 -4.09 6.15 -103.63 -0.64 -4.73 16 17 C -0.01 -0.10 5.13 -100.37 -0.51 -0.62 16 18 C -0.11 -1.00 9.78 36.01 0.35 -0.65 16 19 C 0.11 1.07 1.39 -91.59 -0.13 0.94 16 20 C -0.15 -0.97 8.92 37.15 0.33 -0.64 16 21 C -0.15 -1.01 8.90 37.16 0.33 -0.68 16 22 O -0.31 -4.28 10.58 -39.55 -0.42 -4.69 16 23 C 0.51 8.43 8.53 34.36 0.29 8.72 16 24 O -0.44 -8.75 15.86 -18.92 -0.30 -9.05 16 25 H 0.05 1.12 7.84 -51.93 -0.41 0.72 16 26 H 0.05 1.01 5.64 -51.93 -0.29 0.71 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.33 3.21 -51.93 -0.17 1.16 16 30 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.41 9.07 6.23 -40.82 -0.25 8.82 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.30 6.34 -51.93 -0.33 0.97 16 34 H 0.08 0.43 7.50 -51.93 -0.39 0.04 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.37 7.53 -51.93 -0.39 -0.02 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -33.26 319.79 -5.47 -38.73 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.56 Total: 5.25 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -0.42 Total: 0.07 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.49 Total: -41.87 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.66 Total: -24.91 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.15 Total: 17.91 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.26 -5.47 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762717989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.337 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds