Wall clock time and date at job start Tue Mar 31 2020 06:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47179 * 2 1 4 4 H 1.09003 * 109.47242 * 305.58241 * 3 2 1 5 5 C 1.52997 * 109.47638 * 185.57954 * 3 2 1 6 6 O 1.42903 * 109.47054 * 65.36937 * 5 3 2 7 7 C 1.50702 * 109.47079 * 65.57869 * 3 2 1 8 8 O 1.21280 * 119.99766 * 21.53496 * 7 3 2 9 9 N 1.34773 * 120.00137 * 201.53624 * 7 3 2 10 10 C 1.46500 * 120.00193 * 2.76937 * 9 7 3 11 11 C 1.50703 * 109.47187 * 85.45795 * 10 9 7 12 12 H 1.07999 * 120.00094 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99812 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00078 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99954 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47236 * 60.00004 * 15 13 11 17 17 H 1.48499 * 109.47352 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47019 * 299.99811 * 15 13 11 19 19 C 1.46502 * 120.00046 * 182.76169 * 9 7 3 20 20 C 1.50705 * 109.46764 * 90.00125 * 19 9 7 21 21 C 1.34517 * 125.78465 * 89.71677 * 20 19 9 22 22 C 1.41390 * 106.83843 * 179.89080 * 21 20 19 23 23 C 1.34520 * 106.83841 * 0.37355 * 22 21 20 24 24 O 1.34302 * 108.42171 * 359.76883 * 23 22 21 25 25 H 1.09001 * 109.47065 * 54.54417 * 1 2 3 26 26 H 1.08996 * 109.46882 * 174.54449 * 1 2 3 27 27 H 1.08994 * 109.47057 * 294.54744 * 1 2 3 28 28 H 1.09002 * 109.47066 * 240.00734 * 2 1 3 29 29 H 1.08990 * 109.47687 * 120.00131 * 2 1 3 30 30 H 1.08999 * 109.47804 * 185.37095 * 5 3 2 31 31 H 1.09002 * 109.46723 * 305.37483 * 5 3 2 32 32 H 0.96701 * 113.99859 * 180.02562 * 6 5 3 33 33 H 1.08997 * 109.47401 * 205.46139 * 10 9 7 34 34 H 1.08998 * 109.46996 * 325.46157 * 10 9 7 35 35 H 0.97003 * 119.99834 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.47319 * 210.00075 * 19 9 7 37 37 H 1.08992 * 109.47241 * 330.00586 * 19 9 7 38 38 H 1.07997 * 126.58392 * 0.02562 * 21 20 19 39 39 H 1.08002 * 126.57947 * 180.16188 * 22 21 20 40 40 H 1.07996 * 125.78647 * 179.74925 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9844 -0.8358 5 6 3.5635 1.4449 -0.1402 6 8 3.9248 0.9241 -1.4210 7 6 1.6536 2.1119 1.2937 8 8 1.3951 1.4407 2.2702 9 7 1.5953 3.4565 1.3656 10 6 1.8482 4.2656 0.1707 11 6 0.5728 4.4066 -0.6196 12 1 -0.3354 3.9406 -0.2669 13 6 0.5654 5.1307 -1.7930 14 7 1.6712 5.6986 -2.2221 15 14 -1.0156 5.3061 -2.7723 16 1 -2.0458 5.9706 -1.9342 17 1 -0.7592 6.1262 -3.9835 18 1 -1.4987 3.9616 -3.1774 19 6 1.2789 4.1090 2.6385 20 6 2.5537 4.3755 3.3969 21 6 3.3034 5.4888 3.3084 22 6 4.3977 5.3166 4.1869 23 6 4.2556 4.1047 4.7534 24 8 3.1369 3.5394 4.2712 25 1 -0.3633 0.5961 -0.8371 26 1 -0.3633 -1.0230 -0.0977 27 1 -0.3633 0.4269 0.9347 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.9357 2.4649 -0.0447 31 1 4.0013 0.8237 0.6412 32 1 4.8783 0.8957 -1.5793 33 1 2.2022 5.2525 0.4685 34 1 2.6048 3.7785 -0.4444 35 1 1.6661 6.2077 -3.0478 36 1 0.7666 5.0517 2.4462 37 1 0.6338 3.4589 3.2295 38 1 3.1061 6.3500 2.6873 39 1 5.1965 6.0211 4.3660 40 1 4.9274 3.6616 5.4736 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779621409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:12 Heat of formation + Delta-G solvation = -81.248529 kcal Electronic energy + Delta-G solvation = -23183.755159 eV Core-core repulsion = 19772.157565 eV Total energy + Delta-G solvation = -3411.597594 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21903 -39.53216 -36.63785 -35.31932 -33.67621 -32.79748 -32.52631 -30.55120 -28.79062 -27.34475 -25.52171 -23.46777 -22.87963 -21.49803 -21.37435 -20.11134 -18.25773 -17.30370 -17.15934 -16.40886 -16.24273 -15.80989 -15.05963 -14.85665 -14.49657 -14.34443 -14.20260 -13.59001 -13.19917 -12.53433 -12.51201 -12.46410 -12.34285 -12.24330 -12.14932 -11.66777 -11.50531 -11.38431 -10.96603 -10.86649 -10.61358 -10.38033 -10.30918 -10.07668 -9.86719 -9.62440 -9.57361 -9.11502 -8.58633 -8.20779 -7.88377 -6.20854 -4.28656 1.98699 2.86436 3.15092 3.24115 3.29173 3.31712 3.46570 3.92039 4.32019 4.70080 5.04021 5.12341 5.19600 5.28073 5.31801 5.40749 5.49410 5.66481 5.75072 5.86665 5.94054 6.01607 6.07582 6.10515 6.24248 6.35968 6.38603 6.42079 6.50162 6.62167 6.76932 6.79783 6.84386 7.15012 7.41679 7.49391 7.73470 7.90659 8.01290 8.21042 8.74840 8.93605 9.39487 10.85976 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.007313 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.293504 B = 3827.960578 C = 4975.406331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.109 4.109 4 H 0.122 0.878 5 C 0.093 3.907 6 O -0.565 6.565 7 C 0.530 3.470 8 O -0.560 6.560 9 N -0.593 5.593 10 C 0.235 3.765 11 C -0.542 4.542 12 H 0.062 0.938 13 C 0.068 3.932 14 N -0.888 5.888 15 Si 0.896 3.104 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.193 3.807 20 C -0.015 4.015 21 C -0.203 4.203 22 C -0.216 4.216 23 C -0.053 4.053 24 O -0.168 6.168 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.375 0.625 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.266 0.734 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.042 -3.647 7.103 9.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.136 4.136 3 C -0.130 4.130 4 H 0.140 0.860 5 C 0.015 3.985 6 O -0.370 6.370 7 C 0.318 3.682 8 O -0.440 6.440 9 N -0.323 5.323 10 C 0.116 3.884 11 C -0.581 4.581 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.526 5.526 15 Si 0.723 3.277 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.199 1.199 19 C 0.070 3.930 20 C -0.067 4.067 21 C -0.223 4.223 22 C -0.235 4.235 23 C -0.122 4.122 24 O -0.063 6.063 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.221 0.779 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.203 -4.195 7.455 9.531 hybrid contribution 0.113 0.715 -0.613 0.948 sum 4.316 -3.480 6.842 8.807 Atomic orbital electron populations 1.21778 0.95871 1.00831 1.02431 1.21286 0.96066 0.94394 1.01901 1.21353 0.95493 0.98028 0.98096 0.85963 1.21956 0.94303 0.97675 0.84614 1.86484 1.28118 1.86979 1.35384 1.20303 0.76577 0.82122 0.89205 1.90594 1.50913 1.64140 1.38304 1.48344 1.68015 1.05855 1.10127 1.19552 0.97292 0.90882 0.80679 1.21436 0.95741 1.33748 1.07150 0.91981 1.24920 0.96542 0.94949 0.97140 1.69908 1.26666 1.33450 1.22569 0.86580 0.83300 0.78417 0.79360 1.20122 1.21128 1.19950 1.19706 0.88971 1.00215 0.84155 1.23265 0.98966 0.89812 0.94608 1.21680 0.96502 1.00457 1.03657 1.21795 1.01569 0.98456 1.01698 1.23961 0.90229 0.94907 1.03077 1.84105 1.32472 1.42753 1.46951 0.92586 0.93379 0.92290 0.91233 0.91792 0.92893 0.94015 0.77877 0.94436 0.94005 0.92411 0.87074 0.89153 0.83343 0.83866 0.78718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.62 37.16 0.36 -2.25 16 2 C -0.10 -1.74 5.03 -26.73 -0.13 -1.87 16 3 C -0.11 -2.12 1.58 -91.77 -0.15 -2.26 16 4 H 0.12 2.70 6.46 -51.93 -0.34 2.36 16 5 C 0.09 1.61 6.11 37.16 0.23 1.84 16 6 O -0.57 -9.11 13.12 -35.23 -0.46 -9.57 16 7 C 0.53 11.11 6.17 -10.99 -0.07 11.04 16 8 O -0.56 -12.55 14.63 5.56 0.08 -12.47 16 9 N -0.59 -12.33 2.45 -176.43 -0.43 -12.76 16 10 C 0.24 5.44 4.80 -5.19 -0.02 5.42 16 11 C -0.54 -13.73 8.61 -34.44 -0.30 -14.03 16 12 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 13 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -24.07 13.29 55.43 0.74 -23.33 16 15 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 17 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 C 0.19 3.57 5.94 -5.19 -0.03 3.54 16 20 C -0.01 -0.26 6.90 -35.62 -0.25 -0.51 16 21 C -0.20 -3.33 10.81 -39.70 -0.43 -3.76 16 22 C -0.22 -3.07 10.91 -39.70 -0.43 -3.50 16 23 C -0.05 -0.75 12.09 29.42 0.36 -0.39 16 24 O -0.17 -2.97 10.65 5.71 0.06 -2.91 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.10 6.93 -51.93 -0.36 0.74 16 28 H 0.07 1.16 7.69 -51.93 -0.40 0.76 16 29 H 0.06 1.13 7.68 -51.93 -0.40 0.73 16 30 H 0.05 0.96 6.73 -51.93 -0.35 0.61 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.38 4.09 9.12 45.56 0.42 4.51 16 33 H 0.04 0.90 8.04 -51.93 -0.42 0.49 16 34 H 0.04 1.02 5.20 -51.93 -0.27 0.75 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.11 1.90 8.07 -51.93 -0.42 1.49 16 37 H 0.09 1.67 7.38 -51.93 -0.38 1.28 16 38 H 0.15 2.34 8.06 -52.49 -0.42 1.91 16 39 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.20 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -30.29 337.06 -5.92 -36.21 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.00 Total: 9.48 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.97 Total: -5.08 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.30 Total: -36.09 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.32 Total: -24.95 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.29 -5.92 -36.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779621409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.037 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds