Wall clock time and date at job start Tue Mar 31 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 N 1.30640 * 125.41067 * 89.99864 * 4 3 2 6 6 C 1.33653 * 109.00600 * 179.97438 * 5 4 3 7 7 C 1.50699 * 126.27743 * 180.02562 * 6 5 4 8 8 C 1.36440 * 107.44405 * 0.02562 * 6 5 4 9 9 C 1.46540 * 126.65489 * 179.97438 * 8 6 5 10 10 O 1.21613 * 119.99849 * 0.02562 * 9 8 6 11 11 O 1.34878 * 120.00145 * 179.97438 * 9 8 6 12 12 C 1.45193 * 117.00028 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47355 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47788 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47507 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00054 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99909 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00282 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99916 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 90.00283 * 19 17 15 21 21 H 1.48502 * 109.46989 * 209.99994 * 19 17 15 22 22 H 1.48496 * 109.47006 * 330.00205 * 19 17 15 23 23 O 1.33649 * 125.41623 * 269.69358 * 4 3 2 24 24 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 28 28 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 31 31 H 1.09004 * 109.47346 * 89.97866 * 7 6 5 32 32 H 1.09007 * 109.46951 * 209.97524 * 7 6 5 33 33 H 1.09000 * 109.47479 * 329.97477 * 7 6 5 34 34 H 1.08997 * 109.47661 * 300.00188 * 12 11 9 35 35 H 1.09001 * 109.47508 * 60.00593 * 12 11 9 36 36 H 1.08997 * 109.47556 * 300.00457 * 13 12 11 37 37 H 1.09005 * 109.47051 * 60.00117 * 13 12 11 38 38 H 1.08997 * 109.47038 * 300.00887 * 14 13 12 39 39 H 1.09005 * 109.46637 * 59.99976 * 14 13 12 40 40 H 0.97000 * 120.00424 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3044 1.4422 -1.0638 6 6 5.5864 1.4427 -0.6858 7 6 6.7853 1.4432 -1.5989 8 6 5.6106 1.4427 0.6784 9 6 6.8015 1.4427 1.5323 10 8 7.9093 1.4432 1.0306 11 8 6.6690 1.4433 2.8745 12 6 7.8916 1.4427 3.6576 13 6 7.5432 1.4428 5.1474 14 6 8.8315 1.4415 5.9727 15 6 8.4883 1.4422 7.4400 16 1 7.4545 1.4430 7.7527 17 6 9.4939 1.4418 8.3832 18 7 10.7527 1.4403 8.0024 19 14 9.0683 1.4420 10.2021 20 1 8.9551 0.0419 10.6841 21 1 10.1365 2.1416 10.9603 22 1 7.7752 2.1425 10.4079 23 8 4.3211 1.4483 1.0901 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 7.0737 2.4711 -1.8194 32 1 7.6140 0.9301 -1.1108 33 1 6.5355 0.9289 -2.5269 34 1 8.4742 0.5523 3.4212 35 1 8.4754 2.3322 3.4207 36 1 6.9605 2.3329 5.3842 37 1 6.9597 0.5530 5.3841 38 1 9.4139 0.5511 5.7357 39 1 9.4154 2.3310 5.7360 40 1 11.4602 1.4404 8.6660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796556487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:39 Heat of formation + Delta-G solvation = -95.845681 kcal Electronic energy + Delta-G solvation = -21048.153138 eV Core-core repulsion = 17635.922565 eV Total energy + Delta-G solvation = -3412.230574 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.74194 -40.14502 -36.76132 -35.86062 -35.40849 -34.02209 -32.02742 -31.65443 -28.85191 -28.12126 -26.78296 -23.82591 -22.94743 -22.15171 -21.59899 -20.85888 -20.36259 -18.21874 -17.32373 -16.98094 -16.28681 -16.13352 -16.06256 -15.52209 -14.81113 -14.48428 -14.13152 -13.75346 -13.57285 -13.51541 -13.27898 -12.74530 -12.57199 -12.26874 -12.23879 -12.12732 -11.93587 -11.82923 -11.30805 -11.20063 -11.14699 -10.99963 -10.76525 -10.68900 -10.52941 -10.48059 -9.77697 -9.55486 -9.19145 -9.13353 -8.40563 -6.05364 -4.08492 0.44140 1.98357 2.03545 2.69691 2.82857 3.30007 3.36204 3.39773 3.50696 4.33412 4.40555 4.44428 4.46005 4.58579 4.81977 4.98659 5.12245 5.22519 5.25819 5.28022 5.30668 5.41526 5.50662 5.50868 5.54472 5.57927 5.67655 5.69685 5.80508 5.93705 6.00859 6.30369 6.49363 6.72366 6.93450 7.24090 7.57440 7.67789 7.68113 7.92702 8.33572 8.97611 9.55933 11.06078 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020559 B = 0.002878 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.604936 B = 9725.233046 C =10956.469812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.029 4.029 4 C 0.229 3.771 5 N -0.488 5.488 6 C 0.092 3.908 7 C -0.084 4.084 8 C -0.100 4.100 9 C 0.554 3.446 10 O -0.483 6.483 11 O -0.345 6.345 12 C 0.068 3.932 13 C -0.109 4.109 14 C 0.025 3.975 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 O -0.171 6.171 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.356 -0.895 -19.450 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.067 4.067 4 C 0.024 3.976 5 N -0.218 5.218 6 C -0.032 4.032 7 C -0.141 4.141 8 C -0.153 4.153 9 C 0.397 3.603 10 O -0.373 6.373 11 O -0.261 6.261 12 C -0.005 4.005 13 C -0.147 4.147 14 C -0.013 4.013 15 C -0.560 4.560 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 O -0.057 6.057 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.079 -0.885 -20.008 26.321 hybrid contribution 0.283 0.035 1.769 1.791 sum -16.796 -0.850 -18.239 24.809 Atomic orbital electron populations 1.21747 0.94290 1.02485 1.02310 1.21556 0.96802 0.94269 1.03533 1.20363 0.80308 1.00100 1.05894 1.26653 0.96565 0.95721 0.78624 1.70391 1.01213 1.20406 1.29836 1.22131 0.93799 0.96572 0.90680 1.20457 0.92022 1.04059 0.97553 1.21739 0.81780 1.18219 0.93541 1.18883 0.85560 0.73818 0.82021 1.90916 1.24500 1.46472 1.75437 1.86664 1.40000 1.82769 1.16705 1.23659 0.82593 1.02582 0.91617 1.21793 1.02159 1.02152 0.88608 1.19055 0.90545 0.97759 0.93896 1.21162 0.92921 1.51071 0.90862 0.92414 1.25028 0.94988 0.95164 0.99277 1.69962 0.98895 1.50500 1.33996 0.86539 0.78115 0.78151 0.84887 1.20598 1.21170 1.19798 1.84553 1.15783 1.68630 1.36759 0.92174 0.92251 0.92002 0.90879 0.91050 0.88152 0.87076 0.89591 0.88510 0.90075 0.91019 0.91008 0.92021 0.92031 0.96150 0.96144 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.15 0.37 -0.31 16 2 C -0.12 -0.75 5.92 -26.74 -0.16 -0.91 16 3 C -0.03 -0.19 5.84 -27.88 -0.16 -0.35 16 4 C 0.23 2.57 7.57 -12.78 -0.10 2.47 16 5 N -0.49 -6.10 11.26 -7.06 -0.08 -6.18 16 6 C 0.09 1.22 7.16 -82.45 -0.59 0.63 16 7 C -0.08 -0.89 9.87 36.01 0.36 -0.53 16 8 C -0.10 -1.47 7.25 -36.89 -0.27 -1.74 16 9 C 0.55 9.16 7.93 34.08 0.27 9.43 16 10 O -0.48 -8.37 14.59 -19.35 -0.28 -8.66 16 11 O -0.35 -6.15 10.23 -41.97 -0.43 -6.58 16 12 C 0.07 1.26 5.48 37.16 0.20 1.46 16 13 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 14 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 15 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 19 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 23 O -0.17 -2.37 10.79 4.38 0.05 -2.32 16 24 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.10 6.47 -51.92 -0.34 0.77 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 347.66 15.07 5.24 5.24 Total: -1.00 -31.98 347.66 -6.78 -38.76 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -6.22 Total: -5.48 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.78 Total: -5.28 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.66 Total: -32.20 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.66 Total: -17.56 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.98 -6.78 -38.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796556487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.086 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds