Wall clock time and date at job start Tue Mar 31 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34325 * 126.44781 * 2 1 4 4 N 1.34475 * 107.67128 * 180.02562 * 3 2 1 5 5 C 1.30253 * 108.69954 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.61825 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47367 * 195.02053 * 6 5 4 8 8 C 1.53000 * 109.47224 * 75.02046 * 6 5 4 9 9 O 1.45206 * 109.47006 * 315.02078 * 6 5 4 10 10 C 1.34224 * 117.00077 * 210.00139 * 9 6 5 11 11 O 1.20833 * 120.00103 * 359.97438 * 10 9 6 12 12 C 1.50696 * 120.00302 * 180.02562 * 10 9 6 13 13 C 1.52999 * 109.47581 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47606 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47251 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46835 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00169 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99658 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00016 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99706 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47515 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46930 * 120.00182 * 20 18 16 23 23 H 1.48497 * 109.47526 * 239.99837 * 20 18 16 24 24 O 1.33965 * 108.76220 * 0.21992 * 5 4 3 25 25 H 1.09002 * 109.47408 * 89.96981 * 1 2 3 26 26 H 1.09001 * 109.47290 * 209.96781 * 1 2 3 27 27 H 1.08999 * 109.47240 * 329.97023 * 1 2 3 28 28 H 1.08000 * 126.16053 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47214 * 180.02562 * 8 6 5 30 30 H 1.09008 * 109.47142 * 299.99641 * 8 6 5 31 31 H 1.08992 * 109.47123 * 59.99607 * 8 6 5 32 32 H 1.09009 * 109.46972 * 299.99362 * 12 10 9 33 33 H 1.08995 * 109.47473 * 59.99636 * 12 10 9 34 34 H 1.09005 * 109.46903 * 300.00018 * 13 12 10 35 35 H 1.09000 * 109.47608 * 59.99121 * 13 12 10 36 36 H 1.09002 * 109.46566 * 299.99970 * 14 13 12 37 37 H 1.09000 * 109.47303 * 59.98998 * 14 13 12 38 38 H 1.08997 * 109.47192 * 299.99573 * 15 14 13 39 39 H 1.09003 * 109.46861 * 59.99913 * 15 14 13 40 40 H 0.97002 * 119.99857 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5764 -0.6549 -0.0015 6 6 4.8003 -1.5342 -0.0029 7 1 4.5161 -2.5521 -0.2697 8 6 5.4330 -1.5299 1.3902 9 8 5.7578 -1.0294 -0.9709 10 6 6.5634 -1.9288 -1.5571 11 8 6.4719 -3.0991 -1.2706 12 6 7.5827 -1.4790 -2.5718 13 6 8.3637 -2.6915 -3.0824 14 6 9.3981 -2.2349 -4.1130 15 6 10.1794 -3.4474 -4.6231 16 6 11.1980 -2.9976 -5.6388 17 1 11.2801 -1.9516 -5.8945 18 6 12.0250 -3.9217 -6.2415 19 7 11.9246 -5.1955 -5.9305 20 14 13.2879 -3.3641 -7.4998 21 1 13.1998 -1.8916 -7.6706 22 1 14.6489 -3.7268 -7.0293 23 1 13.0195 -4.0305 -8.7994 24 8 2.3074 -1.0840 -0.0064 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3634 -0.8903 0.5133 27 1 -0.3633 0.8897 0.5143 28 1 1.9822 2.1111 -0.0004 29 1 6.3185 -2.1656 1.3890 30 1 5.7173 -0.5120 1.6570 31 1 4.7143 -1.9087 2.1167 32 1 7.0753 -0.9962 -3.4071 33 1 8.2707 -0.7727 -2.1072 34 1 8.8710 -3.1749 -2.2474 35 1 7.6755 -3.3976 -3.5471 36 1 8.8904 -1.7519 -4.9479 37 1 10.0864 -1.5286 -3.6487 38 1 10.6872 -3.9300 -3.7881 39 1 9.4913 -4.1539 -5.0874 40 1 12.5062 -5.8456 -6.3548 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:05 Heat of formation + Delta-G solvation = -88.674989 kcal Electronic energy + Delta-G solvation = -20885.911560 eV Core-core repulsion = 17473.991931 eV Total energy + Delta-G solvation = -3411.919629 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.73316 -40.66370 -37.13295 -35.08635 -34.98648 -33.61918 -32.68136 -31.76908 -29.84562 -27.26918 -26.04114 -24.41481 -23.13342 -22.20375 -21.24571 -20.43052 -20.03197 -17.83556 -17.70272 -17.12734 -16.45947 -16.19544 -16.11998 -14.98484 -14.81142 -14.48872 -14.29712 -13.87952 -13.64877 -13.58363 -13.25225 -12.84572 -12.67136 -12.53644 -12.33472 -11.82323 -11.68160 -11.66317 -11.61410 -11.07598 -11.01852 -10.82848 -10.60440 -10.58222 -10.46840 -10.42370 -9.65043 -9.29841 -9.09825 -9.00250 -8.31688 -5.96346 -3.98701 0.94240 1.78309 2.19379 2.30838 2.89509 3.33242 3.40580 3.44736 3.56426 4.32489 4.45490 4.48920 4.51834 4.60682 4.73114 4.88171 4.90983 5.04687 5.17455 5.26749 5.30082 5.36536 5.39338 5.45709 5.62922 5.70099 5.74855 5.92087 6.05247 6.17449 6.27797 6.46560 6.76496 6.94403 7.16335 7.36049 7.70213 7.72867 7.87157 8.04579 8.46449 9.09084 9.65152 11.15003 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.041006 B = 0.002297 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.655599 B =12185.542147 C =12381.060824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.043 4.043 3 C -0.044 4.044 4 N -0.448 5.448 5 C 0.182 3.818 6 C 0.188 3.812 7 H 0.112 0.888 8 C -0.161 4.161 9 O -0.340 6.340 10 C 0.463 3.537 11 O -0.501 6.501 12 C -0.110 4.110 13 C -0.108 4.108 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.056 0.944 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 O -0.196 6.196 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.187 0.813 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.714 11.349 15.191 29.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 C -0.183 4.183 4 N -0.177 5.177 5 C -0.025 4.025 6 C 0.131 3.869 7 H 0.130 0.870 8 C -0.219 4.219 9 O -0.257 6.257 10 C 0.306 3.694 11 O -0.387 6.387 12 C -0.147 4.147 13 C -0.146 4.146 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 O -0.083 6.083 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.204 0.796 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.143 11.129 15.255 29.101 hybrid contribution -0.048 -0.183 -0.696 0.721 sum -22.191 10.946 14.559 28.709 Atomic orbital electron populations 1.20310 0.83618 1.04532 1.04073 1.23594 0.95131 0.84485 1.06424 1.23206 0.87665 1.00555 1.06919 1.70448 1.22836 1.08846 1.15618 1.25544 0.83877 0.90153 1.02912 1.20348 0.81543 0.94737 0.90241 0.87021 1.22177 1.02152 1.04580 0.92942 1.86686 1.45266 1.41148 1.52598 1.24401 0.80411 0.84370 0.80191 1.90679 1.67874 1.18931 1.61248 1.21645 0.95009 1.02175 0.95881 1.21597 0.98019 0.94940 1.00048 1.21652 0.96192 1.00721 0.96220 1.19105 0.94491 0.92242 0.95925 1.21315 1.17904 0.93726 1.22852 0.92619 1.25048 0.97561 0.94958 0.97080 1.69983 1.39227 1.01007 1.43252 0.86544 0.81375 0.78790 0.81329 1.19749 1.21058 1.21063 1.84375 1.17331 1.36747 1.69827 0.89513 0.90177 0.88763 0.79635 0.89910 0.90272 0.90267 0.87711 0.87520 0.91413 0.91507 0.93174 0.93122 0.96508 0.96542 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.43 36.00 0.38 0.09 16 2 C -0.04 -0.38 7.39 -35.69 -0.26 -0.64 16 3 C -0.04 -0.42 11.80 -17.77 -0.21 -0.63 16 4 N -0.45 -5.68 11.29 -11.10 -0.13 -5.80 16 5 C 0.18 2.21 7.24 -12.95 -0.09 2.12 16 6 C 0.19 2.19 3.12 -27.88 -0.09 2.10 16 7 H 0.11 1.28 7.16 -51.93 -0.37 0.91 16 8 C -0.16 -1.52 9.53 37.16 0.35 -1.16 16 9 O -0.34 -4.54 9.86 -39.24 -0.39 -4.93 16 10 C 0.46 6.59 7.93 36.00 0.29 6.88 16 11 O -0.50 -8.29 15.20 -18.76 -0.29 -8.58 16 12 C -0.11 -1.47 5.81 -27.89 -0.16 -1.63 16 13 C -0.11 -1.85 4.50 -26.73 -0.12 -1.97 16 14 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 20 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 O -0.20 -2.20 10.78 5.36 0.06 -2.14 16 25 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.19 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 33 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -34.35 348.89 -6.63 -40.97 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -6.25 Total: -4.47 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.61 Total: -10.54 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.61 Total: -32.43 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.61 Total: -15.64 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.35 -6.63 -40.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.701 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds