Wall clock time and date at job start Tue Mar 31 2020 05:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 110.06391 * 2 1 4 4 C 1.53999 * 109.91459 * 121.20294 * 2 1 3 5 5 H 1.09001 * 110.30641 * 359.21391 * 4 2 1 6 6 C 1.53000 * 110.30493 * 237.14514 * 4 2 1 7 7 F 1.39896 * 109.47136 * 57.80945 * 6 4 2 8 8 F 1.39905 * 109.46666 * 177.80560 * 6 4 2 9 9 F 1.39899 * 109.47393 * 297.80105 * 6 4 2 10 10 C 1.54593 * 105.22262 * 118.18073 * 4 2 1 11 11 C 1.55191 * 102.80466 * 338.01215 * 10 4 2 12 12 N 1.47895 * 109.91982 * 238.79411 * 2 1 3 13 13 C 1.46900 * 111.00155 * 26.48928 * 12 2 1 14 14 C 1.53001 * 109.47385 * 190.00096 * 13 12 2 15 15 H 1.08997 * 109.47246 * 60.00119 * 14 13 12 16 16 O 1.42904 * 109.47131 * 300.00200 * 14 13 12 17 17 C 1.50695 * 109.47366 * 180.02562 * 14 13 12 18 18 H 1.08000 * 119.99805 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00469 * 180.02562 * 17 14 13 20 20 N 1.31507 * 120.00518 * 179.97438 * 19 17 14 21 21 Si 1.86806 * 119.99518 * 359.97438 * 19 17 14 22 22 H 1.48491 * 109.47210 * 90.00546 * 21 19 17 23 23 H 1.48504 * 109.46776 * 210.00204 * 21 19 17 24 24 H 1.48499 * 109.47142 * 330.00083 * 21 19 17 25 25 H 1.08997 * 109.47543 * 298.79191 * 1 2 3 26 26 H 1.08996 * 109.46884 * 58.80067 * 1 2 3 27 27 H 1.09004 * 109.46967 * 178.79383 * 1 2 3 28 28 H 1.09002 * 109.46902 * 177.06277 * 3 2 1 29 29 H 1.09001 * 109.47079 * 297.06367 * 3 2 1 30 30 H 1.09004 * 109.47021 * 57.06093 * 3 2 1 31 31 H 1.09005 * 110.72486 * 96.35562 * 10 4 2 32 32 H 1.09003 * 110.71850 * 219.62999 * 10 4 2 33 33 H 1.08993 * 110.68054 * 278.98697 * 11 10 4 34 34 H 1.09002 * 110.78375 * 155.92838 * 11 10 4 35 35 H 1.08997 * 109.47018 * 310.00209 * 13 12 2 36 36 H 1.08997 * 109.46832 * 69.99961 * 13 12 2 37 37 H 0.96702 * 113.99992 * 299.99954 * 16 14 13 38 38 H 0.97003 * 120.00267 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4372 0.0000 4 6 2.0546 -0.7501 1.2384 5 1 1.2224 -1.1028 1.8477 6 6 2.9673 0.1597 2.0631 7 9 2.2639 1.3090 2.4390 8 9 3.3934 -0.5217 3.2083 9 9 4.0794 0.5234 1.2962 10 6 2.8552 -1.9482 0.6784 11 6 2.2661 -2.1193 -0.7471 12 7 2.0339 -0.7204 -1.1893 13 6 1.0593 -0.6704 -2.2873 14 6 1.4961 -1.6243 -3.4009 15 1 1.5499 -2.6399 -3.0090 16 8 2.7816 -1.2324 -3.8868 17 6 0.4966 -1.5725 -4.5275 18 1 -0.3643 -0.9243 -4.4562 19 6 0.6806 -2.3532 -5.6489 20 7 -0.1919 -2.3084 -6.6318 21 14 2.1694 -3.4749 -5.7719 22 1 1.8347 -4.8057 -5.2046 23 1 2.5574 -3.6277 -7.1971 24 1 3.2994 -2.8827 -5.0119 25 1 -0.3634 0.4949 0.9006 26 1 -0.3633 0.5323 -0.8790 27 1 -0.3633 -1.0275 -0.0216 28 1 3.1436 1.4263 0.0527 29 1 1.7404 1.9388 -0.9151 30 1 1.6547 1.9701 0.8625 31 1 3.9186 -1.7134 0.6316 32 1 2.6825 -2.8416 1.2785 33 1 1.3277 -2.6725 -0.7119 34 1 2.9801 -2.6167 -1.4035 35 1 0.0788 -0.9693 -1.9166 36 1 1.0054 0.3453 -2.6792 37 1 2.8081 -0.3371 -4.2513 38 1 -0.0622 -2.8574 -7.4209 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809579176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:17 Heat of formation + Delta-G solvation = -178.785982 kcal Electronic energy + Delta-G solvation = -24279.082706 eV Core-core repulsion = 20321.398830 eV Total energy + Delta-G solvation = -3957.683875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.33410 -47.75957 -47.66902 -39.85434 -36.09039 -32.62718 -32.33378 -32.23098 -28.55399 -27.40963 -26.78927 -24.36474 -23.68989 -21.88837 -20.14087 -19.10645 -18.59111 -18.26338 -17.27050 -17.06142 -15.68086 -15.52874 -14.90753 -14.65429 -14.52336 -14.44421 -14.26840 -14.14690 -13.99767 -13.75912 -13.42836 -13.06955 -12.96203 -12.78729 -12.54025 -12.17673 -11.72890 -11.54920 -11.31091 -11.23178 -11.03934 -10.93569 -10.85968 -10.66758 -10.63862 -10.34160 -9.87570 -9.01550 -8.63707 -8.22806 -7.96759 -6.14777 -4.26196 2.69702 3.36976 3.47422 3.71133 3.74400 3.82061 3.94615 4.18737 4.52134 4.56724 4.63491 4.94584 5.16444 5.18522 5.20807 5.27866 5.46186 5.57466 5.69124 5.79518 5.87573 5.92845 5.93620 5.97689 6.09029 6.15343 6.19817 6.26210 6.48181 6.63557 7.16291 7.31620 7.38619 7.65201 8.27721 8.81651 9.08899 9.50224 10.95879 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.033770 B = 0.005012 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.946373 B = 5585.332929 C = 5889.136828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 C -0.186 4.186 4 C -0.140 4.140 5 H 0.115 0.885 6 C 0.463 3.537 7 F -0.180 7.180 8 F -0.187 7.187 9 F -0.169 7.169 10 C -0.118 4.118 11 C 0.040 3.960 12 N -0.493 5.493 13 C 0.025 3.975 14 C 0.198 3.802 15 H 0.052 0.948 16 O -0.572 6.572 17 C -0.566 4.566 18 H 0.071 0.929 19 C 0.084 3.916 20 N -0.894 5.894 21 Si 0.870 3.130 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.215 1.215 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.356 0.644 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 3.929 18.101 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 C -0.243 4.243 4 C -0.161 4.161 5 H 0.133 0.867 6 C 0.409 3.591 7 F -0.161 7.161 8 F -0.169 7.169 9 F -0.151 7.151 10 C -0.156 4.156 11 C -0.088 4.088 12 N -0.217 5.217 13 C -0.102 4.102 14 C 0.140 3.860 15 H 0.070 0.930 16 O -0.378 6.378 17 C -0.603 4.603 18 H 0.089 0.911 19 C -0.120 4.120 20 N -0.531 5.531 21 Si 0.696 3.304 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.137 1.137 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.202 0.798 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.398 3.540 17.951 19.076 hybrid contribution -0.473 -0.296 -0.032 0.559 sum 4.925 3.244 17.919 18.864 Atomic orbital electron populations 1.22436 0.95193 1.02341 1.02856 1.21680 0.93580 0.95259 0.88676 1.22840 1.03940 0.94135 1.03357 1.23506 0.98426 0.96412 0.97707 0.86691 1.20381 0.80431 0.79966 0.78322 1.93079 1.78508 1.52584 1.91979 1.93167 1.91016 1.79722 1.52990 1.93084 1.55427 1.92010 1.74559 1.22653 1.00434 0.95611 0.96943 1.23225 1.00151 0.91434 0.93984 1.65017 1.42559 1.09744 1.04339 1.23136 0.93133 1.01936 0.92014 1.19782 0.82472 0.92961 0.90775 0.93036 1.86641 1.34057 1.35084 1.81974 1.21497 1.09729 1.27221 1.01894 0.91115 1.24977 0.96146 0.95933 0.94966 1.69954 1.35915 1.39823 1.07363 0.87047 0.86049 0.79860 0.77440 1.21554 1.22256 1.13716 0.92278 0.90755 0.92201 0.89759 0.91900 0.90551 0.89586 0.89984 0.93482 0.88742 0.93580 0.91002 0.79783 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 6.91 37.16 0.26 -1.88 16 2 C 0.10 1.31 0.84 -130.53 -0.11 1.20 16 3 C -0.19 -2.44 7.48 37.16 0.28 -2.16 16 4 C -0.14 -1.61 2.65 -89.26 -0.24 -1.85 16 5 H 0.11 1.12 7.68 -51.93 -0.40 0.72 16 6 C 0.46 5.42 2.35 37.16 0.09 5.51 16 7 F -0.18 -2.10 14.03 2.25 0.03 -2.07 16 8 F -0.19 -2.16 17.21 2.25 0.04 -2.13 16 9 F -0.17 -2.21 13.48 2.25 0.03 -2.18 16 10 C -0.12 -1.39 6.44 -24.73 -0.16 -1.55 16 11 C 0.04 0.59 5.10 -1.76 -0.01 0.58 16 12 N -0.49 -7.90 4.88 -214.83 -1.05 -8.95 16 13 C 0.03 0.47 3.61 -3.82 -0.01 0.46 16 14 C 0.20 4.43 1.92 -27.89 -0.05 4.37 16 15 H 0.05 1.18 6.22 -51.93 -0.32 0.86 16 16 O -0.57 -12.75 10.01 -35.23 -0.35 -13.10 16 17 C -0.57 -15.29 9.34 -34.44 -0.32 -15.61 16 18 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 19 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 20 N -0.89 -26.99 13.96 55.43 0.77 -26.21 16 21 Si 0.87 21.53 26.99 -169.99 -4.59 16.94 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.21 -5.20 5.31 56.52 0.30 -4.90 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.01 6.78 -51.93 -0.35 0.66 16 27 H 0.06 0.76 7.61 -51.93 -0.39 0.36 16 28 H 0.08 1.17 5.16 -51.93 -0.27 0.90 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.91 5.64 -51.93 -0.29 0.62 16 31 H 0.09 1.05 7.17 -51.93 -0.37 0.67 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.69 8.00 -51.93 -0.42 0.27 16 34 H 0.09 1.54 7.66 -51.93 -0.40 1.14 16 35 H 0.05 0.85 5.65 -51.93 -0.29 0.56 16 36 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 37 H 0.36 7.24 9.04 45.56 0.41 7.65 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 297.63 15.07 4.49 4.49 Total: -1.00 -29.82 297.63 -5.45 -35.27 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.44 Total: 6.58 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -0.38 Total: -8.64 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.28 Total: -35.16 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.35 Total: -13.10 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.10 Total: -6.38 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.59 Total: 16.94 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.82 -5.45 -35.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809579176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.516 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds