Wall clock time and date at job start Tue Mar 31 2020 05:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35448 * 126.78247 * 2 1 4 4 C 1.41377 * 103.98941 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.80447 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47309 * 245.00048 * 5 4 3 7 7 C 1.53001 * 109.47139 * 124.99979 * 5 4 3 8 8 O 1.45198 * 109.46814 * 5.00169 * 5 4 3 9 9 C 1.34236 * 116.99732 * 209.99642 * 8 5 4 10 10 O 1.20820 * 120.00370 * 0.02562 * 9 8 5 11 11 C 1.50705 * 119.99677 * 180.02562 * 9 8 5 12 12 C 1.52998 * 109.46670 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46872 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47228 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47462 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99685 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00223 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99953 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47388 * 89.99952 * 19 17 15 21 21 H 1.48507 * 109.46859 * 209.99736 * 19 17 15 22 22 H 1.48501 * 109.47317 * 329.99461 * 19 17 15 23 23 N 1.30172 * 106.39310 * 0.02562 * 4 3 2 24 24 O 1.20922 * 111.60933 * 359.97438 * 23 4 3 25 25 H 1.09003 * 109.47548 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47353 * 299.98586 * 1 2 3 27 27 H 1.09008 * 109.46640 * 59.98085 * 1 2 3 28 28 H 1.08005 * 128.00040 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.46556 * 60.00012 * 7 5 4 30 30 H 1.08993 * 109.47323 * 180.02562 * 7 5 4 31 31 H 1.08999 * 109.47076 * 300.00211 * 7 5 4 32 32 H 1.08997 * 109.47313 * 300.00212 * 11 9 8 33 33 H 1.09002 * 109.46774 * 60.00135 * 11 9 8 34 34 H 1.08997 * 109.47312 * 300.00073 * 12 11 9 35 35 H 1.09003 * 109.47007 * 60.00477 * 12 11 9 36 36 H 1.08997 * 109.47431 * 300.00269 * 13 12 11 37 37 H 1.09003 * 109.46696 * 60.00555 * 13 12 11 38 38 H 1.09014 * 109.46991 * 300.00195 * 14 13 12 39 39 H 1.08994 * 109.47362 * 59.99889 * 14 13 12 40 40 H 0.97000 * 119.99470 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5371 -0.0006 5 6 4.9212 1.2998 -0.0003 6 1 5.4542 1.1097 -0.9319 7 6 5.7800 0.8435 1.1808 8 8 4.6484 2.7208 0.1200 9 6 5.5238 3.5602 -0.4553 10 8 6.4858 3.1221 -1.0404 11 6 5.3067 5.0492 -0.3713 12 6 6.4391 5.7717 -1.1036 13 6 6.2184 7.2833 -1.0189 14 6 7.3504 8.0059 -1.7519 15 6 7.1334 9.4949 -1.6679 16 1 6.2737 9.8866 -1.1445 17 6 8.0317 10.3570 -2.2602 18 7 9.0783 9.8800 -2.8980 19 14 7.7622 12.2025 -2.1567 20 1 8.4328 12.7335 -0.9428 21 1 8.3330 12.8545 -3.3627 22 1 6.3065 12.4869 -2.0824 23 7 3.4763 -0.7565 -0.0015 24 8 2.3094 -1.0737 -0.0010 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5136 0.8901 27 1 -0.3633 0.5142 -0.8899 28 1 2.0345 2.1270 0.0004 29 1 5.9846 -0.2233 1.0904 30 1 6.7198 1.3953 1.1813 31 1 5.2470 1.0335 2.1124 32 1 4.3538 5.3041 -0.8349 33 1 5.2957 5.3562 0.6745 34 1 7.3923 5.5168 -0.6404 35 1 6.4497 5.4645 -2.1494 36 1 5.2653 7.5379 -1.4824 37 1 6.2076 7.5909 0.0268 38 1 8.3039 7.7514 -1.2887 39 1 7.3609 7.6984 -2.7974 40 1 9.7104 10.4866 -3.3143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810790868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:00 Heat of formation + Delta-G solvation = -54.567545 kcal Electronic energy + Delta-G solvation = -20940.795138 eV Core-core repulsion = 17530.354519 eV Total energy + Delta-G solvation = -3410.440620 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.29062 -40.67352 -37.26397 -35.02715 -34.76099 -33.85939 -32.70946 -31.20753 -29.83500 -28.20699 -26.12815 -24.86333 -23.56480 -22.50236 -20.54298 -20.26700 -20.05217 -18.05540 -17.87178 -17.42840 -16.51324 -16.28442 -16.14051 -14.96283 -14.79710 -14.45807 -14.09104 -14.06460 -13.74518 -13.65850 -13.21927 -12.85327 -12.68872 -12.40028 -12.35144 -11.90827 -11.75236 -11.68228 -11.44195 -11.17429 -11.02869 -10.63020 -10.61357 -10.49240 -10.45213 -10.25794 -9.67533 -9.66024 -9.31186 -9.04021 -8.33069 -5.97850 -4.00535 1.10299 1.84328 2.18738 2.32594 2.75902 3.32694 3.38888 3.41901 3.75469 4.10419 4.46854 4.54191 4.63836 4.71861 4.76277 4.95085 4.96287 4.97657 5.16316 5.22444 5.22865 5.37253 5.37702 5.44231 5.48206 5.68371 5.70921 5.79753 6.02012 6.15400 6.31009 6.43851 6.73579 6.91674 7.13723 7.70108 7.71301 7.84985 7.89553 8.02771 8.44337 9.07008 9.63372 11.13462 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036045 B = 0.002375 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.623705 B =11787.658473 C =12321.592496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.035 4.035 3 C -0.212 4.212 4 C 0.019 3.981 5 C 0.168 3.832 6 H 0.105 0.895 7 C -0.162 4.162 8 O -0.351 6.351 9 C 0.462 3.538 10 O -0.500 6.500 11 C -0.110 4.110 12 C -0.109 4.109 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 N -0.355 5.355 24 O 0.103 5.897 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.177 0.823 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.255 -20.636 8.161 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 C -0.234 4.234 4 C -0.139 4.139 5 C 0.112 3.888 6 H 0.123 0.877 7 C -0.220 4.220 8 O -0.269 6.269 9 C 0.305 3.695 10 O -0.386 6.386 11 C -0.147 4.147 12 C -0.147 4.147 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 N -0.059 5.059 24 O 0.035 5.965 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.194 0.806 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.937 -21.769 7.876 28.105 hybrid contribution -0.287 1.722 -0.047 1.746 sum -16.225 -20.047 7.830 26.952 Atomic orbital electron populations 1.20357 0.83724 1.04710 1.04340 1.24559 0.96505 0.85933 1.02875 1.22390 0.90598 1.01452 1.08933 1.23133 0.96661 0.90344 1.03810 1.20398 0.89421 0.77153 1.01845 0.87702 1.22159 0.99873 1.02709 0.97225 1.86543 1.52123 1.17060 1.71151 1.24308 0.79985 0.90707 0.74500 1.90679 1.29453 1.78631 1.39860 1.21631 1.03443 0.84842 1.04804 1.21595 0.96227 0.96502 1.00350 1.21648 1.01050 0.91314 1.00714 1.19100 0.92805 0.94400 0.95439 1.21266 1.08837 0.91669 1.34142 0.92692 1.25046 0.95282 0.98882 0.95387 1.69976 1.12898 1.34752 1.35826 0.86599 0.78322 0.85604 0.77484 1.20691 1.21254 1.19901 1.73792 0.97218 1.15144 1.19717 1.84833 1.11044 1.33179 1.67453 0.89848 0.88997 0.88997 0.80601 0.90140 0.90693 0.91288 0.87767 0.87701 0.91461 0.91495 0.93186 0.93170 0.96543 0.96537 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 36.00 0.38 0.12 16 2 C -0.04 -0.28 7.49 -35.30 -0.26 -0.54 16 3 C -0.21 -1.98 10.46 -39.38 -0.41 -2.39 16 4 C 0.02 0.21 6.54 -82.10 -0.54 -0.32 16 5 C 0.17 1.98 3.12 -27.88 -0.09 1.90 16 6 H 0.11 1.35 7.16 -51.93 -0.37 0.98 16 7 C -0.16 -1.69 9.52 37.16 0.35 -1.33 16 8 O -0.35 -4.29 9.39 -39.27 -0.37 -4.66 16 9 C 0.46 6.38 7.93 36.01 0.29 6.67 16 10 O -0.50 -8.43 15.20 -18.74 -0.28 -8.72 16 11 C -0.11 -1.39 5.81 -27.88 -0.16 -1.55 16 12 C -0.11 -1.84 4.50 -26.73 -0.12 -1.96 16 13 C -0.11 -2.17 5.15 -26.73 -0.14 -2.30 16 14 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 15 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 16 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 N -0.35 -4.22 12.06 33.42 0.40 -3.82 16 24 O 0.10 1.05 11.20 17.16 0.19 1.24 16 25 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.09 0.23 8.14 -51.92 -0.42 -0.20 16 28 H 0.18 1.37 8.05 -52.48 -0.42 0.94 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 347.66 15.07 5.24 5.24 Total: -1.00 -33.27 347.66 -6.61 -39.88 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -6.25 Total: -4.37 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -1.25 Total: -14.95 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 1.14 Total: -30.34 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.46 Total: -12.13 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.27 -6.61 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810790868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.691 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds