Wall clock time and date at job start Tue Mar 31 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.34485 * 126.16685 * 2 1 4 4 C 1.30258 * 108.70349 * 179.73948 * 3 2 1 5 5 C 1.50694 * 125.61849 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47330 * 299.97886 * 5 4 3 7 7 C 1.53006 * 109.47178 * 59.97711 * 5 4 3 8 8 O 1.33971 * 108.75981 * 0.02562 * 4 3 2 9 9 C 1.34334 * 126.17109 * 179.69236 * 2 1 3 10 10 C 1.50703 * 126.43794 * 0.28193 * 9 2 1 11 11 O 1.45203 * 109.47040 * 89.99652 * 10 9 2 12 12 C 1.34230 * 116.99791 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00219 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00005 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47321 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.46986 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00124 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99789 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99797 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00089 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47080 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47232 * 120.00062 * 20 18 16 23 23 H 1.48497 * 109.46786 * 240.00273 * 20 18 16 24 24 H 1.08997 * 109.47722 * 90.02277 * 1 2 3 25 25 H 1.09002 * 109.47017 * 210.02303 * 1 2 3 26 26 H 1.09000 * 109.47384 * 330.02178 * 1 2 3 27 27 H 1.08997 * 109.46950 * 179.97438 * 5 4 3 28 28 H 1.08998 * 109.47565 * 59.99808 * 6 5 4 29 29 H 1.09001 * 109.47094 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.47195 * 299.99568 * 6 5 4 31 31 H 1.09005 * 109.46667 * 59.99697 * 7 5 4 32 32 H 1.08991 * 109.47241 * 179.97438 * 7 5 4 33 33 H 1.08998 * 109.47056 * 300.00427 * 7 5 4 34 34 H 1.08999 * 109.47313 * 209.99613 * 10 9 2 35 35 H 1.08996 * 109.47120 * 330.00132 * 10 9 2 36 36 H 1.08994 * 109.47158 * 300.00317 * 14 12 11 37 37 H 1.09003 * 109.46727 * 60.00563 * 14 12 11 38 38 H 1.09008 * 109.46989 * 300.00319 * 15 14 12 39 39 H 1.09001 * 109.47219 * 59.99711 * 15 14 12 40 40 H 0.97006 * 119.99519 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6948 0.0056 5 6 4.7479 1.6000 0.0082 6 6 4.7275 2.4798 -1.2434 7 6 4.7173 2.4862 1.2550 8 8 3.5734 -0.6446 0.0087 9 6 2.2997 -1.0844 0.0058 10 6 1.8493 -2.5226 0.0076 11 8 1.7100 -2.9878 -1.3608 12 6 1.3135 -4.2583 -1.5351 13 8 1.0897 -4.9583 -0.5761 14 6 1.1474 -4.8116 -2.9270 15 6 0.6903 -6.2694 -2.8452 16 6 0.5248 -6.8228 -4.2371 17 1 0.7251 -6.1972 -5.0943 18 6 0.1176 -8.1279 -4.4161 19 7 -0.1269 -8.8895 -3.3722 20 14 -0.0869 -8.8142 -6.1414 21 1 0.2485 -7.7629 -7.1353 22 1 0.8215 -9.9746 -6.3234 23 1 -1.4928 -9.2505 -6.3371 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 5.6556 0.9966 0.0134 28 1 3.8197 3.0832 -1.2487 29 1 5.5987 3.1348 -1.2413 30 1 4.7493 1.8485 -2.1317 31 1 4.7318 1.8594 2.1467 32 1 5.5889 3.1406 1.2571 33 1 3.8096 3.0895 1.2498 34 1 2.5880 -3.1340 0.5258 35 1 0.8894 -2.6020 0.5178 36 1 0.4006 -4.2266 -3.4638 37 1 2.0994 -4.7580 -3.4552 38 1 1.4368 -6.8547 -2.3082 39 1 -0.2617 -6.3226 -2.3170 40 1 -0.4130 -9.8078 -3.4982 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813222020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:39 Heat of formation + Delta-G solvation = -91.551498 kcal Electronic energy + Delta-G solvation = -21268.242848 eV Core-core repulsion = 17856.198484 eV Total energy + Delta-G solvation = -3412.044364 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.57879 -40.04755 -36.52174 -36.06394 -35.27013 -33.62673 -32.00186 -31.11912 -28.96967 -27.59919 -26.48055 -25.54346 -23.23765 -22.21460 -21.18315 -20.51336 -19.92442 -17.56073 -17.14318 -16.79214 -16.33586 -16.26196 -15.78533 -15.01362 -14.72107 -14.48043 -13.95432 -13.76613 -13.62175 -13.37229 -13.16222 -12.62072 -12.56667 -12.30084 -12.28584 -12.21101 -12.11957 -11.71190 -11.43606 -11.24527 -11.03633 -11.00034 -10.77669 -10.64907 -10.50566 -10.09305 -10.05189 -9.65821 -9.20305 -8.81186 -8.40612 -6.04262 -4.09144 1.07000 2.25318 2.42209 2.71376 3.22492 3.29333 3.37020 3.40771 3.67185 4.35936 4.42783 4.50183 4.60989 4.63253 4.72213 4.91805 5.05912 5.22920 5.29451 5.31409 5.32597 5.41394 5.42886 5.50468 5.55637 5.56669 5.72166 5.81146 5.86445 5.89316 6.07073 6.14374 6.17485 6.53017 6.82928 7.52892 7.63380 7.69246 7.94771 8.16832 8.33944 8.98005 9.55158 11.06752 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032343 B = 0.002743 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.499531 B =10206.416772 C =10492.417547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.019 3.981 3 N -0.477 5.477 4 C 0.204 3.796 5 C 0.003 3.997 6 C -0.144 4.144 7 C -0.143 4.143 8 O -0.193 6.193 9 C -0.057 4.057 10 C 0.152 3.848 11 O -0.361 6.361 12 C 0.459 3.541 13 O -0.502 6.502 14 C -0.102 4.102 15 C 0.033 3.967 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.945 22.871 8.080 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 N -0.207 5.207 4 C -0.003 4.003 5 C -0.016 4.016 6 C -0.201 4.201 7 C -0.201 4.201 8 O -0.080 6.080 9 C -0.110 4.110 10 C 0.078 3.922 11 O -0.280 6.280 12 C 0.303 3.697 13 O -0.388 6.388 14 C -0.140 4.140 15 C -0.005 4.005 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.670 23.083 8.455 25.751 hybrid contribution 0.121 -1.284 -0.723 1.478 sum 7.791 21.799 7.732 24.407 Atomic orbital electron populations 1.20204 0.86082 1.03404 1.03563 1.21605 0.98096 0.87375 1.03065 1.70327 1.00320 1.31043 1.19011 1.26302 0.95661 0.78989 0.99298 1.19681 0.90399 0.93206 0.98357 1.21842 1.03350 0.99402 0.95548 1.21842 1.03376 0.99344 0.95513 1.84393 1.30052 1.23944 1.69628 1.22574 0.80956 0.96653 1.10788 1.20853 1.02216 0.85745 0.83366 1.86661 1.79917 1.31893 1.29552 1.24878 0.72165 0.78093 0.94538 1.90650 1.46231 1.58719 1.43237 1.21808 1.03888 1.01034 0.87231 1.19041 0.97707 0.86094 0.97616 1.21182 1.46396 0.97061 0.91991 0.92232 1.25027 0.95275 0.97040 0.97018 1.70006 1.45796 1.07735 1.29222 0.86479 0.77764 0.79027 0.84383 1.19642 1.20955 1.20938 0.90004 0.90511 0.90397 0.88375 0.91137 0.90910 0.92058 0.92264 0.90919 0.91139 0.89499 0.87790 0.88770 0.88836 0.95531 0.95488 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.22 36.00 0.37 -0.40 16 2 C 0.02 0.25 7.11 -82.81 -0.59 -0.34 16 3 N -0.48 -6.29 11.29 -7.36 -0.08 -6.37 16 4 C 0.20 2.46 6.85 -12.95 -0.09 2.37 16 5 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16 6 C -0.14 -1.00 9.17 37.16 0.34 -0.66 16 7 C -0.14 -0.92 9.18 37.16 0.34 -0.58 16 8 O -0.19 -2.69 10.78 5.37 0.06 -2.63 16 9 C -0.06 -0.80 7.03 -35.68 -0.25 -1.05 16 10 C 0.15 2.15 5.80 36.01 0.21 2.36 16 11 O -0.36 -6.08 10.20 -39.26 -0.40 -6.48 16 12 C 0.46 8.91 7.96 36.01 0.29 9.19 16 13 O -0.50 -11.08 15.73 -18.75 -0.29 -11.38 16 14 C -0.10 -2.07 5.75 -27.88 -0.16 -2.23 16 15 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 16 C -0.53 -14.66 9.11 -34.44 -0.31 -14.97 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 20 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.70 7.16 -51.93 -0.37 0.33 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 1.19 8.13 -51.93 -0.42 0.77 16 35 H 0.10 1.30 7.15 -51.93 -0.37 0.93 16 36 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.03 0.75 8.10 -51.92 -0.42 0.33 16 39 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -33.30 347.68 -6.35 -39.65 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -6.20 Total: -3.98 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.38 Total: -4.29 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.65 Total: -32.47 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.64 Total: -20.49 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.30 -6.35 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813222020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.899 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds