Wall clock time and date at job start Tue Mar 31 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46791 * 2 1 4 4 C 1.50699 * 109.46963 * 179.97438 * 3 2 1 5 5 N 1.30260 * 125.61801 * 90.02734 * 4 3 2 6 6 C 1.34485 * 108.69814 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.16042 * 179.97438 * 6 5 4 8 8 C 1.34330 * 107.66950 * 359.97438 * 6 5 4 9 9 C 1.50703 * 126.44066 * 179.97438 * 8 6 5 10 10 O 1.45196 * 109.47082 * 89.99996 * 9 8 6 11 11 C 1.34221 * 116.99755 * 179.97438 * 10 9 8 12 12 O 1.20821 * 120.00611 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99928 * 180.02562 * 11 10 9 14 14 C 1.53001 * 109.47270 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47270 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99526 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00056 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00352 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99819 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47328 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47247 * 119.99755 * 19 17 15 22 22 H 1.48500 * 109.46912 * 239.99737 * 19 17 15 23 23 O 1.33967 * 125.62312 * 269.98910 * 4 3 2 24 24 H 1.08994 * 109.46879 * 299.99612 * 1 2 3 25 25 H 1.09001 * 109.47219 * 59.99975 * 1 2 3 26 26 H 1.09004 * 109.46394 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47389 * 240.00581 * 2 1 3 28 28 H 1.08994 * 109.47503 * 120.00288 * 2 1 3 29 29 H 1.09003 * 109.46873 * 60.00662 * 3 2 1 30 30 H 1.09001 * 109.47259 * 300.00000 * 3 2 1 31 31 H 1.09003 * 109.47326 * 89.98074 * 7 6 5 32 32 H 1.08997 * 109.47260 * 209.97193 * 7 6 5 33 33 H 1.08997 * 109.47671 * 329.97682 * 7 6 5 34 34 H 1.08997 * 109.46564 * 210.00722 * 9 8 6 35 35 H 1.09004 * 109.46906 * 329.99745 * 9 8 6 36 36 H 1.09004 * 109.47161 * 299.99645 * 13 11 10 37 37 H 1.08998 * 109.47657 * 59.99414 * 13 11 10 38 38 H 1.09000 * 109.46565 * 299.99273 * 14 13 11 39 39 H 1.08993 * 109.47565 * 59.99505 * 14 13 11 40 40 H 0.96998 * 120.00516 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.3060 1.4430 -1.0580 6 6 5.5925 1.4435 -0.6660 7 6 6.7976 1.4435 -1.5707 8 6 5.6095 1.4440 0.6772 9 6 6.8331 1.4441 1.5569 10 8 7.2263 2.8130 1.8389 11 6 8.3064 2.9889 2.6161 12 8 8.9038 2.0309 3.0461 13 6 8.7740 4.3816 2.9524 14 6 10.0146 4.3016 3.8442 15 6 10.4826 5.6942 4.1800 16 1 9.9487 6.5507 3.7953 17 6 11.5928 5.8749 4.9773 18 7 12.2431 4.8320 5.4453 19 14 12.1732 7.6012 5.3928 20 1 11.2768 8.5937 4.7474 21 1 12.1449 7.7920 6.8653 22 1 13.5597 7.7902 4.8958 23 8 4.3268 1.4430 1.0899 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9564 -0.8900 31 1 7.0877 2.4712 -1.7895 32 1 7.6228 0.9305 -1.0768 33 1 6.5542 0.9289 -2.5003 34 1 6.6084 0.9305 2.4917 35 1 7.6475 0.9298 1.0466 36 1 9.0212 4.9136 2.0336 37 1 7.9816 4.9139 3.4784 38 1 9.7678 3.7695 4.7630 39 1 10.8069 3.7695 3.3178 40 1 13.0239 4.9592 6.0066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814073721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:36 Heat of formation + Delta-G solvation = -94.160300 kcal Electronic energy + Delta-G solvation = -21030.707313 eV Core-core repulsion = 17618.549822 eV Total energy + Delta-G solvation = -3412.157490 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.57848 -40.05237 -36.44621 -35.73773 -35.33244 -33.62890 -32.42525 -31.17611 -28.99741 -28.69567 -26.11458 -24.67347 -22.56497 -22.19746 -21.65386 -20.72175 -19.92797 -17.56616 -17.13125 -16.72794 -16.36701 -16.21719 -15.73340 -15.44211 -14.90508 -14.48357 -14.00507 -13.86977 -13.66889 -13.42475 -13.14668 -12.70538 -12.56179 -12.31890 -12.28786 -12.24942 -12.05038 -11.79651 -11.25423 -11.20161 -11.04245 -11.00114 -10.81691 -10.64980 -10.52241 -10.09458 -10.05506 -9.66008 -9.20355 -8.82008 -8.40743 -6.04283 -4.09245 1.05387 2.24269 2.42332 2.71057 3.22835 3.29286 3.36993 3.40771 3.67273 4.39291 4.43409 4.50242 4.52795 4.60870 4.74104 4.88410 5.01809 5.11076 5.17622 5.30761 5.31335 5.36309 5.42267 5.52457 5.55372 5.57125 5.67471 5.79128 5.81605 5.86029 6.06895 6.14159 6.14578 6.52695 6.82652 7.51034 7.63280 7.69138 7.94668 8.16558 8.33756 8.97905 9.55094 11.06719 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033073 B = 0.002592 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.407931 B =10801.457527 C =11046.121104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.023 4.023 4 C 0.202 3.798 5 N -0.481 5.481 6 C 0.019 3.981 7 C -0.076 4.076 8 C -0.056 4.056 9 C 0.152 3.848 10 O -0.361 6.361 11 C 0.460 3.540 12 O -0.502 6.502 13 C -0.102 4.102 14 C 0.033 3.967 15 C -0.528 4.528 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 O -0.193 6.193 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.447 -8.968 -12.840 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.061 4.061 4 C -0.005 4.005 5 N -0.211 5.211 6 C -0.102 4.102 7 C -0.133 4.133 8 C -0.109 4.109 9 C 0.078 3.922 10 O -0.280 6.280 11 C 0.303 3.697 12 O -0.388 6.388 13 C -0.140 4.140 14 C -0.005 4.005 15 C -0.566 4.566 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 O -0.079 6.079 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.358 -9.340 -13.171 25.984 hybrid contribution 0.652 0.746 1.030 1.429 sum -19.706 -8.594 -12.141 24.690 Atomic orbital electron populations 1.21754 0.94514 1.02318 1.02275 1.21547 0.96582 0.94676 1.03240 1.20216 0.80905 0.99585 1.05440 1.26280 0.96163 0.99393 0.78665 1.70399 1.01395 1.19134 1.30211 1.21608 0.93571 1.03063 0.91923 1.20210 0.91580 1.03597 0.97902 1.22576 0.83183 1.10684 0.94411 1.20856 0.89674 0.83369 0.98300 1.86658 1.46700 1.29500 1.65157 1.24876 0.76288 0.94542 0.73955 1.90650 1.54849 1.43327 1.50011 1.21811 1.01924 0.87205 1.03036 1.19040 0.89643 0.97618 0.94157 1.21184 1.12148 0.91991 1.31315 0.92222 1.25025 0.96495 0.97029 0.95821 1.69999 1.19358 1.29261 1.34140 0.86479 0.78630 0.84386 0.78147 1.19643 1.20952 1.20950 1.84384 1.16348 1.69637 1.37580 0.92287 0.92248 0.92141 0.91011 0.91373 0.88674 0.87451 0.89968 0.90482 0.90381 0.89471 0.87772 0.88760 0.88825 0.95530 0.95485 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.34 16 2 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 3 C -0.02 -0.17 5.84 -27.88 -0.16 -0.34 16 4 C 0.20 2.39 7.60 -12.94 -0.10 2.29 16 5 N -0.48 -6.42 11.30 -7.36 -0.08 -6.51 16 6 C 0.02 0.25 7.11 -82.81 -0.59 -0.34 16 7 C -0.08 -0.78 10.22 36.00 0.37 -0.41 16 8 C -0.06 -0.78 7.03 -35.69 -0.25 -1.03 16 9 C 0.15 2.14 5.80 36.01 0.21 2.35 16 10 O -0.36 -6.06 10.20 -39.23 -0.40 -6.46 16 11 C 0.46 8.89 7.96 36.01 0.29 9.18 16 12 O -0.50 -11.06 15.73 -18.75 -0.29 -11.36 16 13 C -0.10 -2.07 5.75 -27.88 -0.16 -2.23 16 14 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 15 C -0.53 -14.65 9.11 -34.44 -0.31 -14.97 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 19 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 O -0.19 -2.64 10.77 5.38 0.06 -2.58 16 24 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.70 7.16 -51.93 -0.37 0.33 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.19 8.13 -51.93 -0.42 0.77 16 35 H 0.10 1.29 7.16 -51.93 -0.37 0.92 16 36 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -33.45 348.37 -6.67 -40.12 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -6.20 Total: -4.24 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -0.72 Total: -4.48 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.65 Total: -32.59 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.64 Total: -20.40 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.45 -6.67 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814073721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.037 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds