Wall clock time and date at job start Tue Mar 31 2020 05:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34437 * 125.45599 * 2 1 4 4 C 1.46742 * 106.37134 * 179.97438 * 3 2 1 5 5 C 1.47107 * 127.02135 * 180.02562 * 4 3 2 6 6 O 1.21549 * 119.99923 * 179.97438 * 5 4 3 7 7 O 1.34782 * 120.00253 * 359.97367 * 5 4 3 8 8 C 1.45200 * 117.00281 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47206 * 180.02562 * 8 7 5 10 10 O 1.42893 * 109.47263 * 64.99785 * 9 8 7 11 11 C 1.42904 * 114.00102 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47107 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00320 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99554 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00028 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99721 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47125 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47121 * 119.99655 * 16 14 12 19 19 H 1.48498 * 109.46581 * 239.99943 * 16 14 12 20 20 C 1.37844 * 105.95473 * 0.02562 * 4 3 2 21 21 C 1.50698 * 125.89893 * 180.02562 * 20 4 3 22 22 N 1.34627 * 108.20272 * 359.75432 * 20 4 3 23 23 C 1.46501 * 124.80573 * 180.25650 * 22 20 4 24 24 H 1.09002 * 109.47152 * 90.02370 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02470 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02451 * 1 2 3 27 27 H 1.07999 * 126.81350 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47283 * 300.00172 * 8 7 5 29 29 H 1.08995 * 109.47181 * 59.99996 * 8 7 5 30 30 H 1.09001 * 109.46639 * 185.00268 * 9 8 7 31 31 H 1.08998 * 109.46920 * 304.99546 * 9 8 7 32 32 H 1.09006 * 109.46836 * 300.00057 * 11 10 9 33 33 H 1.09000 * 109.46943 * 59.99387 * 11 10 9 34 34 H 0.97004 * 119.99600 * 180.02562 * 15 14 12 35 35 H 1.09004 * 109.47360 * 89.97198 * 21 20 4 36 36 H 1.08994 * 109.47020 * 209.97995 * 21 20 4 37 37 H 1.09009 * 109.46745 * 329.97387 * 21 20 4 38 38 H 1.09001 * 109.47020 * 270.19722 * 23 22 20 39 39 H 1.08995 * 109.47338 * 30.19900 * 23 22 20 40 40 H 1.09003 * 109.46892 * 150.19683 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2869 1.0951 0.0000 4 6 3.6736 0.6153 0.0006 5 6 4.8947 1.4356 0.0014 6 8 5.9862 0.9008 0.0023 7 8 4.8033 2.7803 0.0010 8 6 6.0492 3.5259 0.0012 9 6 5.7462 5.0256 0.0014 10 8 5.0937 5.3796 1.2224 11 6 4.7643 6.7664 1.3245 12 6 4.0846 7.0254 2.6444 13 1 3.9202 6.2122 3.3358 14 6 3.6717 8.3003 2.9686 15 7 3.8715 9.2904 2.1264 16 14 2.8286 8.6213 4.6044 17 1 2.7239 7.3502 5.3651 18 1 3.6225 9.6027 5.3864 19 1 1.4685 9.1658 4.3616 20 6 3.5984 -0.7611 0.0004 21 6 4.7690 -1.7101 0.0014 22 7 2.2984 -1.1112 0.0051 23 6 1.8038 -2.4902 0.0118 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5135 26 1 -0.3633 -0.8898 0.5142 27 1 1.9580 2.1238 0.0004 28 1 6.6246 3.2717 0.8915 29 1 6.6251 3.2713 -0.8885 30 1 6.6778 5.5844 -0.0880 31 1 5.0967 5.2651 -0.8405 32 1 5.6753 7.3617 1.2624 33 1 4.0942 7.0416 0.5101 34 1 3.5813 10.1874 2.3548 35 1 5.0507 -1.9387 1.0293 36 1 4.4912 -2.6302 -0.5125 37 1 5.6121 -1.2475 -0.5121 38 1 1.6818 -2.8374 -1.0142 39 1 2.5185 -3.1300 0.5294 40 1 0.8431 -2.5290 0.5253 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815171018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:59 Heat of formation + Delta-G solvation = -96.374610 kcal Electronic energy + Delta-G solvation = -21444.335912 eV Core-core repulsion = 18032.082402 eV Total energy + Delta-G solvation = -3412.253510 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54404 -39.61574 -36.87190 -35.73485 -33.11953 -32.79170 -32.69663 -30.03292 -29.32889 -27.26490 -26.68478 -25.02309 -22.89234 -22.27724 -21.58165 -20.34253 -18.70266 -17.37515 -16.47024 -16.32399 -16.18076 -15.88713 -15.47254 -15.08710 -14.51268 -14.27444 -14.11494 -13.55357 -13.43936 -13.37494 -13.29413 -12.69404 -12.66577 -12.64524 -12.43176 -12.32393 -11.89720 -11.87573 -11.51403 -11.31529 -10.82481 -10.80895 -10.64085 -10.18325 -10.12685 -9.95849 -9.05079 -8.80929 -8.71765 -8.14361 -8.09726 -6.07182 -4.08190 1.53478 2.28179 2.49591 3.23871 3.32416 3.38583 3.45939 3.46807 4.38109 4.40685 4.49369 4.66711 4.73105 4.84594 4.89021 5.01401 5.09777 5.27530 5.29478 5.36556 5.40006 5.41747 5.56091 5.61763 5.67904 5.81646 5.88493 5.98961 6.00468 6.14375 6.29814 6.70276 6.85501 6.97794 7.07634 7.12830 7.46695 7.84215 8.18680 8.22328 8.60556 9.05574 9.56413 11.04535 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018083 B = 0.003502 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.019125 B = 7992.499582 C = 9067.990224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.003 4.003 3 C -0.133 4.133 4 C -0.221 4.221 5 C 0.541 3.459 6 O -0.533 6.533 7 O -0.335 6.335 8 C 0.076 3.924 9 C 0.062 3.938 10 O -0.390 6.390 11 C 0.194 3.806 12 C -0.512 4.512 13 H 0.067 0.933 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.108 3.892 21 C -0.093 4.093 22 N -0.438 5.438 23 C 0.066 3.934 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.155 0.845 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.006 0.994 33 H 0.007 0.993 34 H 0.263 0.737 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 -23.834 -7.302 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.156 4.156 4 C -0.229 4.229 5 C 0.388 3.612 6 O -0.425 6.425 7 O -0.251 6.251 8 C 0.002 3.998 9 C -0.015 4.015 10 O -0.310 6.310 11 C 0.120 3.880 12 C -0.550 4.550 13 H 0.086 0.914 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.735 3.265 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.009 4.009 21 C -0.151 4.151 22 N -0.115 5.115 23 C -0.075 4.075 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.080 0.920 27 H 0.173 0.827 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.023 0.977 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.169 -24.197 -7.166 25.578 hybrid contribution -0.249 0.588 0.569 0.856 sum -4.419 -23.608 -6.597 24.908 Atomic orbital electron populations 1.20326 0.87645 1.03342 1.02600 1.20237 0.93706 0.85256 1.11749 1.21993 0.90283 0.98292 1.05006 1.19389 0.91824 0.90846 1.20827 1.20069 0.87914 0.81219 0.71994 1.90751 1.29356 1.73773 1.48654 1.86667 1.36532 1.18366 1.83504 1.23147 0.83876 0.90417 1.02336 1.22316 0.97462 0.91343 0.90408 1.87927 1.78194 1.29944 1.34904 1.20231 0.94604 0.75726 0.97484 1.21110 1.37671 0.94252 1.02012 0.91438 1.24948 0.96142 0.95630 0.97829 1.69974 1.47449 1.00558 1.35910 0.86284 0.78960 0.78329 0.82956 1.19455 1.20874 1.20843 1.20471 0.84801 0.93550 1.02082 1.20572 0.94554 0.96431 1.03508 1.43402 1.04992 1.06607 1.56544 1.22085 1.01602 0.80337 1.03501 0.91085 0.89708 0.91984 0.82688 0.90673 0.90622 0.92102 0.93269 0.97669 0.97517 0.92748 0.90294 0.91769 0.88111 0.90636 0.89599 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.05 36.01 0.36 -0.27 16 2 C 0.00 -0.03 6.84 -81.89 -0.56 -0.59 16 3 C -0.13 -1.91 10.89 -37.49 -0.41 -2.32 16 4 C -0.22 -3.46 6.33 -103.01 -0.65 -4.12 16 5 C 0.54 9.67 7.95 34.33 0.27 9.94 16 6 O -0.53 -9.80 14.67 -19.30 -0.28 -10.08 16 7 O -0.34 -6.44 10.09 -43.50 -0.44 -6.87 16 8 C 0.08 1.34 5.86 37.16 0.22 1.56 16 9 C 0.06 1.22 6.33 37.16 0.24 1.45 16 10 O -0.39 -9.92 10.30 -38.80 -0.40 -10.32 16 11 C 0.19 5.46 5.69 36.00 0.20 5.67 16 12 C -0.51 -15.49 9.43 -34.44 -0.32 -15.81 16 13 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 16 Si 0.91 22.21 29.54 -169.99 -5.02 17.19 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.11 1.36 6.93 -81.51 -0.56 0.79 16 21 C -0.09 -0.92 9.28 36.00 0.33 -0.59 16 22 N -0.44 -4.53 3.08 -115.00 -0.35 -4.88 16 23 C 0.07 0.36 10.39 59.85 0.62 0.98 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.36 6.92 -51.93 -0.36 0.01 16 27 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.44 7.60 -51.93 -0.39 0.05 16 37 H 0.10 1.17 6.51 -51.92 -0.34 0.83 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.35 7.51 -51.93 -0.39 -0.04 16 40 H 0.09 0.35 6.88 -51.93 -0.36 -0.01 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -35.82 344.72 -6.96 -42.78 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -6.03 Total: -4.69 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -0.36 Total: -1.78 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.38 Total: -31.43 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.12 Total: -27.27 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.82 -6.96 -42.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815171018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.598 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds