Wall clock time and date at job start Tue Mar 31 2020 06:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46819 * 2 1 4 4 N 1.46500 * 109.47234 * 119.99347 * 2 1 3 5 5 C 1.34953 * 125.63696 * 300.03048 * 4 2 1 6 6 C 1.35485 * 108.98568 * 179.97438 * 5 4 2 7 7 C 1.39796 * 107.84537 * 0.02562 * 6 5 4 8 8 C 1.37698 * 125.63045 * 120.00337 * 4 2 1 9 9 C 1.46486 * 126.26444 * 0.02562 * 8 4 2 10 10 O 1.21628 * 120.00051 * 179.97438 * 9 8 4 11 11 O 1.34894 * 120.00371 * 0.02562 * 9 8 4 12 12 C 1.45196 * 117.00206 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47061 * 179.97438 * 12 11 9 14 14 O 1.42900 * 109.47114 * 64.99876 * 13 12 11 15 15 C 1.42896 * 113.99749 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.46838 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99927 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99748 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00473 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00025 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47094 * 90.00079 * 20 18 16 22 22 H 1.48494 * 109.47118 * 209.99945 * 20 18 16 23 23 H 1.48496 * 109.46974 * 330.00462 * 20 18 16 24 24 H 1.08997 * 109.46365 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46814 * 299.99985 * 1 2 3 26 26 H 1.08998 * 109.46855 * 60.00604 * 1 2 3 27 27 H 1.08994 * 109.47533 * 239.99815 * 2 1 3 28 28 H 1.09000 * 109.47234 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46914 * 299.99359 * 3 2 1 30 30 H 1.08994 * 109.47219 * 59.99623 * 3 2 1 31 31 H 1.08001 * 125.51338 * 359.97438 * 5 4 2 32 32 H 1.08001 * 126.08073 * 179.73240 * 6 5 4 33 33 H 1.07997 * 126.52260 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.46838 * 300.00000 * 12 11 9 35 35 H 1.09002 * 109.47160 * 59.99750 * 12 11 9 36 36 H 1.08994 * 109.46935 * 184.99717 * 13 12 11 37 37 H 1.08996 * 109.46704 * 304.99855 * 13 12 11 38 38 H 1.09004 * 109.47364 * 299.99655 * 15 14 13 39 39 H 1.08999 * 109.47231 * 60.00149 * 15 14 13 40 40 H 0.97001 * 120.00666 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7630 -0.3301 2.4714 6 6 2.3784 -1.2010 3.3072 7 6 3.0478 -2.1460 2.5242 8 6 2.8135 -1.8147 1.2052 9 6 3.3186 -2.5281 0.0297 10 8 4.0165 -3.5143 0.1702 11 8 3.0105 -2.0908 -1.2087 12 6 3.5462 -2.8465 -2.3268 13 6 3.0929 -2.2048 -3.6398 14 8 3.6660 -0.9009 -3.7555 15 6 3.3034 -0.2109 -4.9532 16 6 3.9597 1.1456 -4.9696 17 1 4.5903 1.4504 -4.1476 18 6 3.7551 1.9975 -6.0342 19 7 2.9876 1.6262 -7.0356 20 14 4.5681 3.6792 -6.0544 21 1 5.8965 3.5790 -6.7105 22 1 3.7146 4.6326 -6.8079 23 1 4.7395 4.1629 -4.6609 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4427 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.1648 0.5157 2.7766 32 1 2.3596 -1.1679 4.3866 33 1 3.6362 -2.9774 2.8831 34 1 4.6351 -2.8448 -2.2781 35 1 3.1819 -3.8727 -2.2796 36 1 3.4200 -2.8211 -4.4772 37 1 2.0059 -2.1261 -3.6494 38 1 3.6345 -0.7856 -5.8182 39 1 2.2207 -0.0907 -4.9896 40 1 2.8433 2.2256 -7.7844 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815224764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:44 Heat of formation + Delta-G solvation = -93.887597 kcal Electronic energy + Delta-G solvation = -22318.543477 eV Core-core repulsion = 18906.397812 eV Total energy + Delta-G solvation = -3412.145665 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.59342 -39.76241 -37.08823 -36.11709 -35.24348 -32.83025 -30.61995 -29.81671 -29.21885 -27.34771 -26.97578 -23.87733 -22.68500 -22.39457 -21.67251 -20.40005 -19.60775 -17.63720 -16.93439 -16.53584 -16.46104 -15.48535 -15.40437 -14.86060 -14.71752 -14.58523 -14.32172 -14.02303 -13.57643 -13.02405 -12.81528 -12.69116 -12.61011 -12.35612 -12.25382 -12.07401 -11.98918 -11.54908 -11.36053 -11.00579 -10.93267 -10.87026 -10.80633 -10.49973 -10.40651 -10.10197 -9.19271 -8.94133 -8.82050 -8.34487 -8.27942 -6.17754 -4.19761 1.28773 2.63035 2.65955 2.83599 3.21822 3.25400 3.30960 3.35515 4.26827 4.57370 4.64643 4.71353 4.87864 4.95236 5.11550 5.18966 5.22980 5.27715 5.39789 5.43012 5.45489 5.57835 5.70335 5.81182 5.84686 5.90008 5.94488 5.98467 6.06551 6.16909 6.21198 6.53625 6.67684 6.94867 6.98768 7.17653 7.32826 7.71957 7.88333 8.06199 8.45579 8.92849 9.45401 10.93676 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.004468 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.764091 B = 6265.403638 C = 7123.826060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.105 3.895 3 C -0.159 4.159 4 N -0.402 5.402 5 C 0.032 3.968 6 C -0.219 4.219 7 C -0.104 4.104 8 C -0.046 4.046 9 C 0.536 3.464 10 O -0.509 6.509 11 O -0.346 6.346 12 C 0.074 3.926 13 C 0.061 3.939 14 O -0.391 6.391 15 C 0.195 3.805 16 C -0.515 4.515 17 H 0.066 0.934 18 C 0.058 3.942 19 N -0.898 5.898 20 Si 0.906 3.094 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.271 1.271 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.132 0.868 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.166 0.834 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.006 0.994 39 H 0.007 0.993 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 -4.644 16.326 17.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.004 3.996 3 C -0.216 4.216 4 N -0.076 5.076 5 C -0.106 4.106 6 C -0.243 4.243 7 C -0.130 4.130 8 C -0.156 4.156 9 C 0.382 3.618 10 O -0.398 6.398 11 O -0.263 6.263 12 C 0.001 3.999 13 C -0.016 4.016 14 O -0.311 6.311 15 C 0.121 3.879 16 C -0.553 4.553 17 H 0.084 0.916 18 C -0.143 4.143 19 N -0.537 5.537 20 Si 0.734 3.266 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.196 1.196 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.150 0.850 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.184 0.816 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.507 -4.632 15.895 17.448 hybrid contribution 0.245 0.681 -0.449 0.852 sum -5.262 -3.951 15.446 16.790 Atomic orbital electron populations 1.22152 0.93265 1.02938 1.03280 1.22077 0.95443 0.94929 0.87112 1.22133 1.02656 0.93711 1.03118 1.44423 1.35880 1.20411 1.06848 1.21838 1.04066 1.01882 0.82801 1.20812 1.05655 0.98548 0.99309 1.21280 1.01503 1.00598 0.89596 1.19501 1.08149 0.95079 0.92862 1.19847 0.77524 0.81944 0.82519 1.90866 1.36318 1.25745 1.86877 1.86624 1.69464 1.55458 1.14750 1.23247 0.99973 0.93963 0.82763 1.22335 0.97837 0.88085 0.93366 1.87922 1.71991 1.26061 1.45092 1.20236 0.95164 0.91589 0.80961 1.21026 1.29801 0.98881 1.05602 0.91557 1.24930 0.95360 0.98990 0.95067 1.69955 1.37780 1.37091 1.08892 0.86357 0.79190 0.82791 0.78300 1.20411 1.21037 1.19621 0.91947 0.92092 0.89974 0.85014 0.91447 0.89687 0.92363 0.81626 0.83884 0.83461 0.90315 0.90286 0.91821 0.93299 0.97619 0.97553 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.23 37.16 0.34 -1.28 16 2 C 0.10 1.33 3.50 -67.92 -0.24 1.09 16 3 C -0.16 -1.92 9.23 37.16 0.34 -1.58 16 4 N -0.40 -5.20 2.62 -105.97 -0.28 -5.48 16 5 C 0.03 0.34 10.24 -17.16 -0.18 0.16 16 6 C -0.22 -2.37 10.81 -39.98 -0.43 -2.80 16 7 C -0.10 -1.35 10.67 -39.09 -0.42 -1.77 16 8 C -0.05 -0.68 6.89 -81.99 -0.56 -1.24 16 9 C 0.54 8.97 7.92 34.05 0.27 9.24 16 10 O -0.51 -9.29 16.68 -19.36 -0.32 -9.62 16 11 O -0.35 -5.85 7.30 -43.81 -0.32 -6.17 16 12 C 0.07 1.17 5.86 37.16 0.22 1.39 16 13 C 0.06 1.09 6.33 37.16 0.24 1.32 16 14 O -0.39 -9.12 10.30 -38.80 -0.40 -9.52 16 15 C 0.19 5.15 5.69 36.01 0.20 5.35 16 16 C -0.51 -14.74 9.43 -34.44 -0.32 -15.06 16 17 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 20 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.52 7.91 -51.93 -0.41 0.10 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.13 2.03 5.07 -51.93 -0.26 1.77 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.57 7.91 -51.93 -0.41 0.16 16 31 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -32.21 344.90 -7.17 -39.38 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.13 Total: -1.04 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -0.64 Total: -3.63 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.46 Total: -30.93 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.04 Total: -25.30 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.21 -7.17 -39.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815224764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.505 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds