Wall clock time and date at job start Tue Mar 31 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46981 * 2 1 4 4 C 1.37851 * 125.89509 * 270.16899 * 3 2 1 5 5 C 1.47106 * 127.02560 * 359.97438 * 4 3 2 6 6 O 1.21555 * 119.99988 * 0.23916 * 5 4 3 7 7 O 1.34787 * 120.00146 * 180.23744 * 5 4 3 8 8 C 1.45191 * 117.00117 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47296 * 180.02562 * 8 7 5 10 10 O 1.42897 * 109.46985 * 64.99968 * 9 8 7 11 11 C 1.42908 * 113.99752 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47029 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99993 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00226 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99692 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00216 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46974 * 89.99925 * 16 14 12 18 18 H 1.48507 * 109.47053 * 209.99764 * 16 14 12 19 19 H 1.48502 * 109.47072 * 329.99666 * 16 14 12 20 20 C 1.46741 * 105.94797 * 180.21554 * 4 3 2 21 21 C 1.34432 * 106.37652 * 359.78058 * 20 4 3 22 22 N 1.34625 * 125.89638 * 90.00607 * 3 2 1 23 23 C 1.46499 * 124.80908 * 0.02891 * 22 3 2 24 24 H 1.09001 * 109.47029 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46943 * 299.99886 * 1 2 3 26 26 H 1.09005 * 109.47493 * 59.99973 * 1 2 3 27 27 H 1.09004 * 109.46599 * 240.00038 * 2 1 3 28 28 H 1.08991 * 109.47522 * 120.00299 * 2 1 3 29 29 H 1.08995 * 109.47511 * 299.99954 * 8 7 5 30 30 H 1.08998 * 109.47341 * 60.00514 * 8 7 5 31 31 H 1.09001 * 109.47249 * 185.00253 * 9 8 7 32 32 H 1.09005 * 109.46875 * 305.00427 * 9 8 7 33 33 H 1.08999 * 109.47008 * 299.99481 * 11 10 9 34 34 H 1.09003 * 109.47297 * 59.99853 * 11 10 9 35 35 H 0.97003 * 119.99692 * 180.02562 * 15 14 12 36 36 H 1.08000 * 126.81457 * 179.76011 * 20 4 3 37 37 H 1.08001 * 125.45778 * 180.02562 * 21 20 4 38 38 H 1.09002 * 109.47391 * 269.72542 * 23 22 3 39 39 H 1.09001 * 109.46813 * 149.72599 * 23 22 3 40 40 H 1.09004 * 109.47041 * 29.72726 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2986 2.1839 -1.1167 5 6 2.1511 1.7778 -2.5229 6 8 1.7518 0.6623 -2.7947 7 8 2.4588 2.6425 -3.5100 8 6 2.2885 2.1740 -4.8736 9 6 2.6851 3.2851 -5.8479 10 8 4.0810 3.5601 -5.7142 11 6 4.5566 4.5890 -6.5844 12 6 6.0327 4.7941 -6.3600 13 1 6.5552 4.1986 -5.6259 14 6 6.7161 5.7420 -7.0917 15 7 6.0799 6.4668 -7.9859 16 14 8.5455 5.9967 -6.8130 17 1 9.3131 5.1043 -7.7184 18 1 8.8973 7.4112 -7.0971 19 1 8.8806 5.6770 -5.4020 20 6 2.7647 3.4822 -0.6161 21 6 2.7384 3.4027 0.7256 22 7 2.2955 2.1650 1.0906 23 6 2.1348 1.7083 2.4733 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.9215 1.3024 -5.0401 30 1 1.2457 1.9023 -5.0369 31 1 2.4738 2.9659 -6.8685 32 1 2.1142 4.1861 -5.6234 33 1 4.3841 4.2973 -7.6203 34 1 4.0245 5.5170 -6.3748 35 1 6.5608 7.1335 -8.5009 36 1 3.0689 4.3327 -1.2081 37 1 3.0222 4.1922 1.4057 38 1 1.1275 1.9416 2.8183 39 1 2.8626 2.2125 3.1092 40 1 2.2950 0.6312 2.5211 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815247842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:49 Heat of formation + Delta-G solvation = -95.094702 kcal Electronic energy + Delta-G solvation = -21506.388388 eV Core-core repulsion = 18094.190380 eV Total energy + Delta-G solvation = -3412.198009 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -41.48662 -39.59404 -36.87212 -35.75200 -33.80329 -33.02421 -32.69638 -30.03778 -28.45393 -27.19729 -26.68593 -24.07975 -22.79163 -22.28501 -21.67277 -20.46057 -18.91267 -17.59848 -16.67433 -16.35697 -16.26591 -15.74417 -15.49559 -15.08465 -14.60046 -14.39944 -14.21160 -14.18345 -13.41145 -13.37114 -13.09068 -12.82622 -12.65113 -12.45061 -12.26404 -12.08081 -11.82783 -11.59557 -11.33013 -11.10744 -10.84060 -10.78598 -10.65614 -10.17111 -10.12698 -9.95777 -9.06639 -8.80522 -8.73364 -8.29073 -8.14327 -6.07057 -4.08238 1.53280 2.34785 2.51610 3.24876 3.33764 3.38369 3.44562 3.47121 4.37977 4.41324 4.41584 4.69973 4.75444 4.84004 4.88824 5.03093 5.12283 5.22231 5.29473 5.33934 5.39487 5.41674 5.61020 5.64292 5.79249 5.94054 5.98876 6.00139 6.02648 6.12681 6.28390 6.66620 6.84121 6.96137 7.06134 7.12632 7.46604 7.83881 8.18617 8.22329 8.60407 9.05106 9.56342 11.04605 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021891 B = 0.003326 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.731185 B = 8416.856861 C = 9308.212281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C 0.112 3.888 4 C -0.222 4.222 5 C 0.540 3.460 6 O -0.531 6.531 7 O -0.336 6.336 8 C 0.076 3.924 9 C 0.062 3.938 10 O -0.390 6.390 11 C 0.194 3.806 12 C -0.513 4.513 13 H 0.067 0.933 14 C 0.056 3.944 15 N -0.900 5.900 16 Si 0.908 3.092 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.271 1.271 20 C -0.134 4.134 21 C -0.030 4.030 22 N -0.441 5.441 23 C 0.068 3.932 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.005 0.995 34 H 0.007 0.993 35 H 0.264 0.736 36 H 0.156 0.844 37 H 0.169 0.831 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 -10.018 20.535 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 C -0.006 4.006 4 C -0.230 4.230 5 C 0.387 3.613 6 O -0.423 6.423 7 O -0.251 6.251 8 C 0.002 3.998 9 C -0.015 4.015 10 O -0.310 6.310 11 C 0.120 3.880 12 C -0.551 4.551 13 H 0.085 0.915 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.735 3.265 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.158 4.158 21 C -0.155 4.155 22 N -0.117 5.117 23 C -0.074 4.074 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.124 0.876 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.174 0.826 37 H 0.187 0.813 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.742 -10.328 20.767 25.996 hybrid contribution 0.787 0.466 -0.243 0.946 sum -10.955 -9.862 20.524 25.269 Atomic orbital electron populations 1.21648 0.93990 1.02047 1.02076 1.20346 0.96675 0.89095 1.04215 1.20509 1.00724 0.94281 0.85038 1.19423 1.17796 0.96910 0.88893 1.20081 0.73304 0.82313 0.85596 1.90755 1.45185 1.21566 1.84841 1.86666 1.78529 1.43852 1.16062 1.23140 1.00845 0.98151 0.77617 1.22318 0.86792 0.96558 0.95872 1.87928 1.19619 1.59247 1.64181 1.20226 0.94914 0.84712 0.88158 1.21069 0.92742 1.19717 1.21587 0.91492 1.24947 0.99195 0.95431 0.94961 1.69970 1.36415 1.23411 1.24120 0.86332 0.84124 0.77237 0.78782 1.20491 1.21100 1.19585 1.22225 1.03110 0.97273 0.93150 1.21733 1.09168 0.88240 0.96373 1.43486 1.50481 1.11752 1.05987 1.22106 1.03350 1.01934 0.79980 0.91884 0.93345 0.91819 0.87625 0.91314 0.90680 0.90635 0.92107 0.93274 0.97673 0.97513 0.92692 0.82630 0.81346 0.90623 0.89431 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.07 -0.66 5.58 -27.88 -0.16 -0.82 16 3 C 0.11 1.37 6.18 -81.51 -0.50 0.87 16 4 C -0.22 -3.40 6.33 -103.01 -0.65 -4.05 16 5 C 0.54 9.50 7.95 34.33 0.27 9.77 16 6 O -0.53 -9.58 14.67 -19.31 -0.28 -9.86 16 7 O -0.34 -6.38 10.09 -43.51 -0.44 -6.82 16 8 C 0.08 1.33 5.85 37.16 0.22 1.55 16 9 C 0.06 1.21 6.33 37.16 0.24 1.45 16 10 O -0.39 -9.89 10.30 -38.80 -0.40 -10.29 16 11 C 0.19 5.47 5.69 36.01 0.20 5.67 16 12 C -0.51 -15.50 9.43 -34.44 -0.32 -15.83 16 13 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 16 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.13 -1.86 11.00 -37.49 -0.41 -2.27 16 21 C -0.03 -0.32 11.32 -16.85 -0.19 -0.51 16 22 N -0.44 -4.32 3.08 -119.60 -0.37 -4.69 16 23 C 0.07 0.34 10.82 59.85 0.65 0.99 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.11 1.29 6.53 -51.93 -0.34 0.95 16 28 H 0.07 0.51 6.92 -51.93 -0.36 0.15 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.30 8.13 -51.93 -0.42 -0.12 16 40 H 0.08 0.34 6.87 -51.93 -0.36 -0.02 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -35.48 346.23 -7.04 -42.52 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -6.10 Total: -4.19 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.39 Total: -2.53 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.37 Total: -31.25 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.12 Total: -26.97 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.48 -7.04 -42.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815247842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.575 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds