Wall clock time and date at job start Tue Mar 31 2020 05:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47347 * 2 1 4 4 C 1.50698 * 109.47161 * 180.02562 * 3 2 1 5 5 N 1.34623 * 125.89916 * 264.97710 * 4 3 2 6 6 H 0.97006 * 124.80971 * 0.02562 * 5 4 3 7 7 C 1.36432 * 110.38395 * 180.02562 * 5 4 3 8 8 C 1.34435 * 109.08340 * 0.26671 * 7 5 4 9 9 C 1.37842 * 125.89720 * 85.00632 * 4 3 2 10 10 C 1.47116 * 127.02079 * 359.97438 * 9 4 3 11 11 O 1.21545 * 120.00054 * 359.97438 * 10 9 4 12 12 O 1.34784 * 119.99885 * 180.02562 * 10 9 4 13 13 C 1.45198 * 117.00048 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47046 * 179.97438 * 13 12 10 15 15 O 1.42900 * 109.47458 * 64.99583 * 14 13 12 16 16 C 1.42903 * 114.00057 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.46903 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00552 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99620 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00103 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99525 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47418 * 90.00260 * 21 19 17 23 23 H 1.48501 * 109.46504 * 209.99996 * 21 19 17 24 24 H 1.48498 * 109.47401 * 329.99618 * 21 19 17 25 25 H 1.09000 * 109.47546 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46624 * 299.99531 * 1 2 3 27 27 H 1.08996 * 109.47519 * 59.99292 * 1 2 3 28 28 H 1.09005 * 109.46624 * 240.00469 * 2 1 3 29 29 H 1.08996 * 109.47519 * 120.00708 * 2 1 3 30 30 H 1.09005 * 109.46875 * 60.00623 * 3 2 1 31 31 H 1.09000 * 109.47398 * 300.00278 * 3 2 1 32 32 H 1.08002 * 125.45555 * 179.97438 * 7 5 4 33 33 H 1.07995 * 126.81341 * 179.73256 * 8 7 5 34 34 H 1.08999 * 109.47065 * 299.99382 * 13 12 10 35 35 H 1.08994 * 109.47477 * 59.99604 * 13 12 10 36 36 H 1.09001 * 109.47088 * 184.99690 * 14 13 12 37 37 H 1.08997 * 109.46923 * 304.99283 * 14 13 12 38 38 H 1.08996 * 109.47080 * 300.00036 * 16 15 14 39 39 H 1.09003 * 109.47042 * 60.00399 * 16 15 14 40 40 H 0.96999 * 119.99718 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3368 1.5377 1.0854 6 1 4.0167 1.6174 1.9976 7 6 5.6513 1.5063 0.7212 8 6 5.7344 1.3953 -0.6160 9 6 4.3547 1.3453 -1.1134 10 6 3.9220 1.2226 -2.5141 11 8 2.7372 1.1981 -2.7842 12 8 4.8394 1.1364 -3.4977 13 6 4.3403 1.0180 -4.8561 14 6 5.5197 0.9333 -5.8272 15 8 6.2497 -0.2712 -5.5862 16 6 7.3778 -0.4489 -6.4453 17 6 8.0698 -1.7434 -6.1043 18 1 7.6864 -2.3682 -5.3113 19 6 9.1927 -2.1302 -6.8049 20 7 9.6594 -1.3696 -7.7710 21 14 10.0501 -3.7352 -6.3827 22 1 9.4692 -4.8351 -7.1938 23 1 11.5002 -3.6144 -6.6789 24 1 9.8627 -4.0319 -4.9398 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9562 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 6.4906 1.5662 1.3983 33 1 6.6373 1.3495 -1.2066 34 1 3.7327 0.1172 -4.9427 35 1 3.7332 1.8904 -5.0975 36 1 5.1475 0.9339 -6.8517 37 1 6.1751 1.7914 -5.6783 38 1 7.0438 -0.4772 -7.4824 39 1 8.0720 0.3804 -6.3096 40 1 10.4495 -1.6415 -8.2636 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817270969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:30 Heat of formation + Delta-G solvation = -108.874770 kcal Electronic energy + Delta-G solvation = -21422.655018 eV Core-core repulsion = 18009.859460 eV Total energy + Delta-G solvation = -3412.795557 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36605 -39.57139 -36.88168 -35.82271 -35.01857 -32.72029 -31.38191 -30.13873 -29.80528 -26.92281 -26.28992 -23.71120 -22.33017 -21.86860 -21.58752 -20.78995 -19.49930 -17.93180 -16.75197 -16.40331 -16.25768 -15.58453 -15.23146 -15.15792 -14.65096 -14.43253 -14.21649 -14.15208 -13.49556 -13.29940 -13.06924 -12.88399 -12.64509 -12.39734 -11.99859 -11.84230 -11.48899 -11.41642 -11.32774 -10.87670 -10.82209 -10.79105 -10.65980 -10.20044 -10.14327 -9.97219 -9.07402 -8.96599 -8.81280 -8.32875 -8.15110 -6.07678 -4.08866 1.51187 2.33982 2.79593 3.31043 3.33310 3.37979 3.43648 3.44142 4.37368 4.48232 4.72323 4.82780 4.87232 4.90558 5.12734 5.21207 5.26670 5.28887 5.38953 5.42080 5.55265 5.59908 5.63876 5.78842 5.86171 5.95495 5.98379 6.05350 6.10887 6.14695 6.26452 6.63437 6.77315 6.88480 7.11883 7.24791 7.45883 7.83239 8.17788 8.20274 8.59616 9.04455 9.55708 11.03988 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.003297 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.740192 B = 8491.334998 C = 8900.847530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.059 4.059 4 C 0.112 3.888 5 N -0.548 5.548 6 H 0.416 0.584 7 C -0.029 4.029 8 C -0.136 4.136 9 C -0.220 4.220 10 C 0.538 3.462 11 O -0.529 6.529 12 O -0.336 6.336 13 C 0.076 3.924 14 C 0.062 3.938 15 O -0.390 6.390 16 C 0.194 3.806 17 C -0.513 4.513 18 H 0.067 0.933 19 C 0.056 3.944 20 N -0.900 5.900 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.271 1.271 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.172 0.828 33 H 0.155 0.845 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.005 0.995 39 H 0.007 0.993 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.136 8.223 18.466 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.097 4.097 4 C -0.006 4.006 5 N -0.143 5.143 6 H 0.253 0.747 7 C -0.155 4.155 8 C -0.160 4.160 9 C -0.228 4.228 10 C 0.385 3.615 11 O -0.421 6.421 12 O -0.251 6.251 13 C 0.003 3.997 14 C -0.016 4.016 15 O -0.310 6.310 16 C 0.120 3.880 17 C -0.551 4.551 18 H 0.085 0.915 19 C -0.145 4.145 20 N -0.539 5.539 21 Si 0.735 3.265 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.196 1.196 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.189 0.811 33 H 0.173 0.827 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.344 8.097 18.477 24.753 hybrid contribution 0.590 -0.555 0.164 0.826 sum -13.754 7.542 18.641 24.362 Atomic orbital electron populations 1.21741 0.95311 1.01832 1.01808 1.21432 0.95996 0.95300 1.02571 1.20416 0.86428 0.98810 1.04028 1.20536 0.93217 1.01256 0.85627 1.41535 1.06378 1.57795 1.08589 0.74725 1.21764 0.85416 1.11645 0.96659 1.22252 0.96308 1.04040 0.93379 1.19455 0.93847 1.20253 0.89269 1.20089 0.83618 0.72236 0.85528 1.90765 1.18141 1.48586 1.84608 1.86667 1.38875 1.82955 1.16630 1.23143 0.96669 1.02094 0.77831 1.22318 0.92948 0.90664 0.95623 1.87927 1.44085 1.37723 1.61244 1.20225 0.82162 0.97026 0.88593 1.21068 1.10517 1.04981 1.18577 0.91492 1.24948 0.96807 0.97856 0.94912 1.69964 1.23941 1.37816 1.22176 0.86333 0.78345 0.82838 0.78967 1.20486 1.21100 1.19585 0.92574 0.93052 0.92182 0.90836 0.92533 0.91300 0.87875 0.81112 0.82687 0.90670 0.90629 0.92104 0.93270 0.97674 0.97515 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 3 C -0.06 -0.56 5.09 -27.89 -0.14 -0.71 16 4 C 0.11 1.27 6.47 -81.51 -0.53 0.74 16 5 N -0.55 -4.61 5.89 -8.88 -0.05 -4.66 16 6 H 0.42 1.94 8.96 -40.82 -0.37 1.57 16 7 C -0.03 -0.27 11.87 -16.85 -0.20 -0.47 16 8 C -0.14 -1.80 11.00 -37.49 -0.41 -2.21 16 9 C -0.22 -3.23 6.33 -103.01 -0.65 -3.88 16 10 C 0.54 9.23 7.95 34.33 0.27 9.50 16 11 O -0.53 -9.28 14.66 -19.30 -0.28 -9.56 16 12 O -0.34 -6.27 10.09 -43.50 -0.44 -6.71 16 13 C 0.08 1.32 5.86 37.16 0.22 1.53 16 14 C 0.06 1.20 6.33 37.16 0.24 1.43 16 15 O -0.39 -9.83 10.30 -38.80 -0.40 -10.23 16 16 C 0.19 5.44 5.69 36.00 0.20 5.65 16 17 C -0.51 -15.45 9.43 -34.44 -0.32 -15.78 16 18 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 21 Si 0.91 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.92 8.01 -51.93 -0.42 0.50 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.10 1.17 6.79 -51.93 -0.35 0.82 16 32 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -34.96 347.95 -7.61 -42.56 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.18 Total: -2.52 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.22 Total: -4.76 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.68 Total: -31.14 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.12 Total: -26.50 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.96 -7.61 -42.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817270969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.313 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds