Wall clock time and date at job start Tue Mar 31 2020 05:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.29444 * 117.96351 * 2 1 4 4 C 1.50702 * 117.96162 * 0.44660 * 3 2 1 5 5 C 1.50069 * 124.07364 * 180.47223 * 3 2 1 6 6 C 1.53022 * 110.14824 * 342.86823 * 5 3 2 7 7 H 1.08997 * 109.63781 * 289.53871 * 6 5 3 8 8 C 1.50695 * 109.63991 * 169.12276 * 6 5 3 9 9 O 1.20829 * 120.00273 * 239.72327 * 8 6 5 10 10 O 1.34231 * 120.00430 * 59.99777 * 8 6 5 11 11 C 1.45201 * 117.00468 * 179.72060 * 10 8 6 12 12 C 1.50694 * 109.47114 * 180.02562 * 11 10 8 13 13 O 1.21291 * 120.00525 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00044 * 180.02562 * 12 11 10 15 15 C 1.37096 * 120.00237 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99979 * 0.02562 * 15 14 12 17 17 C 1.38952 * 120.00131 * 179.97438 * 15 14 12 18 18 N 1.31405 * 120.00273 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99928 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47245 * 90.00107 * 19 17 15 21 21 H 1.48504 * 109.47155 * 210.00041 * 19 17 15 22 22 H 1.48497 * 109.47236 * 329.99778 * 19 17 15 23 23 C 1.53384 * 108.43661 * 49.43747 * 6 5 3 24 24 C 1.50066 * 117.96098 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47051 * 5.24407 * 1 2 3 26 26 H 1.08999 * 109.47138 * 125.24506 * 1 2 3 27 27 H 1.09000 * 109.46841 * 245.25174 * 1 2 3 28 28 H 1.09001 * 109.46782 * 175.15691 * 4 3 2 29 29 H 1.09002 * 109.47165 * 295.16106 * 4 3 2 30 30 H 1.09001 * 109.46607 * 55.16317 * 4 3 2 31 31 H 1.09004 * 109.35560 * 222.65797 * 5 3 2 32 32 H 1.08995 * 109.24328 * 103.00825 * 5 3 2 33 33 H 1.09001 * 109.47165 * 300.00730 * 11 10 8 34 34 H 1.09001 * 109.46667 * 60.00374 * 11 10 8 35 35 H 0.97002 * 119.99660 * 0.02562 * 14 12 11 36 36 H 0.97002 * 120.00381 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.64504 * 52.25279 * 23 6 5 38 38 H 1.09008 * 109.63996 * 172.88176 * 23 6 5 39 39 H 1.09001 * 109.35597 * 283.07256 * 24 2 1 40 40 H 1.09000 * 109.35995 * 42.65988 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 1.2697 2.3916 0.0104 5 6 3.6061 1.3031 -0.0102 6 6 4.2794 -0.0075 0.4030 7 1 4.1088 -0.1882 1.4642 8 6 5.7599 0.0773 0.1352 9 8 6.2836 -0.7086 -0.6185 10 8 6.4981 1.0224 0.7383 11 6 7.9187 1.0407 0.4382 12 6 8.5787 2.1603 1.2009 13 8 7.9172 2.8725 1.9265 14 7 9.9042 2.3704 1.0770 15 6 10.5047 3.3892 1.7704 16 1 9.9156 4.0233 2.4164 17 6 11.8714 3.6054 1.6430 18 7 12.4470 4.5817 2.3080 19 14 12.8904 2.5082 0.5262 20 1 12.9230 3.0872 -0.8409 21 1 14.2744 2.4116 1.0559 22 1 12.2841 1.1536 0.4758 23 6 3.6704 -1.1473 -0.4233 24 6 2.2106 -1.3255 0.0006 25 1 -0.3633 1.0234 -0.0939 26 1 -0.3633 -0.5930 -0.8393 27 1 -0.3633 -0.4302 0.9333 28 1 1.9150 3.2659 0.0959 29 1 0.6978 2.4511 -0.9157 30 1 0.5857 2.3604 0.8585 31 1 3.8899 2.0908 0.6876 32 1 3.9314 1.5755 -1.0142 33 1 8.3641 0.0900 0.7310 34 1 8.0621 1.1952 -0.6312 35 1 10.4332 1.8011 0.4965 36 1 13.4011 4.7324 2.2194 37 1 3.7167 -0.8968 -1.4831 38 1 4.2210 -2.0695 -0.2371 39 1 2.1746 -1.7532 1.0025 40 1 1.7121 -1.9995 -0.6960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829805065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:31 Heat of formation + Delta-G solvation = -121.798172 kcal Electronic energy + Delta-G solvation = -21656.550890 eV Core-core repulsion = 18243.194932 eV Total energy + Delta-G solvation = -3413.355958 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.73407 -39.10031 -38.22723 -36.21110 -34.05548 -33.89601 -32.04910 -31.78873 -28.89954 -27.58384 -26.73054 -24.55613 -23.37496 -22.58840 -20.21192 -19.62936 -18.57744 -17.73891 -17.26395 -16.44335 -16.14991 -15.58193 -15.14836 -14.98170 -14.88963 -14.43402 -14.05692 -13.98607 -13.61092 -13.26656 -12.87596 -12.73172 -12.48748 -12.39659 -12.24402 -12.21492 -12.03326 -11.99023 -11.81394 -11.26108 -11.18190 -10.97953 -10.64807 -10.57856 -10.48997 -10.20103 -10.04236 -9.67090 -8.70987 -8.65533 -8.28820 -6.38844 -3.91666 1.97216 2.25539 2.65039 2.99160 3.03733 3.12338 3.56497 4.04104 4.24965 4.36792 4.50800 4.69617 4.79751 4.98957 4.99947 5.11719 5.14077 5.18194 5.22510 5.29462 5.38946 5.41330 5.47997 5.56071 5.59096 5.63289 5.68257 5.70788 5.78159 5.81663 5.86932 5.93100 6.04406 6.43984 6.55477 6.86181 7.45419 7.82993 8.01673 8.48538 8.84263 9.30507 9.66502 10.73483 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035625 B = 0.003146 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.768639 B = 8897.684407 C = 9480.417990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.137 4.137 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.074 4.074 6 C -0.077 4.077 7 H 0.112 0.888 8 C 0.463 3.537 9 O -0.514 6.514 10 O -0.323 6.323 11 C 0.057 3.943 12 C 0.448 3.552 13 O -0.557 6.557 14 N -0.580 5.580 15 C -0.308 4.308 16 H 0.122 0.878 17 C 0.045 3.955 18 N -0.875 5.875 19 Si 0.879 3.121 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.268 1.268 23 C -0.102 4.102 24 C -0.079 4.079 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.373 0.627 36 H 0.275 0.725 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.043 -11.380 -7.081 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.137 4.137 3 C -0.120 4.120 4 C -0.177 4.177 5 C -0.111 4.111 6 C -0.096 4.096 7 H 0.130 0.870 8 C 0.306 3.694 9 O -0.403 6.403 10 O -0.237 6.237 11 C -0.021 4.021 12 C 0.233 3.767 13 O -0.438 6.438 14 N -0.220 5.220 15 C -0.436 4.436 16 H 0.140 0.860 17 C -0.159 4.159 18 N -0.515 5.515 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.194 1.194 23 C -0.140 4.140 24 C -0.116 4.116 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.206 0.794 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.109 -10.967 -6.741 23.876 hybrid contribution 1.238 -0.883 -0.912 1.773 sum -18.872 -11.849 -7.653 23.561 Atomic orbital electron populations 1.21071 0.92623 1.02939 1.01762 1.20667 0.95709 0.94348 1.02985 1.20624 0.94702 0.94855 1.01828 1.20956 0.99247 0.95747 1.01725 1.20380 0.91642 0.96087 1.02979 1.21109 0.86609 0.98393 1.03490 0.87016 1.23766 0.90537 0.77875 0.77248 1.90640 1.73769 1.40850 1.35019 1.86572 1.21137 1.51492 1.64489 1.22745 0.78201 1.00325 1.00849 1.19203 0.83007 0.87430 0.87059 1.90602 1.62919 1.49078 1.41231 1.42042 1.06454 1.30904 1.42633 1.19424 0.92442 1.07817 1.23929 0.86015 1.25035 0.96429 0.96901 0.97534 1.69610 1.11807 1.29482 1.40566 0.86679 0.80953 0.80529 0.81345 1.19411 1.19955 1.19357 1.21524 0.94955 0.97570 0.99950 1.20356 0.94215 0.94968 1.02016 0.91186 0.92028 0.91866 0.91829 0.91646 0.91489 0.88933 0.90316 0.89498 0.89491 0.79403 0.91395 0.90837 0.90396 0.90728 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 9.62 36.01 0.35 -0.53 16 2 C -0.14 -1.19 5.84 -100.94 -0.59 -1.78 16 3 C -0.12 -1.15 5.84 -100.94 -0.59 -1.74 16 4 C -0.12 -0.98 8.35 36.01 0.30 -0.68 16 5 C -0.07 -0.82 4.94 -28.18 -0.14 -0.96 16 6 C -0.08 -0.89 2.68 -91.56 -0.25 -1.14 16 7 H 0.11 1.19 8.13 -51.93 -0.42 0.77 16 8 C 0.46 7.05 7.24 36.00 0.26 7.31 16 9 O -0.51 -8.62 15.64 -18.75 -0.29 -8.92 16 10 O -0.32 -5.80 9.69 -45.90 -0.44 -6.24 16 11 C 0.06 1.03 5.94 36.00 0.21 1.24 16 12 C 0.45 10.44 7.86 -10.99 -0.09 10.35 16 13 O -0.56 -15.32 16.08 -14.11 -0.23 -15.55 16 14 N -0.58 -13.85 5.09 -10.97 -0.06 -13.90 16 15 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 16 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 17 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 18 N -0.88 -25.21 13.96 55.50 0.77 -24.44 16 19 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 23 C -0.10 -1.02 4.70 -26.51 -0.12 -1.15 16 24 C -0.08 -0.64 5.82 -28.17 -0.16 -0.80 16 25 H 0.07 0.45 5.22 -51.93 -0.27 0.18 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.53 7.93 -51.93 -0.41 0.12 16 29 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.07 0.49 7.36 -51.93 -0.38 0.11 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 34 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 35 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 36 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 38 H 0.08 0.79 7.89 -51.92 -0.41 0.38 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 332.26 15.07 5.01 5.01 Total: -1.00 -32.89 332.26 -6.90 -39.80 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.89 Total: 7.40 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.06 Total: 2.45 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.72 Total: -38.34 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.96 Total: -30.70 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.89 -6.90 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829805065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.002 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds