Wall clock time and date at job start Tue Mar 31 2020 05:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29447 * 117.96127 * 2 1 4 4 C 1.50695 * 117.96104 * 359.48285 * 3 2 1 5 5 C 1.50168 * 124.14461 * 179.73941 * 3 2 1 6 6 C 1.53019 * 110.09466 * 16.71551 * 5 3 2 7 7 H 1.09000 * 109.64685 * 70.67930 * 6 5 3 8 8 C 1.50700 * 109.63990 * 191.09487 * 6 5 3 9 9 O 1.20829 * 119.99981 * 119.57402 * 8 6 5 10 10 O 1.34232 * 120.00199 * 299.57991 * 8 6 5 11 11 C 1.45197 * 117.00075 * 179.97438 * 10 8 6 12 12 C 1.50692 * 109.47151 * 179.97438 * 11 10 8 13 13 O 1.21291 * 120.00227 * 0.02562 * 12 11 10 14 14 N 1.34782 * 120.00334 * 180.02562 * 12 11 10 15 15 C 1.37101 * 120.00315 * 179.97438 * 14 12 11 16 16 H 1.07994 * 119.99703 * 0.28137 * 15 14 12 17 17 C 1.38950 * 119.99758 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00104 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47013 * 59.99808 * 19 17 15 21 21 H 1.48501 * 109.47260 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47011 * 299.99820 * 19 17 15 23 23 C 1.53399 * 108.61472 * 310.88450 * 6 5 3 24 24 C 1.50064 * 117.96390 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.46855 * 175.21284 * 1 2 3 26 26 H 1.09004 * 109.46929 * 295.21561 * 1 2 3 27 27 H 1.09000 * 109.46942 * 55.21064 * 1 2 3 28 28 H 1.08995 * 109.47699 * 5.27112 * 4 3 2 29 29 H 1.09004 * 109.47035 * 125.26754 * 4 3 2 30 30 H 1.08999 * 109.47322 * 245.26289 * 4 3 2 31 31 H 1.08999 * 109.20662 * 256.63210 * 5 3 2 32 32 H 1.09003 * 109.55533 * 137.01558 * 5 3 2 33 33 H 1.09002 * 109.47323 * 60.00030 * 11 10 8 34 34 H 1.09000 * 109.47232 * 300.00237 * 11 10 8 35 35 H 0.97005 * 119.99526 * 0.02562 * 14 12 11 36 36 H 0.97007 * 119.99861 * 180.02562 * 18 17 15 37 37 H 1.08993 * 109.63929 * 187.01850 * 23 6 5 38 38 H 1.08995 * 109.63949 * 307.65005 * 23 6 5 39 39 H 1.09002 * 109.35705 * 76.94374 * 24 2 1 40 40 H 1.09001 * 109.35624 * 317.36247 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1434 0.0000 4 6 1.2697 2.3915 -0.0120 5 6 3.6069 1.3051 0.0057 6 6 4.2795 -0.0075 -0.4022 7 1 4.1093 -0.1923 -1.4628 8 6 5.7600 0.0774 -0.1340 9 8 6.2805 -0.6980 0.6328 10 8 6.5005 1.0143 -0.7468 11 6 7.9196 1.0375 -0.4405 12 6 8.5828 2.1465 -1.2157 13 8 7.9243 2.8487 -1.9535 14 7 9.9079 2.3582 -1.0893 15 6 10.5114 3.3669 -1.7950 16 1 9.9242 3.9947 -2.4488 17 6 11.8775 3.5847 -1.6651 18 7 12.5910 2.8243 -0.8654 19 14 12.6997 4.9596 -2.6261 20 1 12.0913 6.2603 -2.2478 21 1 14.1512 4.9829 -2.3133 22 1 12.5099 4.7287 -4.0807 23 6 3.6702 -1.1472 0.4242 24 6 2.2107 -1.3254 0.0006 25 1 -0.3633 -1.0241 -0.0858 26 1 -0.3633 0.4378 0.9298 27 1 -0.3633 0.5863 -0.8440 28 1 0.2178 2.1196 0.0752 29 1 1.5509 3.0285 0.8266 30 1 1.4297 2.9295 -0.9464 31 1 3.9338 1.5825 1.0078 32 1 3.8915 2.0899 -0.6952 33 1 8.3669 0.0829 -0.7179 34 1 8.0581 1.2068 0.6273 35 1 10.4347 1.7964 -0.4996 36 1 13.5447 2.9766 -0.7744 37 1 4.2209 -2.0693 0.2384 38 1 3.7161 -0.8965 1.4839 39 1 2.1749 -1.7539 -1.0010 40 1 1.7119 -1.9990 0.6975 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829805068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:35 Heat of formation + Delta-G solvation = -129.219042 kcal Electronic energy + Delta-G solvation = -21602.170780 eV Core-core repulsion = 18188.493029 eV Total energy + Delta-G solvation = -3413.677751 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.64771 -39.02337 -38.04394 -36.10345 -33.99284 -33.85506 -32.00540 -31.36860 -28.72822 -27.51045 -26.66477 -24.65612 -23.35422 -22.57654 -20.14396 -19.55901 -18.05982 -17.66649 -17.18468 -16.40207 -16.05217 -15.56961 -15.10134 -14.90791 -14.61988 -14.31732 -14.03737 -13.95951 -13.79909 -13.32881 -12.82081 -12.69627 -12.39715 -12.29420 -12.14800 -11.94535 -11.92090 -11.80103 -11.61421 -11.12881 -11.10793 -10.92517 -10.53731 -10.48683 -10.37266 -10.30011 -10.11755 -9.58907 -8.67891 -8.50821 -8.07624 -6.49284 -3.91369 2.00380 2.33973 2.75356 3.15868 3.23009 3.27873 3.74952 4.11234 4.34516 4.42997 4.65085 4.79565 4.84332 5.03350 5.09098 5.15747 5.18405 5.21012 5.26027 5.33459 5.42433 5.52684 5.55061 5.64465 5.68489 5.71354 5.72042 5.74718 5.85648 5.91491 5.96861 6.07528 6.09060 6.46610 6.67598 6.89090 7.48122 7.87410 7.98347 8.49557 9.07679 9.40203 9.90340 10.67943 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035622 B = 0.003001 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.838593 B = 9329.349568 C = 9937.078734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.136 4.136 3 C -0.121 4.121 4 C -0.130 4.130 5 C -0.073 4.073 6 C -0.077 4.077 7 H 0.111 0.889 8 C 0.462 3.538 9 O -0.514 6.514 10 O -0.324 6.324 11 C 0.059 3.941 12 C 0.439 3.561 13 O -0.576 6.576 14 N -0.553 5.553 15 C -0.303 4.303 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.898 5.898 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.103 4.103 24 C -0.078 4.078 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.395 0.605 36 H 0.274 0.726 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.020 -7.052 3.589 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.136 4.136 3 C -0.121 4.121 4 C -0.186 4.186 5 C -0.110 4.110 6 C -0.096 4.096 7 H 0.129 0.871 8 C 0.304 3.696 9 O -0.403 6.403 10 O -0.238 6.238 11 C -0.018 4.018 12 C 0.223 3.777 13 O -0.460 6.460 14 N -0.191 5.191 15 C -0.432 4.432 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.538 5.538 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.140 4.140 24 C -0.115 4.115 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.228 0.772 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.066 -6.776 3.360 21.444 hybrid contribution 1.077 0.215 0.047 1.100 sum -18.989 -6.561 3.406 20.377 Atomic orbital electron populations 1.20925 0.92693 1.01952 1.01775 1.20687 0.95597 0.94324 1.03027 1.20614 0.94719 0.94941 1.01835 1.21094 0.99341 0.95840 1.02367 1.20327 0.91619 0.96081 1.03015 1.21092 0.86761 0.98298 1.03428 0.87143 1.23738 0.90478 0.77855 0.77485 1.90641 1.73917 1.41116 1.34578 1.86561 1.21452 1.51971 1.63837 1.22741 0.77808 1.00513 1.00771 1.19330 0.83495 0.87507 0.87321 1.90558 1.63511 1.50076 1.41847 1.41707 1.05509 1.31016 1.40819 1.19677 0.91398 1.09345 1.22773 0.87676 1.25310 0.96306 0.98779 0.97355 1.69607 1.08162 1.39087 1.36981 0.85858 0.77683 0.80603 0.79745 1.19756 1.20867 1.19745 1.21520 0.94925 0.97596 0.99994 1.20399 0.94274 0.94883 1.01972 0.92398 0.91731 0.91669 0.91234 0.91732 0.91409 0.90392 0.89013 0.89620 0.89626 0.77166 0.91578 0.90388 0.90831 0.90704 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 8.35 36.01 0.30 -0.52 16 2 C -0.14 -1.22 5.84 -100.94 -0.59 -1.81 16 3 C -0.12 -1.20 5.84 -100.90 -0.59 -1.79 16 4 C -0.13 -1.10 9.62 36.00 0.35 -0.75 16 5 C -0.07 -0.85 5.09 -28.13 -0.14 -0.99 16 6 C -0.08 -0.93 2.68 -91.56 -0.25 -1.18 16 7 H 0.11 1.24 8.13 -51.93 -0.42 0.82 16 8 C 0.46 7.41 7.23 36.01 0.26 7.67 16 9 O -0.51 -9.10 15.65 -18.75 -0.29 -9.40 16 10 O -0.32 -6.12 9.69 -45.91 -0.44 -6.57 16 11 C 0.06 1.15 5.94 36.00 0.21 1.37 16 12 C 0.44 10.70 7.86 -10.99 -0.09 10.61 16 13 O -0.58 -16.11 16.08 -14.11 -0.23 -16.34 16 14 N -0.55 -14.12 5.29 -10.97 -0.06 -14.18 16 15 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 16 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 19 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 C -0.10 -1.08 4.70 -26.52 -0.12 -1.20 16 24 C -0.08 -0.66 5.69 -28.18 -0.16 -0.82 16 25 H 0.06 0.35 7.93 -51.93 -0.41 -0.06 16 26 H 0.06 0.42 7.71 -51.93 -0.40 0.02 16 27 H 0.06 0.43 7.31 -51.93 -0.38 0.05 16 28 H 0.07 0.49 5.21 -51.93 -0.27 0.22 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.53 8.13 -51.93 -0.42 1.10 16 34 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 35 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.08 0.83 7.90 -51.93 -0.41 0.42 16 38 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -31.89 335.41 -7.25 -39.15 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.93 Total: 7.43 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.06 Total: 2.59 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.67 Total: -37.68 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.97 Total: -32.30 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.89 -7.25 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829805068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.073 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds