Wall clock time and date at job start Tue Mar 31 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47416 * 2 1 4 4 O 1.33909 * 125.60503 * 270.24124 * 3 2 1 5 5 C 1.34937 * 109.38036 * 180.16972 * 4 3 2 6 6 C 1.46471 * 125.99994 * 179.88655 * 5 4 3 7 7 O 1.21623 * 120.00284 * 179.68895 * 6 5 4 8 8 O 1.34904 * 119.99769 * 359.68971 * 6 5 4 9 9 C 1.36638 * 108.00483 * 359.62250 * 5 4 3 10 10 C 1.35169 * 125.61022 * 89.99550 * 3 2 1 11 11 C 1.50695 * 126.43796 * 359.96102 * 10 3 2 12 12 N 1.46901 * 109.47230 * 80.00027 * 11 10 3 13 13 C 1.46901 * 111.00346 * 66.04200 * 12 11 10 14 14 C 1.46898 * 111.00072 * 190.00499 * 12 11 10 15 15 H 1.08994 * 109.47868 * 54.99471 * 14 12 11 16 16 C 1.53005 * 109.46640 * 294.99228 * 14 12 11 17 17 C 1.50704 * 109.46995 * 174.99856 * 14 12 11 18 18 H 1.08000 * 120.00263 * 359.97438 * 17 14 12 19 19 C 1.37880 * 119.99684 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00211 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 119.99848 * 180.02562 * 19 17 14 22 22 H 1.48493 * 109.47408 * 89.99996 * 21 19 17 23 23 H 1.48503 * 109.47265 * 210.00465 * 21 19 17 24 24 H 1.48508 * 109.47238 * 330.00126 * 21 19 17 25 25 H 1.09000 * 109.47056 * 60.00223 * 1 2 3 26 26 H 1.08997 * 109.47273 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46888 * 300.00599 * 1 2 3 28 28 H 1.08992 * 109.47290 * 239.99668 * 2 1 3 29 29 H 1.09000 * 109.47056 * 119.99777 * 2 1 3 30 30 H 0.96698 * 117.00116 * 179.97438 * 8 6 5 31 31 H 1.08010 * 126.64705 * 180.18724 * 9 5 4 32 32 H 1.08998 * 109.47157 * 199.99870 * 11 10 3 33 33 H 1.09002 * 109.47089 * 320.00239 * 11 10 3 34 34 H 1.09001 * 109.46520 * 60.00564 * 13 12 11 35 35 H 1.08994 * 109.47161 * 180.02562 * 13 12 11 36 36 H 1.08998 * 109.47107 * 300.00347 * 13 12 11 37 37 H 1.09003 * 109.47200 * 179.97438 * 16 14 12 38 38 H 1.08995 * 109.47603 * 300.00323 * 16 14 12 39 39 H 1.09004 * 109.46884 * 60.00864 * 16 14 12 40 40 H 0.96997 * 119.99633 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2880 2.1573 -1.0887 5 6 2.7250 3.3771 -0.7117 6 6 3.1107 4.4686 -1.6090 7 8 3.4856 5.5303 -1.1490 8 8 3.0502 4.2963 -2.9456 9 6 2.7388 3.4172 0.6540 10 6 2.2947 2.1628 1.0989 11 6 2.1390 1.7253 2.5325 12 7 3.2977 0.9120 2.9249 13 6 4.5263 1.7171 2.9367 14 6 3.0747 0.2723 4.2284 15 1 2.1492 -0.3025 4.1976 16 6 2.9720 1.3468 5.3127 17 6 4.2271 -0.6474 4.5402 18 1 5.0432 -0.7472 3.8399 19 6 4.2394 -1.3616 5.7195 20 7 3.2454 -1.2406 6.5721 21 14 5.6681 -2.5011 6.1064 22 1 6.7168 -1.7486 6.8405 23 1 5.1888 -3.6286 6.9456 24 1 6.2346 -3.0323 4.8405 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.3145 5.0453 -3.4972 31 1 3.0349 4.2525 1.2714 32 1 2.0767 2.6031 3.1756 33 1 1.2288 1.1343 2.6352 34 1 4.4172 2.5359 3.6479 35 1 5.3685 1.0905 3.2300 36 1 4.7048 2.1222 1.9407 37 1 2.8061 0.8723 6.2799 38 1 3.8976 1.9216 5.3436 39 1 2.1385 2.0121 5.0872 40 1 3.2540 -1.7433 7.4016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830355801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:36 Heat of formation + Delta-G solvation = -75.925431 kcal Electronic energy + Delta-G solvation = -22441.796726 eV Core-core repulsion = 19030.429959 eV Total energy + Delta-G solvation = -3411.366767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.73452 -40.02405 -37.39029 -36.32666 -34.34066 -33.34180 -32.29428 -29.70501 -28.47329 -26.86868 -25.20514 -24.96437 -23.77086 -22.21733 -21.19441 -20.00021 -19.22175 -17.96016 -17.43972 -16.61174 -16.12027 -15.63827 -15.34286 -15.03528 -14.59220 -14.16965 -13.84721 -13.57994 -13.53735 -13.09914 -13.00888 -12.53152 -12.28317 -12.05392 -11.82088 -11.62678 -11.41343 -11.18774 -11.08283 -11.06895 -10.91668 -10.80537 -10.67042 -10.43111 -10.04081 -9.90428 -9.69430 -8.91320 -8.41322 -8.39515 -7.19856 -6.03399 -4.07097 0.82723 2.30052 2.38587 2.86342 3.17918 3.29542 3.36564 3.40384 4.40264 4.67523 4.86027 4.99068 5.12177 5.25790 5.28749 5.31438 5.47349 5.50792 5.71739 5.88019 5.95146 6.04473 6.05572 6.13148 6.20228 6.25342 6.26888 6.42049 6.49885 6.66323 6.81737 6.89291 7.01163 7.09737 7.44762 7.66537 7.69686 7.80676 8.07271 8.35196 8.55830 8.98893 9.58194 11.03608 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.004176 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.125720 B = 6703.370993 C = 7137.578334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.062 3.938 4 O -0.154 6.154 5 C -0.093 4.093 6 C 0.575 3.425 7 O -0.502 6.502 8 O -0.507 6.507 9 C -0.083 4.083 10 C -0.172 4.172 11 C 0.119 3.881 12 N -0.530 5.530 13 C 0.035 3.965 14 C 0.211 3.789 15 H 0.040 0.960 16 C -0.173 4.173 17 C -0.500 4.500 18 H 0.063 0.937 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.415 0.585 31 H 0.159 0.841 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.016 0.984 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.030 0.970 39 H 0.007 0.993 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 6.741 -14.330 16.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C 0.008 3.992 4 O -0.050 6.050 5 C -0.142 4.142 6 C 0.420 3.580 7 O -0.392 6.392 8 O -0.319 6.319 9 C -0.103 4.103 10 C -0.173 4.173 11 C -0.009 4.009 12 N -0.253 5.253 13 C -0.113 4.113 14 C 0.105 3.895 15 H 0.058 0.942 16 C -0.233 4.233 17 C -0.538 4.538 18 H 0.081 0.919 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.274 0.726 31 H 0.177 0.823 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.035 0.965 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.049 0.951 39 H 0.026 0.974 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.328 6.154 -14.438 16.280 hybrid contribution 0.955 0.753 0.693 1.400 sum -3.373 6.907 -13.744 15.748 Atomic orbital electron populations 1.21763 0.93809 1.02631 1.02326 1.20341 0.96222 0.86595 1.05685 1.22867 0.98682 0.94491 0.83123 1.84055 1.64627 1.21519 1.34763 1.20280 1.15770 0.85923 0.92260 1.18878 0.73896 0.84704 0.80476 1.90993 1.44798 1.26066 1.77368 1.84686 1.81057 1.47888 1.18237 1.21908 0.97689 0.98754 0.91996 1.20313 1.06609 0.93151 0.97274 1.20413 0.95984 0.96618 0.87917 1.62383 1.00554 1.29253 1.33136 1.22217 0.94507 0.96300 0.98287 1.19332 0.97841 0.91254 0.81095 0.94186 1.22417 0.96919 0.98606 1.05323 1.21106 1.05727 1.23699 1.03282 0.91923 1.24912 0.96124 0.96942 0.96215 1.69881 1.31153 1.42072 1.10242 0.86542 0.82424 0.80406 0.78299 1.20864 1.21314 1.19852 0.92713 0.91270 0.91943 0.89986 0.86393 0.72605 0.82316 0.94302 0.90355 0.96510 0.90731 0.94080 0.89338 0.95079 0.97377 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 37.16 0.37 -1.18 16 2 C -0.05 -0.64 6.25 -27.88 -0.17 -0.81 16 3 C 0.06 0.90 6.57 -35.40 -0.23 0.67 16 4 O -0.15 -2.29 10.67 4.75 0.05 -2.24 16 5 C -0.09 -1.37 7.18 -36.85 -0.26 -1.63 16 6 C 0.58 7.65 8.30 34.05 0.28 7.93 16 7 O -0.50 -7.59 17.65 -19.36 -0.34 -7.93 16 8 O -0.51 -5.11 13.44 -42.49 -0.57 -5.68 16 9 C -0.08 -1.25 9.96 -39.38 -0.39 -1.64 16 10 C -0.17 -2.68 4.70 -104.94 -0.49 -3.17 16 11 C 0.12 2.05 4.40 -4.98 -0.02 2.03 16 12 N -0.53 -10.72 4.73 -237.73 -1.13 -11.84 16 13 C 0.04 0.69 8.60 60.07 0.52 1.21 16 14 C 0.21 5.02 2.34 -68.86 -0.16 4.85 16 15 H 0.04 1.03 8.03 -51.93 -0.42 0.62 16 16 C -0.17 -4.04 8.27 37.16 0.31 -3.74 16 17 C -0.50 -13.13 7.88 -34.44 -0.27 -13.40 16 18 H 0.06 1.66 6.77 -52.49 -0.36 1.31 16 19 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 20 N -0.89 -24.71 11.32 55.43 0.63 -24.09 16 21 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.12 1.65 7.86 -51.93 -0.41 1.25 16 30 H 0.42 1.90 9.11 45.56 0.42 2.31 16 31 H 0.16 2.23 8.06 -52.48 -0.42 1.80 16 32 H 0.04 0.68 6.94 -51.93 -0.36 0.32 16 33 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 34 H 0.02 0.32 6.51 -51.93 -0.34 -0.02 16 35 H 0.07 1.56 6.42 -51.93 -0.33 1.23 16 36 H 0.04 0.74 6.80 -51.93 -0.35 0.38 16 37 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 38 H 0.03 0.71 6.47 -51.93 -0.34 0.37 16 39 H 0.01 0.16 6.75 -51.93 -0.35 -0.20 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -30.03 332.98 -6.81 -36.84 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.81 Total: 1.48 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -0.63 Total: -7.40 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.50 Total: -35.93 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.86 Total: -15.86 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.03 -6.81 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830355801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.088 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds