Wall clock time and date at job start Tue Mar 31 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47416 * 2 1 4 4 O 1.33909 * 125.60503 * 270.24124 * 3 2 1 5 5 C 1.34937 * 109.38036 * 180.16972 * 4 3 2 6 6 C 1.46471 * 125.99994 * 179.88655 * 5 4 3 7 7 O 1.21623 * 120.00284 * 179.68895 * 6 5 4 8 8 O 1.34904 * 119.99769 * 359.68971 * 6 5 4 9 9 C 1.36638 * 108.00483 * 359.62250 * 5 4 3 10 10 C 1.35169 * 125.61022 * 89.99550 * 3 2 1 11 11 C 1.50695 * 126.43796 * 359.96102 * 10 3 2 12 12 N 1.46901 * 109.47230 * 80.00027 * 11 10 3 13 13 C 1.46901 * 111.00346 * 66.04200 * 12 11 10 14 14 C 1.46898 * 111.00072 * 190.00499 * 12 11 10 15 15 H 1.08994 * 109.47868 * 54.99471 * 14 12 11 16 16 C 1.53005 * 109.46640 * 294.99228 * 14 12 11 17 17 C 1.50704 * 109.46995 * 174.99856 * 14 12 11 18 18 H 1.08000 * 120.00263 * 359.97438 * 17 14 12 19 19 C 1.37880 * 119.99684 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00211 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 119.99848 * 180.02562 * 19 17 14 22 22 H 1.48493 * 109.47408 * 89.99996 * 21 19 17 23 23 H 1.48503 * 109.47265 * 210.00465 * 21 19 17 24 24 H 1.48508 * 109.47238 * 330.00126 * 21 19 17 25 25 H 1.09000 * 109.47056 * 60.00223 * 1 2 3 26 26 H 1.08997 * 109.47273 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46888 * 300.00599 * 1 2 3 28 28 H 1.08992 * 109.47290 * 239.99668 * 2 1 3 29 29 H 1.09000 * 109.47056 * 119.99777 * 2 1 3 30 30 H 0.96698 * 117.00116 * 179.97438 * 8 6 5 31 31 H 1.08010 * 126.64705 * 180.18724 * 9 5 4 32 32 H 1.08998 * 109.47157 * 199.99870 * 11 10 3 33 33 H 1.09002 * 109.47089 * 320.00239 * 11 10 3 34 34 H 1.09001 * 109.46520 * 60.00564 * 13 12 11 35 35 H 1.08994 * 109.47161 * 180.02562 * 13 12 11 36 36 H 1.08998 * 109.47107 * 300.00347 * 13 12 11 37 37 H 1.09003 * 109.47200 * 179.97438 * 16 14 12 38 38 H 1.08995 * 109.47603 * 300.00323 * 16 14 12 39 39 H 1.09004 * 109.46884 * 60.00864 * 16 14 12 40 40 H 0.96997 * 119.99633 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2880 2.1573 -1.0887 5 6 2.7250 3.3771 -0.7117 6 6 3.1107 4.4686 -1.6090 7 8 3.4856 5.5303 -1.1490 8 8 3.0502 4.2963 -2.9456 9 6 2.7388 3.4172 0.6540 10 6 2.2947 2.1628 1.0989 11 6 2.1390 1.7253 2.5325 12 7 3.2977 0.9120 2.9249 13 6 4.5263 1.7171 2.9367 14 6 3.0747 0.2723 4.2284 15 1 2.1492 -0.3025 4.1976 16 6 2.9720 1.3468 5.3127 17 6 4.2271 -0.6474 4.5402 18 1 5.0432 -0.7472 3.8399 19 6 4.2394 -1.3616 5.7195 20 7 3.2454 -1.2406 6.5721 21 14 5.6681 -2.5011 6.1064 22 1 6.7168 -1.7486 6.8405 23 1 5.1888 -3.6286 6.9456 24 1 6.2346 -3.0323 4.8405 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.3145 5.0453 -3.4972 31 1 3.0349 4.2525 1.2714 32 1 2.0767 2.6031 3.1756 33 1 1.2288 1.1343 2.6352 34 1 4.4172 2.5359 3.6479 35 1 5.3685 1.0905 3.2300 36 1 4.7048 2.1222 1.9407 37 1 2.8061 0.8723 6.2799 38 1 3.8976 1.9216 5.3436 39 1 2.1385 2.0121 5.0872 40 1 3.2540 -1.7433 7.4016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830355801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:36 Heat of formation + Delta-G solvation = -95.236693 kcal Electronic energy + Delta-G solvation = -22442.634125 eV Core-core repulsion = 19030.429959 eV Total energy + Delta-G solvation = -3412.204166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.88614 -41.01964 -39.03329 -37.26910 -35.63735 -34.67089 -33.90926 -31.03949 -30.08032 -28.34035 -27.15122 -25.98572 -25.36446 -23.28233 -22.35865 -21.44967 -20.61591 -19.03053 -18.57000 -18.07534 -17.74332 -16.95052 -16.68855 -16.35208 -15.94914 -15.65163 -15.30033 -14.95599 -14.66933 -14.42832 -14.21356 -13.96770 -13.67641 -13.32312 -13.21110 -12.89180 -12.79211 -12.74964 -12.61487 -12.53585 -12.44779 -12.17315 -12.11368 -11.98325 -11.80838 -11.68976 -10.98452 -10.82235 -10.45559 -9.56599 -8.84802 -8.07086 -6.16792 -0.26632 1.13416 1.34700 1.44499 1.46553 1.56000 1.76429 2.18992 2.46470 3.22847 3.52253 3.62877 3.66114 4.06111 4.20379 4.26947 4.37818 4.49051 4.54244 4.62908 4.70005 4.73409 4.83748 4.89304 4.90012 4.96093 5.05396 5.15913 5.19071 5.20528 5.25532 5.34466 5.41904 5.58204 5.74805 5.82941 5.90078 6.21737 6.49766 6.75042 6.82754 6.96439 7.52231 8.98804 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.004176 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.125720 B = 6703.370993 C = 7137.578334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 C 0.067 3.933 4 O -0.154 6.154 5 C -0.100 4.100 6 C 0.584 3.416 7 O -0.524 6.524 8 O -0.499 6.499 9 C -0.088 4.088 10 C -0.188 4.188 11 C 0.126 3.874 12 N -0.533 5.533 13 C 0.043 3.957 14 C 0.217 3.783 15 H 0.016 0.984 16 C -0.161 4.161 17 C -0.511 4.511 18 H 0.056 0.944 19 C 0.015 3.985 20 N -0.919 5.919 21 Si 0.953 3.047 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.270 1.270 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.440 0.560 31 H 0.165 0.835 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.017 0.983 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 6.887 -15.881 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C 0.014 3.986 4 O -0.050 6.050 5 C -0.149 4.149 6 C 0.430 3.570 7 O -0.416 6.416 8 O -0.313 6.313 9 C -0.109 4.109 10 C -0.190 4.190 11 C -0.002 4.002 12 N -0.256 5.256 13 C -0.105 4.105 14 C 0.110 3.890 15 H 0.034 0.966 16 C -0.220 4.220 17 C -0.550 4.550 18 H 0.074 0.926 19 C -0.184 4.184 20 N -0.559 5.559 21 Si 0.780 3.220 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.194 1.194 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.303 0.697 31 H 0.183 0.817 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.206 6.317 -16.032 17.738 hybrid contribution 0.889 0.740 1.071 1.576 sum -3.316 7.057 -14.962 16.872 Atomic orbital electron populations 1.21744 0.92188 1.03732 1.02372 1.20409 0.97534 0.85271 1.05582 1.23212 0.97558 0.95054 0.82816 1.84066 1.64584 1.21642 1.34711 1.20544 1.15568 0.86186 0.92607 1.18638 0.73322 0.83802 0.81271 1.90989 1.45892 1.26719 1.78004 1.84631 1.80461 1.49334 1.16891 1.22000 0.97691 0.98697 0.92470 1.20134 1.08377 0.93939 0.96507 1.20323 0.94780 0.96034 0.89044 1.62265 1.01925 1.30472 1.30970 1.22128 0.93531 0.95688 0.99173 1.19082 0.95891 0.91171 0.82896 0.96570 1.22233 0.97521 0.98525 1.03724 1.21364 1.06190 1.24220 1.03212 0.92587 1.25601 0.98268 0.98317 0.96201 1.70000 1.32594 1.42822 1.10514 0.85624 0.79692 0.78636 0.78054 1.20598 1.21077 1.19446 0.91807 0.89686 0.92718 0.88289 0.88220 0.69713 0.81725 0.94397 0.90134 0.96489 0.92494 0.92424 0.92007 0.95275 0.95440 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.89 71.98 0.71 -2.03 16 2 C -0.05 -1.19 6.25 29.85 0.19 -1.00 16 3 C 0.07 1.87 6.57 24.98 0.16 2.04 16 4 O -0.15 -4.31 10.67 -4.85 -0.05 -4.36 16 5 C -0.10 -2.77 7.18 24.04 0.17 -2.60 16 6 C 0.58 14.40 8.30 69.97 0.58 14.98 16 7 O -0.52 -15.03 17.65 19.43 0.34 -14.68 16 8 O -0.50 -8.72 13.44 -56.81 -0.76 -9.49 16 9 C -0.09 -2.54 9.96 22.40 0.22 -2.32 16 10 C -0.19 -5.67 4.70 -20.07 -0.09 -5.77 16 11 C 0.13 4.27 4.40 85.56 0.38 4.65 16 12 N -0.53 -21.47 4.73 -906.05 -4.29 -25.76 16 13 C 0.04 1.67 8.60 127.69 1.10 2.76 16 14 C 0.22 10.41 2.34 44.17 0.10 10.51 16 15 H 0.02 0.86 8.03 -2.39 -0.02 0.84 16 16 C -0.16 -7.53 8.27 71.98 0.60 -6.94 16 17 C -0.51 -27.07 7.88 25.60 0.20 -26.87 16 18 H 0.06 2.99 6.77 -2.91 -0.02 2.97 16 19 C 0.01 0.79 5.30 84.65 0.45 1.24 16 20 N -0.92 -51.35 11.32 21.45 0.24 -51.11 16 21 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.10 2.74 7.86 -2.39 -0.02 2.72 16 30 H 0.44 2.72 9.11 -74.06 -0.67 2.04 16 31 H 0.17 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.04 1.29 6.94 -2.39 -0.02 1.28 16 33 H 0.08 2.67 7.99 -2.39 -0.02 2.65 16 34 H 0.02 0.64 6.51 -2.39 -0.02 0.62 16 35 H 0.06 2.38 6.42 -2.39 -0.02 2.36 16 36 H 0.06 2.01 6.80 -2.39 -0.02 2.00 16 37 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 38 H 0.03 1.33 6.47 -2.39 -0.02 1.31 16 39 H 0.03 1.13 6.75 -2.38 -0.02 1.12 16 40 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -63.10 332.98 2.67 -60.44 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.39 Total: 11.44 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.77 Total: -11.34 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -4.04 Total: -76.86 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.47 Total: -28.53 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -63.10 2.67 -60.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830355801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.800 kcal (2) G-P(sol) polarization free energy of solvation -63.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds