Wall clock time and date at job start Tue Mar 31 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47573 * 2 1 4 4 O 1.33913 * 125.60604 * 275.63637 * 3 2 1 5 5 C 1.34940 * 109.37930 * 179.97438 * 4 3 2 6 6 C 1.46475 * 125.99513 * 180.02562 * 5 4 3 7 7 O 1.21612 * 119.99812 * 179.97438 * 6 5 4 8 8 O 1.34894 * 120.00058 * 359.97438 * 6 5 4 9 9 C 1.36638 * 108.00871 * 0.02562 * 5 4 3 10 10 C 1.35171 * 125.61227 * 95.63075 * 3 2 1 11 11 C 1.50693 * 126.43347 * 0.02562 * 10 3 2 12 12 N 1.46902 * 109.47583 * 285.53061 * 11 10 3 13 13 C 1.46905 * 110.99856 * 291.45645 * 12 11 10 14 14 C 1.52997 * 109.46940 * 300.94041 * 13 12 11 15 15 C 1.46895 * 111.00218 * 167.49992 * 12 11 10 16 16 C 1.50702 * 109.47111 * 195.53751 * 15 12 11 17 17 H 1.07994 * 119.99730 * 4.89573 * 16 15 12 18 18 C 1.37882 * 119.99958 * 184.89064 * 16 15 12 19 19 N 1.31515 * 119.99766 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99854 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47132 * 60.00166 * 20 18 16 22 22 H 1.48499 * 109.47057 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47173 * 300.00039 * 20 18 16 24 24 H 1.09000 * 109.47127 * 300.00664 * 1 2 3 25 25 H 1.09004 * 109.46860 * 60.00184 * 1 2 3 26 26 H 1.08994 * 109.47338 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47637 * 239.99367 * 2 1 3 28 28 H 1.09004 * 109.46860 * 119.99816 * 2 1 3 29 29 H 0.96696 * 117.00655 * 179.97438 * 8 6 5 30 30 H 1.08002 * 126.64980 * 180.26117 * 9 5 4 31 31 H 1.09004 * 109.47481 * 45.53586 * 11 10 3 32 32 H 1.09005 * 109.47261 * 165.52751 * 11 10 3 33 33 H 1.08998 * 109.46768 * 60.93967 * 13 12 11 34 34 H 1.08998 * 109.46725 * 180.93512 * 13 12 11 35 35 H 1.09005 * 109.46879 * 302.95517 * 14 13 12 36 36 H 1.08996 * 109.47446 * 62.95860 * 14 13 12 37 37 H 1.08999 * 109.46987 * 182.95884 * 14 13 12 38 38 H 1.09000 * 109.47167 * 315.54275 * 15 12 11 39 39 H 1.09007 * 109.47379 * 75.53784 * 15 12 11 40 40 H 0.97002 * 119.99564 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.1915 2.1915 -1.0835 5 6 2.6579 3.4008 -0.7082 6 6 2.9601 4.5219 -1.6011 7 8 3.3772 5.5685 -1.1433 8 8 2.7759 4.3935 -2.9312 9 6 2.7987 3.3961 0.6509 10 6 2.3965 2.1269 1.0936 11 6 2.3747 1.6419 2.5202 12 7 0.9874 1.5976 3.0014 13 6 0.4346 2.9517 3.1391 14 6 1.2896 3.7541 4.1219 15 6 0.8927 0.8590 4.2675 16 6 -0.5471 0.5033 4.5350 17 1 -1.3043 0.7263 3.7980 18 6 -0.8976 -0.1070 5.7207 19 7 0.0245 -0.3782 6.6184 20 14 -2.6822 -0.5486 6.0519 21 1 -3.1610 -1.4905 5.0084 22 1 -2.7938 -1.1907 7.3863 23 1 -3.5104 0.6836 6.0242 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.9887 5.1606 -3.4801 30 1 3.1473 4.2127 1.2658 31 1 2.8090 0.6434 2.5712 32 1 2.9542 2.3223 3.1442 33 1 0.4375 3.4458 2.1675 34 1 -0.5876 2.8905 3.5125 35 1 1.3296 3.2327 5.0783 36 1 2.2985 3.8601 3.7233 37 1 0.8496 4.7411 4.2644 38 1 1.4861 -0.0529 4.2015 39 1 1.2704 1.4802 5.0798 40 1 -0.2221 -0.8079 7.4523 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830363371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:33 Heat of formation + Delta-G solvation = -79.473567 kcal Electronic energy + Delta-G solvation = -22565.206657 eV Core-core repulsion = 19153.686032 eV Total energy + Delta-G solvation = -3411.520626 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.72632 -40.02633 -37.44092 -36.32745 -34.07653 -33.16329 -32.41795 -29.88495 -29.19283 -27.27349 -24.92290 -24.82344 -23.13861 -22.19543 -21.22186 -20.24375 -19.23445 -17.91111 -17.40614 -16.59455 -16.16217 -15.62226 -15.33712 -14.99518 -14.83946 -14.22603 -14.00179 -13.74968 -13.34490 -13.06902 -13.04132 -12.75554 -12.09750 -11.98369 -11.81793 -11.71811 -11.58700 -11.27696 -11.08672 -11.01699 -11.00873 -10.73394 -10.69180 -10.52285 -10.11615 -9.78282 -9.69984 -9.27263 -8.44160 -8.37511 -7.22438 -6.03508 -4.04445 0.83336 2.31084 2.39600 2.86538 3.18981 3.32245 3.36883 3.39487 4.41856 4.71414 4.86158 4.96175 5.14729 5.31772 5.35050 5.48645 5.50505 5.59658 5.76114 5.78927 5.91386 5.94878 6.01694 6.11404 6.15487 6.16150 6.22684 6.27221 6.40828 6.53604 6.65267 6.71744 6.88036 7.03296 7.25202 7.42486 7.66680 7.80461 8.07814 8.17985 8.52856 9.03600 9.59794 11.06805 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025079 B = 0.004345 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.212612 B = 6443.337168 C = 6974.701701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.040 4.040 3 C 0.064 3.936 4 O -0.154 6.154 5 C -0.094 4.094 6 C 0.575 3.425 7 O -0.503 6.503 8 O -0.507 6.507 9 C -0.083 4.083 10 C -0.173 4.173 11 C 0.114 3.886 12 N -0.526 5.526 13 C 0.062 3.938 14 C -0.190 4.190 15 C 0.188 3.812 16 C -0.502 4.502 17 H 0.062 0.938 18 C 0.056 3.944 19 N -0.900 5.900 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.278 1.278 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.415 0.585 30 H 0.159 0.841 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.024 0.976 39 H 0.004 0.996 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 5.130 -14.702 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 C 0.011 3.989 4 O -0.050 6.050 5 C -0.143 4.143 6 C 0.420 3.580 7 O -0.393 6.393 8 O -0.319 6.319 9 C -0.103 4.103 10 C -0.175 4.175 11 C -0.014 4.014 12 N -0.250 5.250 13 C -0.067 4.067 14 C -0.248 4.248 15 C 0.063 3.937 16 C -0.541 4.541 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.539 5.539 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.204 1.204 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.274 0.726 30 H 0.176 0.824 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.022 0.978 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.051 4.650 -14.801 16.316 hybrid contribution -0.234 0.871 0.668 1.122 sum 4.817 5.520 -14.133 15.919 Atomic orbital electron populations 1.21774 0.92816 1.02635 1.03473 1.20216 0.97611 0.85957 1.03905 1.22934 0.98110 0.94616 0.83278 1.84060 1.64770 1.20980 1.35140 1.20278 1.15421 0.86085 0.92562 1.18880 0.73866 0.84810 0.80396 1.90987 1.43612 1.27619 1.77074 1.84684 1.80947 1.47333 1.18899 1.21889 0.98218 0.98230 0.92011 1.20284 1.06505 0.93507 0.97198 1.20469 0.92573 1.00144 0.88177 1.62370 1.14789 1.14495 1.33346 1.21931 0.99501 0.88445 0.96777 1.22396 1.00035 1.00359 1.02031 1.19810 0.97676 0.92410 0.83769 1.21084 0.93080 1.38292 1.01636 0.91981 1.24962 0.97354 0.96099 0.96099 1.69942 1.32850 1.42858 1.08284 0.86608 0.85156 0.78666 0.77247 1.20211 1.21476 1.20363 0.89380 0.93409 0.91809 0.90709 0.87807 0.72617 0.82374 0.90372 0.93952 0.93112 0.90193 0.91410 0.93640 0.93385 0.95783 0.97794 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.89 37.16 0.37 -1.65 16 2 C -0.04 -0.51 6.31 -27.89 -0.18 -0.69 16 3 C 0.06 0.94 6.57 -35.40 -0.23 0.70 16 4 O -0.15 -2.29 10.67 4.73 0.05 -2.24 16 5 C -0.09 -1.37 7.18 -36.84 -0.26 -1.63 16 6 C 0.58 7.59 8.30 34.05 0.28 7.87 16 7 O -0.50 -7.53 17.65 -19.35 -0.34 -7.87 16 8 O -0.51 -5.10 13.44 -42.46 -0.57 -5.67 16 9 C -0.08 -1.22 10.34 -39.38 -0.41 -1.63 16 10 C -0.17 -2.65 4.70 -104.94 -0.49 -3.14 16 11 C 0.11 1.91 4.78 -4.98 -0.02 1.89 16 12 N -0.53 -10.25 4.55 -237.51 -1.08 -11.34 16 13 C 0.06 1.15 5.76 -3.82 -0.02 1.13 16 14 C -0.19 -3.28 9.25 37.16 0.34 -2.94 16 15 C 0.19 4.50 4.61 -4.98 -0.02 4.48 16 16 C -0.50 -13.26 8.45 -34.44 -0.29 -13.55 16 17 H 0.06 1.63 7.66 -52.49 -0.40 1.23 16 18 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -25.77 13.29 55.43 0.74 -25.04 16 20 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H 0.09 1.44 8.06 -51.93 -0.42 1.02 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.10 1.36 7.35 -51.93 -0.38 0.98 16 29 H 0.42 1.89 9.11 45.56 0.42 2.30 16 30 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.08 1.28 7.32 -51.93 -0.38 0.90 16 32 H 0.04 0.70 5.92 -51.93 -0.31 0.40 16 33 H 0.05 0.89 7.20 -51.93 -0.37 0.52 16 34 H 0.08 1.64 7.25 -51.93 -0.38 1.26 16 35 H 0.07 1.34 6.18 -51.93 -0.32 1.02 16 36 H 0.04 0.72 6.37 -51.93 -0.33 0.39 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.02 0.61 7.78 -51.93 -0.40 0.21 16 39 H 0.00 0.11 5.93 -51.92 -0.31 -0.20 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 337.15 15.07 5.08 5.08 Total: -1.00 -30.41 337.15 -7.02 -37.43 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.84 Total: 1.36 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.04 Total: -7.73 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.34 Total: -36.37 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.86 Total: -15.77 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.41 -7.02 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830363371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.041 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds